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  1. Cassava (Manihot esculenta Crantz) storage root provides a staple food source for millions of people worldwide. Increasing the carotenoid content in storage root of cassava could provide improved nutritional and ...

    Authors: Luiz JCB Carvalho, Marco AV Agustini, James V Anderson, Eduardo A Vieira, Claudia RB de Souza, Songbi Chen, Barbara A Schaal and Joseane P Silva
    Citation: BMC Plant Biology 2016 16:133
  2. Among secondary metabolites, flavonoids are particularly crucial for plant growth, development, and reproduction, as well as beneficial for maintenance of human health. As a flowering plant, safflower has synt...

    Authors: YanHua Tu, Fei Liu, DanDan Guo, LiJiao Fan, ZhenXian Zhu, YingRu Xue, Yue Gao and MeiLi Guo
    Citation: BMC Plant Biology 2016 16:132
  3. Salinity stress is a major constrain in the global rice production and hence serious efforts are being undertaken towards deciphering its remedial strategies. The comparative analysis of differential response ...

    Authors: Navdeep Kaur, Manish Dhawan, Isha Sharma and Pratap Kumar Pati
    Citation: BMC Plant Biology 2016 16:131
  4. The amount and structure of genetic diversity in dessert apple germplasm conserved at a European level is mostly unknown, since all diversity studies conducted in Europe until now have been performed on region...

    Authors: Jorge Urrestarazu, Caroline Denancé, Elisa Ravon, Arnaud Guyader, Rémi Guisnel, Laurence Feugey, Charles Poncet, Marc Lateur, Patrick Houben, Matthew Ordidge, Felicidad Fernandez-Fernandez, Kate M. Evans, Frantisek Paprstein, Jiri Sedlak, Hilde Nybom, Larisa Garkava-Gustavsson…
    Citation: BMC Plant Biology 2016 16:130
  5. The low-phosphate-tolerant maize mutant Qi319-96 was obtained from Qi319 through cellular engineering. To elucidate the molecular mechanisms underlying the low-phosphate tolerance of this mutant, we performed ...

    Authors: Kewei Zhang, Hanhan Liu, Jiuling Song, Wei Wu, Kunpeng Li and Juren Zhang
    Citation: BMC Plant Biology 2016 16:129
  6. Breeding for cold tolerance in maize promises to allow increasing growth area and production in temperate zones. The objective of this research was to conduct genome-wide association analyses (GWAS) in tempera...

    Authors: Pedro Revilla, Víctor Manuel Rodríguez, Amando Ordás, Renaud Rincent, Alain Charcosset, Catherine Giauffret, Albrecht E. Melchinger, Chris-Carolin Schön, Eva Bauer, Thomas Altmann, Dominique Brunel, Jesús Moreno-González, Laura Campo, Milena Ouzunova, Ángel Álvarez, José Ignacio Ruíz de Galarreta…
    Citation: BMC Plant Biology 2016 16:127
  7. Plant TRANSPARENT TESTA GLABRA (TTG) proteins regulate various developmental activities via the auxin signaling pathway. Recently, we elucidated the developmental role of tobacco (Nicotiana tabacum L.) NtTTG2 in ...

    Authors: Jun Ge, Baoyan Li, Dan Shen, Junyi Xie, Juying Long and Hansong Dong
    Citation: BMC Plant Biology 2016 16:126
  8. The secondary metabolites of the Artemisia genus are well known for their important therapeutic properties. This genus is one of the valuable sources of flavonoids and other polyphenols, but due to the low conten...

    Authors: Erum Dilshad, Hammad Ismail, Ihsan-ul- Haq, Rosa Maria Cusido, Javier Palazon, Karla Ramirez-Estrada and Bushra Mirza
    Citation: BMC Plant Biology 2016 16:125
  9. MicroRNAs (miRNAs) play a critical role in responses to biotic and abiotic stress and have been characterized in a large number of plant species. Although flax (Linum usitatissimum L.) is one of the most importan...

    Authors: Ying Yu, Guangwen Wu, Hongmei Yuan, Lili Cheng, Dongsheng Zhao, Wengong Huang, Shuquan Zhang, Liguo Zhang, Hongyu Chen, Jian Zhang and Fengzhi Guan
    Citation: BMC Plant Biology 2016 16:124
  10. Dwarfism is one of the most valuable traits in banana breeding because semi-dwarf cultivars show good resistance to damage by wind and rain. Moreover, these cultivars present advantages of convenient cultivati...

    Authors: Jingjing Chen, Jianghui Xie, Yajie Duan, Huigang Hu, Yulin Hu and Weiming Li
    Citation: BMC Plant Biology 2016 16:123
  11. MicroRNAs (miRNAs), a class of small non-coding endogenous RNAs that regulate gene expression post-transcriptionally, play multiple key roles in plant growth and development and in biotic and abiotic stress re...

    Authors: Thangasamy Saminathan, Abiodun Bodunrin, Nripendra V. Singh, Ramajayam Devarajan, Padma Nimmakayala, Moersfelder Jeff, Mallikarjuna Aradhya and Umesh K. Reddy
    Citation: BMC Plant Biology 2016 16:122
  12. The phytohormone ethylene (ET) is a key signaling molecule for inducing the biosynthesis of shikonin and its derivatives, which are secondary metabolites in Lithospermum erythrorhizon. Although ETHYLENE INSENSITI...

    Authors: Rongjun Fang, Ailan Zou, Hua Zhao, Fengyao Wu, Yu Zhu, Hu Zhao, Yonghui Liao, Ren-Jie Tang, Yanjun Pang, Rongwu Yang, Xiaoming Wang, Jinliang Qi, Guihua Lu and Yonghua Yang
    Citation: BMC Plant Biology 2016 16:121
  13. Sugar beet (Beta vulgaris) is an important crop of temperate climate zones, which provides nearly 30 % of the world’s annual sugar needs. From the total genome size of 758 Mb, only 567 Mb were incorporated in the...

    Authors: Teresa Kowar, Falk Zakrzewski, Jiří Macas, Andrea Kobližková, Prisca Viehoever, Bernd Weisshaar and Thomas Schmidt
    Citation: BMC Plant Biology 2016 16:120
  14. Agarwood, is a resinous portion derived from Aquilaria sinensis, has been widely used in traditional medicine and incense. 2-(2-phenylethyl)chromones are principal components responsible for the quality of agarwo...

    Authors: Xiaohui Wang, Bowen Gao, Xiao Liu, Xianjuan Dong, Zhongxiu Zhang, Huiyan Fan, Le Zhang, Juan Wang, Shepo Shi and Pengfei Tu
    Citation: BMC Plant Biology 2016 16:119
  15. Grapevine is a major food crop that is affected by global climate change. Consistent with field studies, dehydration assays of grapevine leaves can reveal valuable information of the plant’s response at physio...

    Authors: Daniel W. Hopper, Ryan Ghan, Karen A. Schlauch and Grant R. Cramer
    Citation: BMC Plant Biology 2016 16:118
  16. The phytohormone ethylene plays a central role in development and senescence of climacteric flowers. In ornamental plant production, ethylene sensitive plants are usually protected against negative effects of ...

    Authors: Line Jensen, Josefine Nymark Hegelund, Andreas Olsen, Henrik Lütken and Renate Müller
    Citation: BMC Plant Biology 2016 16:117
  17. Drought stress is one of the major causes of crop loss. WRKY transcription factors, as one of the largest transcription factor families, play important roles in regulation of many plant processes, including dr...

    Authors: Guan-Hua He, Ji-Yuan Xu, Yan-Xia Wang, Jia-Ming Liu, Pan-Song Li, Ming Chen, You-Zhi Ma and Zhao-Shi Xu
    Citation: BMC Plant Biology 2016 16:116
  18. Drought stress is the major environmental stress that affects plant growth and productivity. It triggers a wide range of responses detectable at molecular, biochemical and physiological levels. At the molecula...

    Authors: Alessandra Fracasso, Luisa M. Trindade and Stefano Amaducci
    Citation: BMC Plant Biology 2016 16:115
  19. Plants constantly monitor changes in photoperiod or day length to trigger the flowering cycle at the most appropriate time of the year. It is well established that photoperiodic flowering is intimately associa...

    Authors: Mi-Jeong Park, Young-Ju Kwon, Kyung-Eun Gil and Chung-Mo Park
    Citation: BMC Plant Biology 2016 16:114
  20. With the increasing interest in metabolic engineering of plants using genetic manipulation and gene editing technologies to enhance growth, nutritional value and environmental adaptation, a major concern is th...

    Authors: Andrew F. Page, Leland J. Cseke, Rakesh Minocha, Swathi A. Turlapati, Gopi K. Podila, Alexander Ulanov, Zhong Li and Subhash C. Minocha
    Citation: BMC Plant Biology 2016 16:113
  21. Plant profilin genes encode core cell-wall structural proteins and are evidenced for their up-regulation under cotton domestication. Notwithstanding striking discoveries in the genetics of cell-wall organizati...

    Authors: Dhananjay K. Pandey and Bhupendra Chaudhary
    Citation: BMC Plant Biology 2016 16:112
  22. Growth, development, and pigment synthesis in Brassica rapa subsp. rapa cv. Tsuda, a popular vegetable crop, are influenced by light. Although microRNAs (miRNAs) have vital roles in the metabolic processes and ab...

    Authors: Bo Zhou, Pengzhen Fan, Yuhua Li, Haifang Yan and Qijiang Xu
    Citation: BMC Plant Biology 2016 16:111
  23. Epidermal bladder cells (EBC) are large single-celled, specialized, and modified trichomes found on the aerial parts of the halophyte Mesembryanthemum crystallinum. Recent development of a simple but high through...

    Authors: Bronwyn J. Barkla, Rosario Vera-Estrella and Carolyn Raymond
    Citation: BMC Plant Biology 2016 16:110
  24. High salinity adversely affects crop production. Pyruvic acid is the precursor of abscisic acid (ABA) and other chemicals that are synthesized in chloroplast, some of which are involved in the response to salt...

    Authors: Yang Zhao, Xinghui Ai, Mengcheng Wang, Langtao Xiao and Guangmin Xia
    Citation: BMC Plant Biology 2016 16:109
  25. Clinically important anti-cancer drugs vinblastine and vincristine are solely synthesized by the terpenoid indole alkaloid (TIA) pathway in Catharanthus roseus. Anthranilate synthase (AS) is a rate-limiting enzym...

    Authors: Jiayi Sun, Harish Manmathan, Cheng Sun and Christie A. M. Peebles
    Citation: BMC Plant Biology 2016 16:108
  26. Plant lipid transfer proteins (LTPs) assemble a family of small (7–9 kDa) ubiquitous cationic proteins with an ability to bind and transport lipids as well as participate in various physiological processes inc...

    Authors: Ivan V. Bogdanov, Zakhar O. Shenkarev, Ekaterina I. Finkina, Daria N. Melnikova, Eugene I. Rumynskiy, Alexander S. Arseniev and Tatiana V. Ovchinnikova
    Citation: BMC Plant Biology 2016 16:107
  27. Plant adaptation to limited phosphate availability comprises a wide range of responses to conserve and remobilize internal phosphate sources and to enhance phosphate acquisition. Vigorous restructuring of root...

    Authors: Wolfgang Hoehenwarter, Susann Mönchgesang, Steffen Neumann, Petra Majovsky, Steffen Abel and Jens Müller
    Citation: BMC Plant Biology 2016 16:106
  28. In natural environments, several adverse environmental conditions occur simultaneously constituting a unique stress factor. In this work, physiological parameters and the hormonal regulation of Carrizo citrang...

    Authors: Sara I. Zandalinas, Rosa M. Rivero, Vicente Martínez, Aurelio Gómez-Cadenas and Vicent Arbona
    Citation: BMC Plant Biology 2016 16:105
  29. Berry size is considered as one of the main selection criteria in table grape breeding programs. However, this is a quantitative and polygenic trait, and its genetic determination is still poorly understood. C...

    Authors: Claudia Muñoz-Espinoza, Alex Di Genova, José Correa, Romina Silva, Alejandro Maass, Mauricio González-Agüero, Ariel Orellana and Patricio Hinrichsen
    Citation: BMC Plant Biology 2016 16:104
  30. It is widely accepted that cultivated rice (Oryza sativa L.) was domesticated from common wild rice (Oryza rufipogon Griff.). Compared to other studies which concentrate on rice origin, this study is to genetical...

    Authors: Fantao Zhang, Tao Xu, Linyong Mao, Shuangyong Yan, Xiwen Chen, Zhenfeng Wu, Rui Chen, Xiangdong Luo, Jiankun Xie and Shan Gao
    Citation: BMC Plant Biology 2016 16:103
  31. Xylan is the most abundant un-cellulosic polysaccharides of plant cell walls. Much progress in xylan biosynthesis has been gained in the model plant species Arabidopsis. Two homologous pairs Irregular Xylem 9 (IR...

    Authors: Xiaoyu Wang, Qi Tang, Xun Zhao, Chunlin Jia, Xuanwen Yang, Guo He, Aimin Wu, Yingzhen Kong, Ruibo Hu and Gongke Zhou
    Citation: BMC Plant Biology 2016 16:102
  32. The ability to grow in phosphorus-depleted soils is an important trait for rice cultivation in many world regions, especially in the tropics. The Phosphorus Starvation Tolerance 1 (PSTOL1) gene has been identifie...

    Authors: Cynthia C. Vigueira, Linda L. Small and Kenneth M. Olsen
    Citation: BMC Plant Biology 2016 16:101
  33. Molecular markers and knowledge of traits associated with heat tolerance are likely to provide breeders with a more efficient means of selecting wheat varieties able to maintain grain size after heat waves dur...

    Authors: Hamid Shirdelmoghanloo, Julian D. Taylor, Iman Lohraseb, Huwaida Rabie, Chris Brien, Andy Timmins, Peter Martin, Diane E. Mather, Livinus Emebiri and Nicholas C. Collins
    Citation: BMC Plant Biology 2016 16:100
  34. The different actions of abscisic acid (ABA) in the aboveground and belowground parts of plants suggest the existence of a distinct perception mechanism between these organs. Although characterization of the s...

    Authors: Wenqiang Fan, Mengyao Zhao, Suxin Li, Xue Bai, Jia Li, Haowei Meng and Zixin Mu
    Citation: BMC Plant Biology 2016 16:99

    The Correction to this article has been published in BMC Plant Biology 2018 18:73

  35. Chrysanthemum, a leading ornamental species, does not tolerate salinity stress, although some of its related species do. The current level of understanding regarding the mechanisms underlying salinity toleranc...

    Authors: Jiaojiao Gao, Jing Sun, Peipei Cao, Liping Ren, Chen Liu, Sumei Chen, Fadi Chen and Jiafu Jiang
    Citation: BMC Plant Biology 2016 16:98
  36. Microspore embryogenesis describes a stress-induced reprogramming of immature male plant gametophytes to develop into embryo-like structures, which can be regenerated into doubled haploid plants after whole ge...

    Authors: Felix Seifert, Sandra Bössow, Jochen Kumlehn, Heike Gnad and Stefan Scholten
    Citation: BMC Plant Biology 2016 16:97
  37. CRISPR/Cas9 has been recently demonstrated as an effective and popular genome editing tool for modifying genomes of humans, animals, microorganisms, and plants. Success of such genome editing is highly depende...

    Authors: Yi Wang, Xianju Liu, Chong Ren, Gan-Yuan Zhong, Long Yang, Shaohua Li and Zhenchang Liang
    Citation: BMC Plant Biology 2016 16:96
  38. Carotenoids are important pigments and precursors for central signaling molecules associated in fruit development and ripening. Carotenoid metabolism has been studied especially in the climacteric tomato fruit...

    Authors: Katja Karppinen, Laura Zoratti, Marian Sarala, Elisabete Carvalho, Jenni Hirsimäki, Helmi Mentula, Stefan Martens, Hely Häggman and Laura Jaakola
    Citation: BMC Plant Biology 2016 16:95
  39. Drought is a widespread limiting factor in coffee plants. It affects plant development, fruit production, bean development and consequently beverage quality. Genetic diversity for drought tolerance exists with...

    Authors: Luciana Souto Mofatto, Fernanda de Araújo Carneiro, Natalia Gomes Vieira, Karoline Estefani Duarte, Ramon Oliveira Vidal, Jean Carlos Alekcevetch, Michelle Guitton Cotta, Jean-Luc Verdeil, Fabienne Lapeyre-Montes, Marc Lartaud, Thierry Leroy, Fabien De Bellis, David Pot, Gustavo Costa Rodrigues, Marcelo Falsarella Carazzolle, Gonçalo Amarante Guimarães Pereira…
    Citation: BMC Plant Biology 2016 16:94
  40. Single-nucleotide polymorphisms (SNPs) have become the genetic markers of choice in various genetic, ecological, and evolutionary studies. Genotyping-by-sequencing (GBS) is a next-generation-sequencing based m...

    Authors: Weijie Tang, Tingting Wu, Jian Ye, Juan Sun, Yue Jiang, Jun Yu, Jianpeng Tang, Gaoming Chen, Chunming Wang and Jianmin Wan
    Citation: BMC Plant Biology 2016 16:93

    The Erratum to this article has been published in BMC Plant Biology 2016 16:128

  41. ABA-mediated processes are involved in plant responses to water deficit, especially the control of stomatal opening. However in grapevine it is not known if these processes participate in the phenotypic variat...

    Authors: Landry Rossdeutsch, Everard Edwards, Sarah J. Cookson, François Barrieu, Gregory A. Gambetta, Serge Delrot and Nathalie Ollat
    Citation: BMC Plant Biology 2016 16:91
  42. Pectins are a group of structurally complex plant cell wall polysaccharides whose biosynthesis and function remain poorly understood. The pectic polysaccharide rhamnogalacturonan-I (RG-I) has two types of arab...

    Authors: Solomon Stonebloom, Berit Ebert, Guangyan Xiong, Sivakumar Pattathil, Devon Birdseye, Jeemeng Lao, Markus Pauly, Michael G. Hahn, Joshua L. Heazlewood and Henrik Vibe Scheller
    Citation: BMC Plant Biology 2016 16:90
  43. The factors that contribute to and maintain hybrid zones between distinct species are highly variable, depending on hybrid origins, frequencies and fitness. In this study, we aimed to examine genetic origins, ...

    Authors: Dechun Jiang, Jianju Feng, Miao Dong, Guili Wu, Kangshan Mao and Jianquan Liu
    Citation: BMC Plant Biology 2016 16:89
  44. Glyoxalase pathway consists of two enzymes, glyoxalase I (GLYI) and glyoxalase II (GLYII) which detoxifies a highly cytotoxic metabolite methylglyoxal (MG) to its non-toxic form. MG may form advanced glycation...

    Authors: Ajit Ghosh and Tahmina Islam
    Citation: BMC Plant Biology 2016 16:87
  45. Being sessile organisms, plants are often exposed to a wide array of abiotic and biotic stresses. Abiotic stress conditions include drought, heat, cold and salinity, whereas biotic stress arises mainly from ba...

    Authors: Vivek Verma, Pratibha Ravindran and Prakash P. Kumar
    Citation: BMC Plant Biology 2016 16:86
  46. The exon junction complex (EJC), which contains four core components, eukaryotic initiation factor 4AIII (eIF4AIII), MAGO/NASHI (MAGO), Y14/Tsunagi/RNA-binding protein 8A, and Barentsz/Metastatic lymph node 51...

    Authors: Chun-Kai Huang, Yi-Syuan Sie, Yu-Fu Chen, Tian-Sheng Huang and Chung-An Lu
    Citation: BMC Plant Biology 2016 16:84
  47. Dove tree (Davidia involucrata Baill.) is a rare and endangered species. Natural reproduction of dove tree is extremely difficult due to its low fecundity. Serious seed abortion is one of the key factors restrain...

    Authors: Meng Li, Xujie Dong, Jiqing Peng, Wen Xu, Rui Ren, Jane Liu, Fuxiang Cao and Zhiming Liu
    Citation: BMC Plant Biology 2016 16:82

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