# Production of haploids and doubled haploids in oil palm

- Jim M Dunwell†
^{1}Email author, - Mike J Wilkinson†
^{2}Email author, - Stephen Nelson
^{3}, - Sri Wening
^{4}, - Andrew C Sitorus
^{4}, - Devi Mienanti
^{4}, - Yuzer Alfiko
^{4}, - Adam E Croxford
^{2}, - Caroline S Ford
^{2}, - Brian P Forster
^{5}and - Peter DS Caligari
^{3, 5, 6}

**10**:218

https://doi.org/10.1186/1471-2229-10-218

© Dunwell et al; licensee BioMed Central Ltd. 2010

**Received: **2 June 2010

**Accepted: **7 October 2010

**Published: **7 October 2010

## Abstract

### Background

Oil palm is the world's most productive oil-food crop despite yielding well below its theoretical maximum. This maximum could be approached with the introduction of elite F_{1} varieties. The development of such elite lines has thus far been prevented by difficulties in generating homozygous parental types for F_{1} generation.

### Results

Here we present the first high-throughput screen to identify spontaneously-formed haploid (H) and doubled haploid (DH) palms. We secured over 1,000 Hs and one DH from genetically diverse material and derived further DH/mixoploid palms from Hs using colchicine. We demonstrated viability of pollen from H plants and expect to generate 100% homogeneous F_{1} seed from intercrosses between DH/mixoploids once they develop female inflorescences.

### Conclusions

This study has generated genetically diverse H/DH palms from which parental clones can be selected in sufficient numbers to enable the commercial-scale breeding of F_{1} varieties. The anticipated step increase in productivity may help to relieve pressure to extend palm cultivation, and limit further expansion into biodiverse rainforest.

## Keywords

## Background

Success of early F_{1} hybrid maize varieties exemplifies the advantages of heterosis [1]. The use of doubled haploids as parents for F_{1} variety production fully exploits this phenomenon and has enabled substantial yield improvements in several crops [2, 3]. This strategy was outlined with the first DH crop variety [4] and has led to H/DH production systems being described for > 250 species [5]. However, few of these protocols generate the large numbers of Hs/DHs needed for commercial breeding, with just three methods (androgenesis, wide crossing, gynogenesis [6]) routinely adopted for H/DH production in only 30 species [5]. The most important of these methods in widespread use in commercial breeding is the generation of haploids in maize via pollination with a haploid inducing line such as a 'Stock 6' derivative. Desire for a more generic H/DH production system to improve agricultural yields is increasing as population growth, climate change, biofuel demand and other land-use pressures intensify. Clearly, in any species the production of F_{1} varieties depends not only on the production of homozygous lines to act as parents, but also it requires an efficient method to intercross the parents. This latter procedure is relatively simple in species with an outcrossing breeding system, like maize or oil palm, compared with those with an inbreeding system like rice or wheat. Production of F_{1} hybrids has been achieved successfully in this category of crops (for example hybrid rice in China) but often requires a male sterility system.

Annually, oil palm (*Elaeis guineensis*) yields eight to ten times more oil per hectare than rapeseed or soybean [7, 8] and in 2008 generated 38.9 million tonnes of oil worldwide [9]. The area assigned to the crop expanded ~1.7 fold between 1997 (8.7 M ha) and 2007 (14.6 M ha) [9] with further increases forecast. Over this same period global production of palm oil increased ~2.2 fold from 18 to 38.9 Mt y^{-1}. Thus, yield increases have been achieved predominantly by expansion of cultivated area and not through yield enhancement. This trend raises concerns over the ecological impact of felling rainforest to accommodate oil palm cultivation [10, 11] and has stimulated debate over strategies to limit further agricultural expansion [12–14]. One option explored here is to use market forces to help address the problem. If F_{1} varieties could increase yields sufficiently to exceed demand, commodity prices would fall. This would discourage clear felling and simultaneously incentivise early replacement of existing plantations with high-yielding varieties. Feasibility of the approach clearly relies on the ability to gain marked improvements in yield. Current yields of oil palm (generally 4-10.5 t ha^{-1}) [15, 16] are much lower than the most conservative estimates of the crop's potential (17 t ha^{-1} [14] to 60 t ha^{-1} [16]). Indeed, yields per hectare in the two largest producer countries (Indonesia and Malaysia) have remained static for 30 years [9]. It should be noted, however, that in both these countries there are examples of selected varieties with much higher yields, with the highest yields from commercial breeding trials already exceeding 10 t ha^{-1}.

To date, a H/DH-derived F_{1} breeding approach has been precluded by the repeated failure to secure H/DHs via anther or microspore culture [17] and successful generation of H/DHs in oil palm is unreported in the literature. The report of a spontaneous H in the related coconut palm [18] and in other species [19] nevertheless gave hope that spontaneous Hs may also occur in oil palm. However, the characteristically rare occurrence of spontaneous H/DHs necessitates development of an effective high-throughput screening system. Phenotypic characteristics of H/DH (slow growth, altered flowering phenology, smaller stomata and smaller organs [5]) could be used for diagnosis but are difficult to score qualitatively on a large scale and require plants of a reasonable size. An alternative strategy is to seek undefined atypical phenotypic features that may arise from reduced cell size and/or the hemizygous state of haploid individuals (homozygous for DHs) and that are manifest at the seedling stage when high-throughput visual assessment is more plausible. A more directed approach is also possible. Spontaneous H/DH seedlings are often associated with aberrant germination features, such as twin embryos from the same carpel [20], providing a defined feature for phenotypic selection. Here, we combined a large-scale visual survey for undefined atypical palm seedling phenotypes coupled with active selection for seeds with twin embryos to assemble a sub-population of seedlings enriched for H/DHs.

## Results

Microsatellite primer pairs used to identify homozygous DH or hemizygous H candidates in the initial molecular screen.

No. | Forward primer (5'-3') | Reverse primer (5'-3') |
---|---|---|

1 | GAGATTACAAAGTCCAAACC | TCAAAATTAAGAAAGTATGC |

2 | ACGCATGCAGCTAGCTTTTC | CGCGTGAAAGATATGAATCAAC |

3 | CACGCACGCAGTTTATTCTT | GGATGTATGCTTTACCTCCGAAT |

4 | CCCCTTTTGCTTCCCTATTT | CTCCTTTTCCCCATCACAGA |

5 | GACACAAGCAAAAACAAAAGCA | ATTCTGAAAGGAGGGGGAAA |

6 | ATATGTGTGGGTGTGCGTGT | TGCCTCTGGTTGTTAGTCTGG |

7 | TCTCTCTCTCTCTCTCTATGTGTGTGT | TGGCAATCAGCACACATTCT |

8 | GCAGCTCTTTCCACACCTCT | TGTGGTCTCCTGAGGAAGATG |

9 | TTTTCCCCATCACAGAATTG | CCCCTTTTGCTTCCCTATTT |

10 | TAGCCGCACTCCCACGAAGC | CCAGAATCATCAGACTCGGACAG |

11 | AGCTCTCATGCAAGTAAC | TTCAACATACCGTCTGTA |

12 | CCTTCAAGCAAAGATACC | GGCACCAAACACAGTAA |

13 | GTAGCTTGAACCTGAAA | AGAACCACCGGAGTTAC |

14 | GCTCGTTTTTGTTTAGGTGA | TTTTCTCCATAGTCCGTTAC |

15 | CCTCGGGTTATCCTTTTTACC | TGGCTGGCTTCGGTCTTAG |

Results of ploidy analysis by flow cytometry of 117 candidate H/DH palms identified as both morphologically atypical and homozygous for the markers listed in Table 1.

Candidate | DNA sample code | No. markers used | Ploidy |
---|---|---|---|

50-Mix5-7 | 11260406301 | 9 | x |

50-03060367C | 07280501801 | 15 | x |

50-03060260C-2 | 07280501901 | 15 | x |

53-03080954C-2 | 09270500101 | 10 | x |

53-03090761C-5 | 09280504501 | 10 | x |

BATCH 51;03060318C;1 | 060728_0010_01_a | 15 | x |

BATCH 53;03090761C;5 | 060728_0018_01_a | 15 | x |

0623/172;05095508C;1 | 060728_0021_01_a | 15 | x |

BATCH 50;03060260C;2 | 060728_0027_01_a | 15 | x |

0611/32;05050248C;1 | 060728_0032_01_a | 15 | x |

0611/16;05050228C;1 | 060728_0034_01_a | 15 | x |

BATCH 53;03080954C;2 | 060728_0035_01_a | 15 | x |

06 412;04059061B;3 | 060728_0050_01_a | 14 | 2x |

0628/152;05100720C;1 | 060729_0021_01_a | 15 | x |

0628/185;05100351C;1 | 060729_0063_01_a | 15 | x |

BATCH 51;03060626C;1 | 060729_0127_02_a | 15 | x |

BATCH 67;0409034MC;2 | 060729_0130_02_a | 14 | 2x |

BATCH 67;0409034MC;4 | 060729_0131_02_a | 15 | 2x |

BATCH 67;0409034MC;15 | 060729_0132_02_a | 15 | 2x |

BATCH 65;0409034MC;7 | 060729_0134_02_a | 15 | 2x |

BATCH 65;0409034MC;35 | 060729_0138_02_a | 15 | 2x |

BATCH 65;0409034MC;56 | 060729_0139_02_a | 15 | 2x |

BATCH 65;0409034MC;50 | 060729_0141_02_a | 15 | 2x |

BATCH 65;0409034MC;47 | 060729_0142_02_a | 15 | 2x |

0628/53;05090595C;1 | 060731_0043_01_a | 15 | x |

0627/125;05090717C;2 | 060731_0065_01_a | 15 | x |

0627/12;05080220C;1 | 060731_0080_01_a | 15 | x |

0627/6;05080095C;1 | 060731_0086_01_a | 14 | x |

0631/Normal;05039033B;31 | 060731_0265_01_a | 14 | x |

64-0409021MC-34 | 02130604301 | 15 | 2x |

64-0410040MC-1 | 02130604801 | 15 | 2x |

51-03060626C | 02130605301 | 15 | x |

64-0410040MC-20 | 02140600401 | 15 | 2x |

64-0410040MC-16 | 02140600801 | 15 | 2x |

65-0409021MC-2 | 02140601001 | 15 | 2x |

06 412B-04059061B-3 | 02170605501 | 15 | 2x |

06 412B-04129091B | 02170605801 | 15 | 2x |

0550-15/05010827C | 02200602401 | 15 | x |

0550-17/05010442C-1 | 02200602601 | 15 | x |

0550-23/05020059C | 02200603101 | 15 | x |

0550-33/05020568C | 02200603401 | 15 | x |

0550-36/05020420C-2 | 02200603701 | 15 | x |

0550-40/05010880C | 02200607501 | 14 | x |

0551-36/05020511C | 02200607601 | 15 | x |

0551-32/05020361C-1 | 02210600401 | 15 | x |

0552-4/05010836C-2 | 02210600901 | 15 | x |

0552-38/05020501C | 02210603101 | 14 | x |

0552-39/05020415C | 02210603201 | 15 | x |

0552-31/05020858C | 02210603701 | 15 | x |

0552-91/05020375C | 02210603901 | 15 | x |

0552-111/05020626C | 02210607201 | 15 | x |

0552-128/05020558C-1 | 02210607701 | 15 | x |

0601-35/05020946C | 02210608201 | 15 | x |

0601-42/05030201C-6 | 02210609501 | 15 | x |

0601-51/05030224C-2 | 02220600201 | 15 | x |

0607-21/05040317C-3 | 02220601801 | 14 | x |

0606-32/05040240C | 02220606201 | 13 | x |

0601-77/05020961C | 02230600701 | 15 | x |

0601-62/05030147C | 02230601401 | 15 | x |

0601-54/05030462C | 02230601901 | 15 | x |

0551-21/05020271C-1 | 02200605801 | 14 | x |

0601-9/05020843C-2 | 02230603101 | 15 | x |

0602-17/05020631C-1 | 02230605501 | 15 | x |

0607-111/05040970C-1 | 03010600201 | 15 | x |

0607-81/05040578C-1 | 03010600501 | 15 | x |

0607-73/05040573C-1 | 03010605101 | 15 | x |

0607-89/05040748C-3 | 03010605501 | 15 | x |

0607-102/05050016C-2 | 03010606601 | 15 | x |

0608-15/05040519C-3 | 03010606901 | 15 | x |

0608-45/05041003C-1 | 03150603401 | 15 | x |

0610-60/05041024C-2 | 03150604401 | 15 | x |

0610-124/05055039C-1 | 03150604601 | 15 | x |

0609-54/05050089C-2 | 03150604701 | 15 | x |

0610-41/05050352C-1 | 03150606701 | 15 | x |

0609-58/05050255C-1 | 03220600201 | 15 | x |

0610-82/05050099C-2 | 03220601401 | 15 | x |

0610-77/05050353C-1 | 03220602701 | 15 | x |

0610-121/05055090C-1 | 03220603301 | 15 | x |

0610-81/05050099C-1 | 03220605901 | 15 | x |

0609-100/05055311C-1 | 03290600301 | 15 | x |

0610-11/05040938C-1 | 03290601101 | 15 | x |

0610-68/05050376C-3 | 03290602001 | 15 | x |

0610-58/05050344C-1 | 03290602201 | 15 | x |

0610-73/05050594C-3 | 03290603301 | 15 | x |

0611-84/05050714C-4 | 03290605001 | 15 | x |

0611-70/05050223C-1 | 03290606701 | 15 | x |

0611-73/05050351C-1 | 03290608001 | 15 | x |

0610-67/05050376C-2 | 04050600501 | 15 | x |

0610-40/05050102C-2 | 04050600901 | 15 | x |

0611-99/05050544C-1 | 04050602601 | 15 | x |

0611-110/05055011C-1 | 04050603601 | 15 | x |

0612-2/05050017C-1 | 04050609101 | 15 | x |

0612-70/05050530C-1 | 04050609201 | 15 | x |

0612-76/05050512C-1 | 04050610301 | 15 | x |

0611-109/05055144C-1 | 04120600101 | 15 | x |

0611-31/05050220C-1 | 04120600601 | 15 | x |

0611-38/05050284C-4 | 04120600901 | 15 | x |

0611-40/05050171C-1 | 04120601101 | 14 | x |

0612-80/05050713C-1 | 04120603101 | 15 | x |

65-0409034 MC-66 | 060829_0001_02_a | 15 | 2x |

65-0409034 MC-68 | 060829_0002_02_a | 15 | 2x |

65-0409034 MC-72 | 060829_0003_02_a | 14 | 2x |

65-0409034 MC-111 | 060829_0005_02_a | 15 | 2x |

65-0409034 MC-94 | 060829_0011_02_a | 14 | 2x |

65-0409034 MC-120 | 060829_0012_02_a | 15 | 2x |

65-0409034 MC-144 | 060829_0013_02_a | 15 | 2x |

65-0409034 MC-133 | 060829_0015_02_a | 15 | 2x |

65-0409034 MC-187 | 060829_0020_02_a | 15 | 2x |

65-0409034 MC-193 | 060829_0021_02_a | 14 | 2x |

65-0409034 MC-199 | 060829_0023_02_a | 15 | 2x |

65-0409034 MC-135 | 060829_0025_02_a | 15 | 2x |

65-0409034 MC-114 | 060829_0026_02_a | 13 | 2x |

65-0409034 MC-147 | 060829_0027_02_a | 15 | 2x |

65-0409034 MC-36 B | 060829_0030_02_a | 15 | 2x |

65-0409034 MC-39 A | 060829_0031_02_a | 15 | 2x |

65-0409034 MC-73 A | 060829_0034_02_a | 15 | 2x |

65-0409034 MC-71 A | 060829_0035_02_a | 14 | 2x |

^{-8}(see Methods). This palm was therefore deemed a spontaneous DH.

Microsatellite markers (described by Billotte *et al.* [27]) used for a larger-scale survey for hemizygosity of Hs and homozygosity of DH candidates previously identified by the morphological screen, microsatellite pre-screen (15 markers) and flow cytometry screen.

No. | Forward primer (5'-3') | Reverse primer (5'-3') |
---|---|---|

16 | GACCTTTGTCAGCATACTTGGTGTG | GCAGGCCTGAAATCCCAAAT |

17 | ATGCATGTGATTTTATTAGGTGAGA | CGACCCTCAGTCAATCAGTAAG |

18 | AAGCTAGCGACCTATGATTTTAGA | AAACAAGTAATGTGCATAACCTTTC |

19 | CCCACCACCCCTAGCTTCTC | ACCCCGGTCCAAATAAAATC |

20 | AGAGAGAGAGAGTGCGTATG | GTCCCTGTGGCTGCTGTTTC |

21 | GGGTAGCAAACCTTGTATTA | ACTTCCATTGTCTCATTATTCT |

22 | CGAGGCCCAAAAACATTCAC | GGTCCCGATCCCGTCTACTG |

23 | TTGCGGCCCATCGTAATC | TCCCTGCAGTGTCCCTCTTT |

24 | AGGGAATTGGAAGAAAAGAAAG | TCCTGAGCTGGGGTGGTC |

25 | AGCAAGAGCAAGAGCAGAACT | CTTGGGGGCTTCGCTATC |

26 | TAGCCATGCCGCCACCACTT | CAATCCATTAGCGTGCCCTTCT |

27 | CTTACCCCGCCTCCTCTCCT | CGAAATGCCCTTCCTTTACACTA |

28 | CCTTATATCGCACGGGTTCC | TTCTTGGGGTCTCGCTACGG |

29 | GCAAGATGCAATGGAGTTCA | CAAACCGCAGCAAGTCAGA |

30 | GCAAAATTCAAAGAAAACTTA | CTGACAGTGCAGAAAATGTTATAGT |

31 | CGTTCATCCCACCACCTTTC | GCTGCGAGGCCACTGATAC |

32 | GAATGTGGCTGTAAATGCTGAGTG | AAGCCGCATGGACAACTCTAGTAA |

33 | ACATTCCCTCTATTATTCTCAC | GTTTTGTTTGGTATGCTTGT |

34 | AAGCCAACTTCACAGATATGTTGAT | ATGAGCCTAACAAAGCACATTCTAA |

35 | AGTGAGGTATGGTTGATTAGGA | TATTGATAGCATTTGGGATTAG |

36 | CTCCGATGGTCAAGTCAGA | AAATGGGGAAGGCAATAGTG |

37 | GCCGTTCAAGTCAATTAGAC | TTTGGGAGCAAGCATTATCA |

38 | TGCTTCTTGTCCTTGATACA | CCACGTCTACGAAATGATAA |

39 | CACCACATGAAGCAAGCAGT | CCTACCACAACCCCAGTCTC |

40 | TTTTATTTTCCCTCTCTTTTGA | ATTGCGTCTCTTTCCATTGA |

41 | CATATGGCGCACAGGCAC | GCAATACAAGAGCACCCAAAT |

42 | AGTTGGTTTGCTGATTTG | TGTTGCTTCTTTGATTTTC |

43 | GCTGAAGATGAAATTGATGTA | TTCAGGTCCACTTTCATTTA |

44 | ATGACCTAAAAATAAAATCTCAT | ACAGATCATGCTTGCTCACA |

45 | GGTGCAAGAGAGGAGGAATG | TTTGGTAGTCGGGCGTTTTA |

46 | GTTTGGCTTTGGACATG | TCCATCACAGGAGGTATAG |

47 | TGTTTTGTTTCGTGCATGTG | GGCTGACATGCAACACTAAC |

48 | CGGTTTTGTCGCATCTATG | GTCGTCAGGGAACAACAGT |

49 | CAATCATTGGCGAGAGA | CGTCACCTTTCAGGATATG |

50 | GAGCATGACGCAAACAAAGG | GCAACATGTTTGATGCATTAATAGTC |

51 | TCCAAGTAGCAAATGATGAC | TGCCCTGAAACCCTTGA |

52 | GAAGGGGCATTGGATTT | TACCTATTACAGCGAGAGTG |

53 | AACACTCCAGAAGCCAGGTC | GGTTTAGGTATTGGAACTGATAGAC |

54 | GATCCCAATGGTAAAGACT | AAGCCTCAAAAGAAGACC |

55 | TGTGGTTTGAGGCATCTTCT | GCCCACCAAAAGAAAGTAGT |

56 | TAGCCGCACTCCCACGAAGC | CCAGAATCATCAGACTCGGACAG |

57 | TCAAAGAGCCGCACAACAAG | ACTTTGCTGCTTGGTGACTTA |

58 | GGGGATGAGTTTGTTTGTTC | CCTGCTTGGCGAGATGA |

59 | TCTAATGCTCCCAAGGTACA | GGCTTGGTCCACGATCTT |

60 | AGCTCTCATGCAAGTAAC | TTCAACATACCGTCTGTA |

61 | TCCTCACTGCTCCTCTAATC | ACTCCCTATGGACCTTAGTC |

62 | AGGGAGGCGAACGAGAAACA | CGACTGCTGATGGGGAAGAG |

63 | CTACGGACTCACACCTATAT | ATGGTTCATCAATGAGATC |

64 | GTGAGCGATTGAGGGGTGTG | GGGGCTTGATTGAGTATTTCCA |

65 | AGGGCAAGTCATGTTTC | TATAAGGGCGAGGTATT |

66 | GAAGCCTGAGACCGCATAGA | TTCGGTGATGAAGATTGAAG |

67 | TTTCTTATGGCAATCACACG | GGAGGGCAGGAACAAAAAGT |

68 | GTTTATCATTTTGGGGTCAG | CGGTGTCCCTCAGGATGTA |

69 | CATGCACGTAAAGAAAGTGT | CCAAATGCACCCTAAGA |

70 | AATCCAAGTGGCCTACAG | CATGGCTTTGCTCAGTCA |

71 | TGTAGGTGGTGGTTAGG | TGTCAGACCCACCATTA |

72 | AGCAAGACACCATGTAGTC | GACACGTGGGATCTAGAC |

73 | AAAAGCCGATAGTGGGAACA | ATGCTGAGAGGTGGAAAATAGAG |

74 | GTCCATGTGCATAAGAGAG | CTCTTGGCATTTCAGATAC |

75 | AGCCAATGAAGGATAAAGG | CAAGCTAAAACCCCTAATC |

76 | CAATTCCAGCGTCACTATAG | AGTGGCAGTGGAAAAACAGT |

77 | GGGCTTTCATTTTCCACTAT | GCTCAACCTCATCCACAC |

78 | GACAGCTCGTGATGTAGA | GTTCTTGGCCGCTATAT |

79 | ACTTGTAAACCCTCTTCTCA | GTTTCATTACTTGGCTTCTG |

80 | CCTTCAAGCAAAGATACC | GGCACCAAACACAGTAA |

81 | CCACTGCTTCAAATTTACTAG | GCGTCCAAAACATAAATCAC |

82 | GGGAGAGGAAAAAATAGAG | CCTCCCTGAGACTGAGAAG |

83 | AGCAGGGCAAGAGCAATACT | TTCAGCAGCAGGAAACATC |

84 | GCCTATCCCCTGAACTATCT | TGCACATACCAGCAACAGAG |

85 | CATCAGAGCCTTCAAACTAC | AGCCTGAATTGCCTCTC |

86 | ATTCATTGCCATTCCCTTCA | TTGTCCCCTCTGTTCACTCA |

87 | ATTGCAGAGATGATGAGAAG | GAGATGCTGACAATGGTAGA |

88 | TCTCCCAAATCACTAGAC | ATCTGCAAGGCATATTC |

89 | ACGTTTTGGCAACTCTC | ACTCCCCTCTTTGACAT |

90 | TCCACTCTGGCAACTCC | AAGGATGGGCTTTGTAGT |

91 | TTTAGAGGACAAGGAGATAAG | CGACCGTGTCAAGAGTG |

92 | AGCAAAATGGCAAAGGAGAG | GGTGTGTGCTATGGAAGATCATAGT |

93 | GTAGCTTGAACCTGAAA | AGAACCACCGGAGTTAC |

94 | AAGCCACCAGGATCATC | GTCATTGCCACCTCTAACT |

95 | TTACTTGCTAAGCTCTCTAGC | TGGCTGTTTAATCTGTCTG |

96 | TCTATATTTGGTTGGCTTGA | ACTCATTTCAATCTCAGTGTC |

97 | TGCTACGTGCTGAAATA | ATTTCAGGTTCGCTTCA |

98 | CCTCCACTTCTCTTCATCTT | CTTCCTCAAGCTCAAACAAT |

99 | GATGTTGCCGCTGTTTG | CATCCCATTTCCCTCTT |

100 | ATGCTCCACCAAGTTTA | CACATCCTAGCATCATTG |

101 | AAGCAATATAGGTTCAGTTC | TCATTTTCTAATTCCAAACAAG |

102 | GCTCGTTTTTGTTTAGGTGA | TTTTCTCCATAGTCCGTTAC |

103 | CAGCACACAAATGACAT | CACCTTTCCTTTTTGTC |

104 | CCTATTCCTTACCTTTCTGT | GACTTACTATCTTGGCTCAC |

105 | CCTTGCATTCCACTATT | AGTTCTCAAGCCTCACA |

106 | CCTCCTTTGGAATTATG | GTGTTTGATGGGACATACA |

107 | ATTGGAGAGCACTTGGATAG | TTCTCTTCCTTCTCACTTGT |

108 | AGCCAGATGGAAATACAC | GTGCGATAAAGAGGAGAGT |

109 | TAGTTTTCCCATCACAGAGT | ACAATATTTAGACCTTCCATGAG |

110 | GTGCAGATGCAGATTATATG | CCTTTAGAATTGCCGTATC |

111 | ACAATAACCTGAGACAACAAGAAAC | ATACATCCCCTCCCCTCTCT |

112 | GAACTTGGCGTGTAACT | TGGTAGGTCTATTTGAGAGT |

These initial screens collectively revealed 83 spontaneous Hs but no DHs (although one DH was discovered subsequently), with the undirected phenotypic 'off-type' selection proving substantially more effective than screening for twin embryos. This result suggests that our method could be used to secure large numbers of Hs but is less able to isolate DHs at useful frequencies. This finding, when coupled with the routine nature of H chromosome doubling in other crops [21], suggested the most promising route for commercial DH production lay in the isolation of Hs followed by somatic doubling. In subsequent screening of abnormal seedlings, high-throughput flow cytometry therefore replaced molecular analysis for candidate H identification. Haploid identity was then supported using at least 15 microsatellite markers. Plants identified as diploid by flow cytometry continued to be screened for DHs as above. Using this amended screening procedure, we have identified over 1,100 H palms from approximately 60 million seedlings (to July 2009).

_{3.}To date, 16 H genotypes have produced pollen. This finding demonstrates scope for securing fertile gametes from diploid inflorescences or inflorescence sectors for DH or F

_{1}production. Indeed, seed set using pollen from DH material has now been achieved (data not shown). Whilst further optimization work is required, our results when combined with experience in other crops [21] suggest routine production of fertile DH oil palm lines will be a relatively simple task.

## Discussion and Conclusions

The simple high-throughput phenotypic-genotypic seedling selection system used here provides a fourth practical approach to supplement androgenesis, wide crossing and gynogenesis [6] and has potential for many crops where H/DH production remains elusive. The prospect of adopting a similar untargeted approach more widely seems both plausible and attractive, and may be possible without experienced operators, especially as sophisticated phenomic screening systems [22] become more accessible.

In the case of oil palm, the efficacy of our H screening combined with the demonstrated ability to create DH palms, opens the way for the development of 100% true-breeding parental clones for F_{1} variety breeding. Thereafter, it is hoped that the potential genetic gain available from oil palm F_{1} hybrids will match that in other crops. If such a gain is achieved it could be beneficial in several ways. First, high-yielding F_{1} palms are likely to accelerate replacement of palms in existing plantations and cause a step-increase in production. Secondly, this breeding strategy provides greater flexibility for breeders to respond rapidly to emergent threats (e.g. climate change). Thirdly, using palm oil and its associated wastes for energy generation [7] could substantially reduce carbon-based emissions currently associated with the palm oil lifecycle [23]. Fourthly, DH oil palms could be exploited in combination with transgenic techniques that are now available for this crop [24]. Looking forward, the clear challenge is to maintain and improve oil palm productivity in the face of a changing climate sufficient to keep pace with growing demand [25]. However, it is important to point out that breeding is simply one stage in a long process from plantation to the eventual processed product and the economic realities of this international industry will finally determine the impact of any novel technology on the global agricultural system for this crop.

The provision here of a system for haploid-based F_{1} hybrid breeding in oil palm represents the first technological breakthrough likely to lead to step improvements in yield for this crop, and can also be applied to other crops recalcitrant to *in vitro* based H/DH systems. This methodology, in particular the application of high-throughput flow cytometry, has recently been applied successfully to two other tropical crops, namely rubber (*Hevea brasiliensis* L.) and cocoa (*Theobroma cacao* L.) (Nasution et al. unpublished).

## Methods

### Seed morphological screen

For seed storage, mesocarps were removed from freshly harvested seed, and seeds air-dried at ambient temperature (24 h). Seeds were thereafter stored at 25°C with 15-18% moisture content. To induce germination, stored seeds were re-hydrated over 3 d to 18-20% moisture content, followed by 38-40°C incubation (40-60 d). Seeds were then re-hydrated for a further 5 d to >22% moisture content, and air-dried at ambient temperature (4 h). Seeds were germinated at ambient temperature (7 d to 3 months after treatment) and examined for atypical germination morphology (Figure 1).

### Molecular pre-screen to exclude heterozygotes

_{4}buffer (Bioline), 0.3 μl MgCl

_{2}(10 mM), 0.4 μl dNTPs (10 mM), 0.2 μl each primer (10 mM), 1-5 ng DNA and 1U

*Taq*polymerase (Bioline). Thermocycling conditions: 2 min at 94°C followed by 35 cycles of 94°C for 30 s, 52-58°C for 30 s and 72°C for 45 s, with a final extension of 72°C for 7 min. Candidates presenting two allelic bands after fractionation by (2-3% w/v metaphor) agarose gel electrophoresis were discarded.

### Extended molecular screen

Candidate DHs and some Hs were subjected to an extensive assay for heterozygosity using 97 fluorescently-labelled microsatellites (Table 3) with 150 seedlings of normal phenotype and 24 heterozygous tenera palms as controls. PCR conditions were as described above and resultant products were fractionated on an ABI3730XL capillary sequencer (Applied Biosystems, USA) by Macrogen Inc (Korea). Allele size was determined (Genemapper v4.0) against a GS400HD standard. Individuals with two alleles at any locus were discarded.

### DH candidate verification

*et al.*[26] using the candidate as the reference comparator. Samples with amplicons variable between the maternal parent and candidate DH were fractionated by capillary electrophoresis as above. 48 markers identified as heterozygous in the maternal parent (Table 5) were applied to the DH candidate to assess homozygosity.

Microsatellite markers used to screen for heterozygosity on the maternal parent (palm BL013/12-06) of DH candidate palm (0644-219/05049582C).

No | Marker | Forward Primer (5'-3') | Reverse Primer (5'-3') |
---|---|---|---|

1 | VS1 | GAGATTACAAAGTCCAAACC | TCAAAATTAAGAAAGTATGC |

2 | OPSSR 3 | ACGCATGCAGCTAGCTTTTC | CGCGTGAAAGATATGAATCAAC |

3 | OPSSR 7 | CACGCACGCAGTTTATTCTT | GGATGTATGCTTTACCTCCGAAT |

4 | OPSSR 8 | CCCCTTTTGCTTCCCTATTT | CTCCTTTTCCCCATCACAGA |

5 | OPSSR 9 | GACACAAGCAAAAACAAAAGCA | ATTCTGAAAGGAGGGGGAAA |

6 | OPSSR 14 | ATATGTGTGGGTGTGCGTGT | TGCCTCTGGTTGTTAGTCTGG |

7 | OPSSR 19 | TCTCTCTCTCTCTCTCTATGTGTGTGT | TGGCAATCAGCACACATTCT |

8 | OPSSR 29 | GCAGCTCTTTCCACACCTCT | TGTGGTCTCCTGAGGAAGATG |

9 | OPSSR 30 | TTTTCCCCATCACAGAATTG | CCCCTTTTGCTTCCCTATTT |

10 | OPSSR32 | GAACAAAACGGGAAGAAGCA | CCTCAAATGGGAGAAACCAG |

11 | mEgUWA07 | CGGATAGAGGCAGCAAGACT | CTCGGGTTGTTTAACCCATT |

12 | mEgUWA44 | TTGAGACGTCGTTCCTTTCC | AGCGGAGACCCAATAATCCT |

13 | mEgUWA50 | CCTGCAACTGCAAATGAGAC | TCCAGACACAAACTACACACACC |

14 | mEgCIR0037 | Published by Billotte | |

15 | mEgCIR0055 | Published by Billotte | |

16 | mEgCIR0059 | Published by Billotte | |

17 | mEgCIR0067 | Published by Billotte | |

18 | mEgCIR0074 | Published by Billotte | |

19 | mEgCIR0146 | Published by Billotte | |

20 | mEgCIR0163 | Published by Billotte | |

21 | mEgCIR0173 | Published by Billotte | |

22 | mEgCIR0177 | Published by Billotte | |

23 | mEgCIR0192 | Published by Billotte | |

24 | mEgCIR0195 | Published by Billotte | |

25 | mEgCIR0243 | Published by Billotte | |

26 | mEgCIR0246 | Published by Billotte | |

27 | mEgCIR0257 | Published by Billotte | |

28 | mEgCIR0268 | Published by Billotte | |

29 | mEgCIR0328 | Published by Billotte | |

30 | mEgCIR0359 | Published by Billotte | |

31 | mEgCIR0366 | Published by Billotte | |

32 | mEgCIR0369 | Published by Billotte | |

33 | mEgCIR0380 | Published by Billotte | |

34 | mEgCIR0399 | Published by Billotte | |

35 | mEgCIR0408 | Published by Billotte | |

36 | mEgCIR0409 | Published by Billotte | |

37 | mEgCIR0425 | Published by Billotte | |

38 | mEgCIR0433 | Published by Billotte | |

39 | mEgCIR0439 | Published by Billotte | |

40 | mEgCIR0445 | Published by Billotte | |

41 | mEgCIR0446 | Published by Billotte | |

42 | mEgCIR0465 | Published by Billotte | |

43 | mEgCIR0521 | Published by Billotte | |

44 | mEgCIR0551 | Published by Billotte | |

45 | mEgCIR0555 | Published by Billotte | |

46 | mEgCIR0588 | Published by Billotte | |

47 | mEgCIR0772 | Published by Billotte | |

48 | mEgCIR0773 | Published by Billotte | |

49 | mEgCIR0774 | Published by Billotte | |

50 | mEgCIR0775 | Published by Billotte | |

51 | mEgCIR0778 | Published by Billotte | |

52 | mEgCIR0779 | Published by Billotte | |

53 | mEgCIR0781 | Published by Billotte | |

54 | mEgCIR0786 | Published by Billotte | |

55 | mEgCIR0787 | Published by Billotte | |

56 | mEgCIR0788 | Published by Billotte | |

57 | mEgCIR0790 | Published by Billotte | |

58 | mEgCIR0793 | Published by Billotte | |

59 | mEgCIR0800 | Published by Billotte | |

60 | mEgCIR0801 | Published by Billotte | |

61 | mEgCIR0802 | Published by Billotte | |

62 | mEgCIR0803 | Published by Billotte | |

63 | mEgCIR0804 | Published by Billotte | |

64 | mEgCIR0825 | Published by Billotte | |

65 | mEgCIR0827 | Published by Billotte | |

66 | mEgCIR0844 | Published by Billotte | |

67 | mEgCIR0874 | Published by Billotte | |

68 | mEgCIR0878 | Published by Billotte | |

69 | mEgCIR0882 | Published by Billotte | |

70 | mEgCIR0886 | Published by Billotte | |

71 | mEgCIR0894 | Published by Billotte | |

72 | mEgCIR0905 | Published by Billotte | |

73 | mEgCIR0906 | Published by Billotte | |

74 | mEgCIR0910 | Published by Billotte | |

75 | mEgCIR0912 | Published by Billotte | |

76 | mEgCIR1729 | Published by Billotte | |

77 | mEgCIR1740 | Published by Billotte | |

78 | mEgCIR1753 | Published by Billotte | |

79 | mEgCIR1773 | Published by Billotte | |

80 | mEgCIR1917 | Published by Billotte | |

81 | mEgCIR1977 | Published by Billotte | |

82 | mEgCIR1996 | Published by Billotte | |

83 | mEgCIR2110 | Published by Billotte | |

84 | mEgCIR2144 | Published by Billotte | |

85 | mEgCIR2149 | Published by Billotte | |

86 | mEgCIR2188 | Published by Billotte | |

87 | mEgCIR2212 | Published by Billotte | |

88 | mEgCIR2215 | Published by Billotte | |

89 | mEgCIR2380 | Published by Billotte | |

90 | mEgCIR2387 | Published by Billotte | |

91 | mEgCIR2414 | Published by Billotte | |

92 | mEgCIR2417 | Published by Billotte | |

93 | mEgCIR2422 | Published by Billotte | |

94 | mEgCIR2423 | Published by Billotte | |

95 | mEgCIR2427 | Published by Billotte | |

96 | mEgCIR2436 | Published by Billotte | |

97 | mEgCIR2440 | Published by Billotte | |

98 | mEgCIR2492 | Published by Billotte | |

99 | mEgCIR2518 | Published by Billotte | |

100 | mEgCIR2525 | Published by Billotte | |

101 | mEgCIR2569 | Published by Billotte | |

102 | mEgCIR2575 | Published by Billotte | |

103 | mEgCIR2577 | Published by Billotte | |

104 | mEgCIR2590 | Published by Billotte | |

105 | mEgCIR2595 | Published by Billotte | |

106 | mEgCIR2600 | Published by Billotte | |

107 | mEgCIR2621 | Published by Billotte | |

108 | mEgCIR2628 | Published by Billotte | |

109 | mEgCIR2763 | Published by Billotte | |

110 | mEgCIR2813 | Published by Billotte | |

111 | mEgCIR2860 | Published by Billotte | |

112 | mEgCIR2887 | Published by Billotte | |

113 | mEgCIR2893 | Published by Billotte | |

114 | mEgCIR3040 | Published by Billotte | |

115 | mEgCIR3111 | Published by Billotte | |

116 | mEgCIR3160 | Published by Billotte | |

117 | mEgCIR3194 | Published by Billotte | |

118 | mEgCIR3213 | Published by Billotte | |

119 | mEgCIR3232 | Published by Billotte | |

120 | mEgCIR3295 | Published by Billotte | |

121 | mEgCIR3296 | Published by Billotte | |

122 | mEgCIR3297 | Published by Billotte | |

123 | mEgCIR3298 | Published by Billotte | |

124 | mEgCIR3300 | Published by Billotte | |

125 | mEgCIR3301 | Published by Billotte | |

126 | mEgCIR3305 | Published by Billotte | |

127 | mEgCIR3307 | Published by Billotte | |

128 | mEgCIR3310 | Published by Billotte | |

129 | mEgCIR3311 | Published by Billotte | |

130 | mEgCIR3316 | Published by Billotte | |

131 | mEgCIR3321 | Published by Billotte | |

132 | mEgCIR3328 | Published by Billotte | |

133 | mEgCIR3350 | Published by Billotte | |

134 | mEgCIR3384 | Published by Billotte | |

135 | mEgCIR3389 | Published by Billotte | |

136 | mEgCIR3399 | Published by Billotte | |

137 | mEgCIR3400 | Published by Billotte | |

138 | mEgCIR3402 | Published by Billotte | |

139 | mEgCIR3427 | Published by Billotte | |

140 | mEgCIR3428 | Published by Billotte | |

141 | mEgCIR3433 | Published by Billotte | |

142 | mEgCIR3439 | Published by Billotte | |

143 | mEgCIR3477 | Published by Billotte | |

144 | mEgCIR3519 | Published by Billotte | |

145 | mEgCIR3526 | Published by Billotte | |

146 | mEgCIR3533 | Published by Billotte | |

147 | mEgCIR3534 | Published by Billotte | |

148 | mEgCIR3535 | Published by Billotte | |

149 | mEgCIR3538 | Published by Billotte | |

150 | mEgCIR3543 | Published by Billotte | |

151 | mEgCIR3544 | Published by Billotte | |

152 | mEgCIR3546 | Published by Billotte | |

153 | mEgCIR3555 | Published by Billotte | |

154 | mEgCIR3557 | Published by Billotte | |

155 | mEgCIR3563 | Published by Billotte | |

156 | mEgCIR3567 | Published by Billotte | |

157 | mEgCIR3569 | Published by Billotte | |

158 | mEgCIR3574 | Published by Billotte | |

159 | mEgCIR3587 | Published by Billotte | |

160 | mEgCIR3590 | Published by Billotte | |

161 | mEgCIR3592 | Published by Billotte | |

162 | mEgCIR3593 | Published by Billotte | |

163 | mEgCIR3607 | Published by Billotte | |

164 | mEgCIR3622 | Published by Billotte | |

165 | mEgCIR3633 | Published by Billotte | |

166 | mEgCIR3639 | Published by Billotte | |

167 | mEgCIR3643 | Published by Billotte | |

168 | mEgCIR3649 | Published by Billotte | |

169 | mEgCIR3653 | Published by Billotte | |

170 | mEgCIR3655 | Published by Billotte | |

171 | mEgCIR3663 | Published by Billotte | |

172 | mEgCIR3668 | Published by Billotte | |

173 | mEgCIR3672 | Published by Billotte | |

174 | mEgCIR3683 | Published by Billotte | |

175 | mEgCIR3684 | Published by Billotte | |

176 | mEgCIR3691 | Published by Billotte | |

177 | mEgCIR3693 | Published by Billotte | |

178 | mEgCIR3696 | Published by Billotte | |

179 | mEgCIR3698 | Published by Billotte | |

180 | mEgCIR3705 | Published by Billotte | |

181 | mEgCIR3711 | Published by Billotte | |

182 | mEgCIR3716 | Published by Billotte | |

183 | mEgCIR3718 | Published by Billotte | |

184 | mEgCIR3722 | Published by Billotte | |

185 | mEgCIR3727 | Published by Billotte | |

186 | mEgCIR3728 | Published by Billotte | |

187 | mEgCIR3732 | Published by Billotte | |

188 | mEgCIR3737 | Published by Billotte | |

189 | mEgCIR3739 | Published by Billotte | |

190 | mEgCIR3745 | Published by Billotte | |

191 | mEgCIR3747 | Published by Billotte | |

192 | mEgCIR3750 | Published by Billotte | |

193 | mEgCIR3755 | Published by Billotte | |

194 | mEgCIR3766 | Published by Billotte | |

195 | mEgCIR3769 | Published by Billotte | |

196 | mEgCIR3775 | Published by Billotte | |

197 | mEgCIR3782 | Published by Billotte | |

198 | mEgCIR3785 | Published by Billotte | |

199 | mEgCIR3787 | Published by Billotte | |

200 | mEgCIR3788 | Published by Billotte | |

201 | mEgCIR3792 | Published by Billotte | |

202 | mEgCIR3807 | Published by Billotte | |

203 | mEgCIR3808 | Published by Billotte | |

204 | mEgCIR3809 | Published by Billotte | |

205 | mEgCIR3813 | Published by Billotte | |

206 | mEgCIR3819 | Published by Billotte | |

207 | mEgCIR3825 | Published by Billotte | |

208 | mEgCIR3826 | Published by Billotte | |

209 | mEgCIR3828 | Published by Billotte | |

210 | mEgCIR3847 | Published by Billotte | |

211 | mEgCIR3850 | Published by Billotte | |

212 | mEgCIR3869 | Published by Billotte |

Markers shown to be heterozygous in the maternal parent (palm BL013/12-06) and homozygous in the DH candidate (0644-219/05049582C).

No | Marker | Linkage Group |
---|---|---|

1 | mEgCIR0268 | 1 |

2 | mEgCIR0874 | 1 |

3 | mEgCIR3847 | 1 |

4 | mEgCIR2149 | 2 |

5 | mEgCIR2518 | 3 |

6 | mEgCIR0425 | 3 |

7 | mEgCIR3544 | 3 |

8 | mEgCIR3716 | 4 |

9 | mEgCIR1917 | 4 |

10 | mEgCIR3535 | 4 |

11 | mEgCIR3310 | 4 |

12 | mEgCIR3705 | 4 |

13 | mEgCIR3477 | 4 |

14 | mEgCIR0059 | 4 |

15 | mEgCIR3557 | 4 |

16 | mEgCIR2813 | 5 |

17 | mEgCIR3543 | 6 |

18 | mEgCIR0195 | 6 |

19 | mEgCIR0894 | 7 |

20 | mEgCIR0905b | 7 |

21 | mEgCIR0774 | 8 |

22 | mEgCIR2440 | 8 |

23 | mEgCIR0825 | 10 |

24 | mEgCIR3826 | 10 |

25 | mEgCIR0788 | 10 |

26 | mEgCIR2628 | 10 |

27 | mEgCIR0146 | 10 |

28 | mEgCIR0878 | 11 |

29 | mEgCIR1773 | 12 |

30 | mEgCIR3311 | 12 |

31 | mEgCIR0779 | 14 |

32 | mEgCIR0588 | 14 |

33 | mEgCIR3737 | 15 |

34 | mEgCIR3850 | 15 |

35 | mEgCIR3639 | 16 |

36 | mEgCIR0905a | 16 |

37 | mEgCIR3739 | unlinked |

38 | mEgCIR3160 | unmapped |

39 | mEgCIR3360 | unmapped |

40 | mEgCIR0801 | unmapped |

41 | mEgCIR2577 | unmapped |

42 | OPSSR14 | unmapped |

43 | OPSSR30 | unmapped |

44 | OPSSR32 | unmapped |

45 | mEgUWA44 | unmapped |

46 | mEgUWA50 | unmapped |

47 | mEgUWA07 | unmapped |

48 | VS1 | unmapped |

DH candidate 0644-219/05049582C was found to be homozygous across all 48 loci that were heterozygous in its maternal parent. Of these 48 loci, 36 have been mapped by Billotte *et al.* [27] (Table 5). We first considered the probability of obtaining the observed homozygosity levels via independent assortment using only the unlinked markers from this group. For unlinked loci, the probability of homozygous offspring arising by independent assortment is 0.5 per locus. Given that heterozygous loci were secured from 14 of the 16 linkage groups, with the addition of a further unlinked (unassigned) marker, the probability of these markers all becoming homozygous by chance is therefore: *P* = 0.5^{15} = 0.000030517578125.

### Flow Cytometry

Newly matured leaflets or radicles from candidate H/DH palms were subjected to flow cytometry according to Anumaganathan & Earle [29] to establish ploidy level. Commercial tenera palms were included as diploid controls. For high-throughput mass screening, tissue samples were bulked at a rate of five individual tissue samples per bulk. Bulked samples (about 0.5 cm^{2} for radicles and 1 cm^{2} for leaf material (per each individual) were sliced by chopping with a sharp clean razor-blade (20-30 chops), in a plastic 9 cm diameter Petri dish containing 1.5 ml of cold (5°C) CyStain^{®} UV Ploidy solution (Partec, Germany) modified by addition of 6.48 mM dithiothreitol (DTT) and 1% (v/v) polyvinylpyrrolidone (PVP-40) (Sigma-Aldrich, USA). The addition of DTT and PVP-40 were found to reduce background counts ('noise') in output histograms of particle fluorescence in the analyte.

### Confirmation of Hs by chromosome squashes

Harvested roots were pre-treated in iced water (24 h), then fixed in 3:1 v/v alcohol: glacial acetic acid at 4°C (24 h). They were then rinsed in water, softened in 1N HCl (20 min), rinsed in water (2 min) and stained in saturated aceto-orcein (1 min). The root tip was then squashed, mounted onto a glass slide, and examined using a compound photomicroscope.

### Principal Coordinates Analysis

*N × N*) genetic distances are calculated for codominant data. For a single-locus analysis, with

*i*-th,

*j*-th,

*k*-th and

*l*-th different alleles, a set of squared distances is defined as

*d*

^{2}(

*ii, ii*) = 0,

*d*

^{2}(

*ij, ij*) = 0,

*d*

^{2}(

*ii, ij*) = 1,

*d*

^{2}(

*ij, ik*) = 1,

*d*

^{2}(

*ij, kl*) = 2,

*d*

^{2}(

*ii, jk*) = 3, and

*d*

^{2}(

*ii, jj*) = 4. The algorithm used in GenAlEx is based on Orloci [31] using distance matrix with standardization (by dividing the distance inputs by the square root of

*n-1*). Here, Hs were treated as the DHs they were assumed to generate; thus genotypes were homozygous not hemizygous.

Identification codes, oil palm type and ploidy level of oil palm genotypes used in the Principal Coordinates Analysis

No | Label no in PCO | Sample name in PCO | Palm Id | Ploidy level |
---|---|---|---|---|

1 | 1 | haploid | 05020271_0001 | x |

2 | 2 | haploid | 05050099_0001 | x |

3 | 3 | haploid | 05050099_0002 | x |

4 | 4 | haploid | 05020961_0001 | x |

5 | 5 | haploid | 05020511_0001 | x |

6 | 6 | haploid | 05020946_0001 | x |

7 | 8 | haploid | 05030147_0001 | x |

8 | 9 | haploid | 05030462_0001 | x |

9 | 10 | haploid | 05020420_0002 | x |

10 | 11 | haploid | 05020361_0001 | x |

11 | 12 | haploid | 05030060_0001 | x |

12 | 13 | haploid | 05020558_0001 | x |

13 | 14 | haploid | 05020631_0001 | x |

14 | 15 | haploid | 05040748_0003 | x |

15 | 16 | haploid | 05030308_0001 | x |

16 | 18 | haploid | 05080318_0003 | x |

17 | 19 | haploid | 06020186_0001 | x |

18 | 20 | haploid | 05110212_0001 | x |

19 | 21 | haploid | 05120555_0001 | x |

20 | 22 | haploid | 06011022_0001 | x |

21 | 23 | haploid | 05020059_0001 | x |

22 | 24 | haploid | 06020320_0004 | x |

23 | 25 | haploid | 06020571_0004 | x |

24 | 26 | haploid | 06020381_0001 | x |

25 | 27 | haploid | 05060119_0001 | x |

26 | 28 | haploid | 05090172_0001 | x |

27 | 30 | haploid | 05100321_0001 | x |

28 | 31 | haploid | 06010670_0006 | x |

29 | 32 | haploid | 06010842_0004 | x |

30 | 33 | haploid | 05050228_0001 | x |

31 | 34 | haploid | 05110260_0001 | x |

32 | 35 | haploid | 05110260_0002 | x |

33 | 36 | haploid | 05110162_0001 | x |

34 | 37 | haploid | 05101030_0001 | x |

35 | 38 | haploid | 05040273_0001 | x |

36 | 39 | haploid | 05110003_0001 | x |

37 | 40 | haploid | 05120002_0001 | x |

38 | 41 | haploid | 05080095_0001 | x |

39 | 43 | haploid | 06110122_0002 | x |

40 | 44 | haploid | 05110716_0001 | x |

41 | 45 | haploid | 05010836_0001 | x |

42 | 46 | haploid | 05120155_0001 | x |

43 | 47 | haploid | 05110875_0001 | x |

44 | 48 | haploid | 05070553_0001 | x |

45 | 49 | haploid | 05070466_0001 | x |

46 | 50 | haploid | 06010650_0001 | x |

47 | 51 | haploid | 05110718_0001 | x |

48 | 52 | haploid | 05110496_0001 | x |

49 | 53 | haploid | 06010107_0001 | x |

50 | 54 | haploid | 05120429_0002 | x |

51 | 55 | haploid | 06010953_0001 | x |

52 | 56 | haploid | 05030686_0001 | x |

53 | 57 | haploid | 05060107_0001 | x |

54 | 58 | haploid | 05030791_0001 | x |

55 | 59 | haploid | 05080585_0001 | x |

56 | 60 | haploid | 05020375_0001 | x |

57 | 61 | haploid | 05121048_0001 | x |

58 | 62 | haploid | 05055090_0001 | x |

59 | 63 | haploid | 05121004_0002 | x |

60 | 64 | haploid | 06030064_0001 | x |

61 | 65 | haploid | 05121061_0004 | x |

62 | 66 | haploid | 05060276_0001 | x |

63 | 67 | haploid | 05100988_0001 | x |

64 | 68 | haploid | 05060315_0001 | x |

65 | 69 | haploid | 06030324_0003 | x |

66 | 70 | haploid | 05080506_0001 | x |

67 | 71 | haploid | 06010813_0001 | x |

68 | 72 | haploid | 05110881_0001 | x |

69 | 73 | haploid | 05100717_0001 | x |

70 | 74 | haploid | 06020169_0009 | x |

71 | 75 | haploid | 05110134_0001 | x |

72 | 76 | haploid | 05030196_0001 | x |

73 | 77 | haploid | 05050220_0001 | x |

74 | 78 | haploid | 06011195_0001 | x |

75 | 79 | haploid | 05120725_0001 | x |

76 | 80 | haploid | 05100510_0001 | x |

77 | 81 | haploid | 05060624_0001 | x |

78 | 82 | haploid | 05060712_0001 | x |

79 | 83 | haploid | 05030150_0001 | x |

80 | 84 | haploid | 06030180_0001 | x |

81 | 85 | haploid | 06020915_0001 | x |

82 | 86 | haploid | 05101150_0003 | x |

83 | 87 | haploid | 05101152_0001 | x |

84 | 88 | haploid | 05020415_0001 | x |

85 | 89 | haploid | 05040029_0002 | x |

86 | 90 | haploid | 05040035_0003 | x |

87 | 91 | haploid | 06020573_0001 | x |

88 | 93 | haploid | 05121112_0008 | x |

89 | 94 | haploid | 05090078_0001 | x |

90 | 95 | haploid | 05060495_0001 | x |

91 | 96 | haploid | 05070484_0001 | x |

92 | 97 | haploid | 06020455_0001 | x |

93 | 98 | haploid | 05075185_0001 | x |

94 | 99 | haploid | 05090522_0004 | x |

95 | 100 | haploid | 06020625_0002 | x |

96 | 101 | haploid | 05100812_0002 | x |

97 | 102 | haploid | 05100862_0001 | x |

98 | 103 | haploid | 05030224_0002 | x |

99 | 104 | haploid | 05040439_0001 | x |

100 | 105 | haploid | 05040317_0003 | x |

101 | 106 | haploid | 05080030_0001 | x |

102 | 107 | haploid | 05070703_0003 | x |

103 | 108 | haploid | 05080485_0001 | x |

104 | 109 | haploid | 05110470_0002 | x |

105 | 110 | haploid | 05100423_0001 | x |

106 | 111 | haploid | 05110423_0001 | x |

107 | 112 | haploid | 05080362_0003 | x |

108 | 113 | haploid | 05110625_0001 | x |

109 | 114 | haploid | 05120719_0001 | x |

110 | 115 | haploid | 05121073_0002 | x |

111 | 116 | haploid | 06050726_0002 | x |

112 | 117 | haploid | 06060063_0001 | x |

113 | 119 | haploid | 06121220_0001 | x |

114 | 120 | haploid | 06080516_0001 | x |

115 | 121 | haploid | 06090505_0002 | x |

116 | 122 | haploid | 06090407_0004 | x |

117 | 123 | haploid | 06051133_0002 | x |

118 | 124 | haploid | 06060740_0031 | x |

119 | 125 | haploid | 06060740_0077 | x |

120 | 126 | haploid | 06060740_0090 | x |

121 | 127 | haploid | 06120178_0001 | x |

122 | 128 | haploid | 06090960_0003 | x |

123 | 129 | haploid | 06090657_0001 | x |

124 | 130 | haploid | 06120377_0001 | x |

125 | 131 | haploid | 06070208_0001 | x |

126 | 132 | haploid | 07010308_0001 | x |

127 | 133 | haploid | 06121125_0001 | x |

128 | 134 | haploid | 06121125_0002 A | x |

129 | 135 | haploid | 06121125_0002 B | x |

130 | 136 | haploid | 06019052_0005 | x |

131 | 137 | haploid | 06129197_0001 | x |

132 | 138 | haploid | 06079077_0001 | x |

133 | 139 | haploid | 07019130_0003 | x |

134 | 140 | haploid | 06075474_0001 | x |

135 | 141 | haploid | 06075474_0003 | x |

136 | 142 | haploid | 06075544_0001 | x |

137 | 143 | haploid | 06045801_0001 | x |

138 | 144 | haploid | 06065285_0001 | x |

139 | 145 | haploid | 06081027_0001 | x |

140 | 146 | haploid | 06090264_0001 | x |

141 | 147 | haploid | 06090264_0002 | x |

142 | 148 | haploid | 06070430_0001 | x |

143 | 149 | haploid | 06090861_0001 | x |

144 | 150 | haploid | 06051245_0001 | x |

145 | 151 | haploid | 06070716_0001 | x |

146 | 152 | haploid | 06051468_0001 | x |

147 | 153 | haploid | 06075617_0001 | x |

148 | 154 | haploid | 06040273_0001 | x |

149 | 155 | haploid | 06080584_0001 | x |

150 | 156 | haploid | 06070825_0001 | x |

151 | 158 | haploid | 06110390_0015 | x |

152 | 159 | haploid | 06031385_0001 | x |

153 | 160 | haploid | 06045657_0001 | x |

154 | 161 | haploid | 06110204_0008 | x |

155 | 162 | haploid | 06050161_0001 | x |

156 | 163 | haploid | 06071068_0010 | x |

157 | 164 | haploid | 06100785_0002 | x |

158 | 165 | haploid | 06010987_0028 | x |

159 | 166 | haploid | 07010166_0001 | x |

160 | 167 | haploid | 06100730_0001 | x |

161 | 168 | haploid | 06080681_0001 | x |

162 | 169 | haploid | 06080532_0005 | x |

163 | 170 | haploid | 06040024_0001 | x |

164 | 172 | haploid | 06080217_0010 | x |

165 | 173 | haploid | 06120975_0001 | x |

166 | 174 | haploid | 06070581_0002 | x |

167 | 175 | haploid | 06060477_0001 | x |

168 | 176 | haploid | 06120852_0001 | x |

169 | 177 | haploid | 06091392_0001 | x |

170 | 178 | haploid | 06060344_0001 | x |

171 | 179 | haploid | 06090211_0001 | x |

172 | 180 | haploid | 06100858_0001 | x |

173 | 181 | haploid | 06080272_0007 | x |

174 | 182 | haploid | 06050493_0004 | x |

175 | 183 | haploid | 06101033_0002 | x |

176 | 184 | haploid | 06081043_0001 | x |

177 | 185 | haploid | 07011057_0001 | x |

178 | 186 | haploid | 06070921_0001 | x |

179 | 187 | haploid | 06111210_0002 | x |

180 | 188 | haploid | 06121495_0001 | x |

181 | 189 | haploid | 06110610_0001 | x |

182 | 190 | haploid | 06090772_0001 | x |

183 | 191 | haploid | 06090318_0002 | x |

184 | 192 | haploid | 06121313_0001 | x |

185 | 193 | haploid | 06085027_0001 | x |

186 | 194 | haploid | 06090109_0001 | x |

187 | 195 | haploid | 06080157_0001 | x |

188 | 196 | haploid | 06121316_0001 | x |

189 | 197 | haploid | 06110900_0001 | x |

190 | 198 | haploid | 06070228_0002 | x |

191 | 199 | haploid | 06101174_0001 | x |

192 | 200 | haploid | 06060805_0001 | x |

193 | 201 | haploid | 06085063_0001 | x |

194 | 202 | haploid | 06101037_0001 | x |

195 | 203 | haploid | 06110444_0002 | x |

196 | 204 | haploid | 06101487_0001 | x |

197 | 205 | haploid | 06100937_0001 | x |

198 | 206 | haploid | 06090820_0002 | x |

199 | 207 | haploid | 06070039_0001 | x |

200 | 208 | haploid | 06070772_0001 | x |

201 | 209 | haploid | 07011408_0001 | x |

202 | 210 | haploid | 07011408_0002 | x |

203 | 211 | haploid | 06100319_0001 | x |

204 | 212 | haploid | 06070468_0001 | x |

205 | 213 | haploid | 06121385_0002 | x |

206 | 214 | haploid | 06100537_0001 | x |

207 | 215 | haploid | 06120726_0001 | x |

208 | 216 | haploid | 06070883_0001 | x |

209 | 217 | haploid | 06040041_0001 | x |

210 | 218 | haploid | 06100263_0001 | x |

211 | 219 | haploid | 06040043_0009 | x |

212 | 220 | haploid | 06101232_0001 | x |

213 | 221 | haploid | 06060189_0003 | x |

214 | 222 | haploid | 06091275_0002 | x |

215 | 223 | haploid | 06060097_0001 | x |

216 | 224 | haploid | 06100873_0001 | x |

217 | 225 | haploid | 06050038_0001 | x |

218 | 226 | haploid | 06100025_0001 | x |

219 | 227 | haploid | 06100940_0002 | x |

220 | 228 | haploid | 06040800_0001 | x |

221 | 229 | haploid | 06071007_0002 | x |

222 | 230 | haploid | 06020043_0026 | x |

223 | 231 | haploid | 06060811_0153 | x |

224 | 232 | haploid | 06080751_0001 | x |

225 | 233 | haploid | 06050178_0068 | x |

226 | 234 | haploid | 06040287_0001 | x |

227 | 236 | haploid | 06101496_0001 | x |

228 | 237 | haploid | 06040643_0001 | x |

229 | 238 | haploid | 06045788_0003 | x |

230 | 239 | haploid | 06050326_0001 | x |

231 | 240 | haploid | 06080649_0002 | x |

232 | 241 | haploid | 06080649_0003 | x |

233 | 242 | haploid | 06080601_0001 | x |

234 | 243 | haploid | 06101247_0001 | x |

235 | 244 | haploid | 06111271_0001 | x |

236 | 245 | haploid | 06090337_0001 | x |

237 | 246 | haploid | 06050125_0002 | x |

238 | 247 | haploid | 06050331_0001 | x |

239 | 248 | haploid | 06060728_0002 | x |

240 | 249 | haploid | 06080109_0001 | x |

241 | 250 | haploid | 06101048_0001 | x |

242 | 251 | haploid | 06051077_0001 | x |

243 | 253 | haploid | 06041067_0003 | x |

244 | 254 | haploid | 06040302_0002 | x |

245 | 255 | haploid | 06110121_0001 | x |

246 | 256 | haploid | 06090845_0001 | x |

247 | 257 | haploid | 06060375_0001 | x |

248 | 258 | haploid | 06070494_0001 | x |

249 | 259 | haploid | 06040938_0003 | x |

250 | 260 | haploid | 06081010_0001 | x |

251 | 261 | haploid | 06070415_0003 | x |

252 | 263 | haploid | 07010776_0001 | x |

253 | 264 | haploid | 06120890_0001 | x |

254 | 265 | haploid | 06120316_0001 | x |

255 | 266 | haploid | 06121413_0001 | x |

256 | 267 | haploid | 06090247_0001 | x |

257 | 268 | haploid | 06090247_0002 | x |

258 | 269 | haploid | 06090801_0001 | x |

259 | 270 | haploid | 06041160_0002 | x |

260 | 271 | haploid | 06031248_0001 | x |

261 | 272 | haploid | 07010075_0001 | x |

262 | 273 | haploid | 07011039_0001 | x |

263 | 274 | haploid | 06041232_0001 | x |

264 | 275 | haploid | 06101271_0002 | x |

265 | 276 | haploid | 06060506_0001 | x |

266 | 277 | haploid | 06080566_0001 | x |

267 | 278 | haploid | 06060124_0001 | x |

268 | 279 | haploid | 07020168_0001 | x |

269 | 281 | haploid | 06090909_0002 | x |

270 | 282 | haploid | 06080869_0001 | x |

271 | 1 | commercial pisifera | BL605/39-04 | 2x |

272 | 2 | commercial pisifera | BL607/91-10 | 2x |

273 | 3 | commercial pisifera | BL612/84-05 | 2x |

274 | 4 | commercial pisifera | BL1120/75-07 | 2x |

275 | 5 | commercial pisifera | BL143/04-10 | 2x |

276 | 6 | commercial pisifera | BL147/21-05 | 2x |

277 | 7 | commercial pisifera | BL148/05-08 | 2x |

278 | 8 | commercial pisifera | BL158/A2-13 | 2x |

279 | 1 | commercial tenera | BL10452/207-02 | 2x |

280 | 2 | commercial tenera | BL10323/104-06 | 2x |

281 | 3 | commercial tenera | BL1177/184-09 | 2x |

282 | 1 | commercial dura | BL10887/08-22 | 2x |

283 | 2 | commercial dura | BL10885/08-27 | 2x |

284 | 3 | commercial dura | BL1221/51-14 | 2x |

285 | 4 | commercial dura | BL1222/32-02 | 2x |

286 | 5 | commercial dura | BL1224/14-19 | 2x |

287 | 6 | commercial dura | BL1231/02-01 | 2x |

288 | 7 | commercial dura | BL1235/14-01 | 2x |

289 | 8 | commercial dura | BL1125/03-02 | 2x |

290 | 9 | commercial dura | BL1124/17-09 | 2x |

291 | 10 | commercial dura | BL1136/01-02 | 2x |

292 | 11 | commercial dura | BL10868/12-10 | 2x |

293 | 12 | commercial dura | BL10868/12-11 | 2x |

294 | 13 | commercial dura | BL10868/12-13 | 2x |

295 | 14 | commercial dura | BL10879/08-06 | 2x |

296 | 15 | commercial dura | BL10879/08-07 | 2x |

297 | 16 | commercial dura | BL10879/08-09 | 2x |

298 | 17 | commercial dura | BL10883/04-06 | 2x |

299 | 18 | commercial dura | BL10883/04-08 | 2x |

300 | 19 | commercial dura | BL10883/04-09 | 2x |

301 | 20 | commercial dura | BL10883/05-06 | 2x |

302 | 21 | commercial dura | BL10891/04-23 | 2x |

303 | 22 | commercial dura | BL10891/04-24 | 2x |

304 | 23 | commercial dura | BL10891/05-22 | 2x |

305 | 24 | commercial dura | BL10891/05-23 | 2x |

306 | 25 | commercial dura | BL10873/52-18 | 2x |

307 | 26 | commercial dura | BL10873/52-19 | 2x |

308 | 27 | commercial dura | BL10873/52-21 | 2x |

309 | 28 | commercial dura | BL10873/53-19 | 2x |

310 | 29 | commercial dura | BL1229/48-15 | 2x |

311 | 30 | commercial dura | BL1230/42-15 | 2x |

312 | 31 | commercial dura | A1122/04-01 | 2x |

313 | 32 | commercial dura | A1122/12-05 | 2x |

314 | 33 | commercial dura | A1122/12-08 | 2x |

315 | 34 | commercial dura | A1122/36-02 | 2x |

316 | 35 | commercial dura | A1123/01-02 | 2x |

317 | 36 | commercial dura | A1123/01-06 | 2x |

318 | 37 | commercial dura | A1123/01-07 | 2x |

319 | 38 | commercial dura | A1123/01-12 | 2x |

320 | 39 | commercial dura | A1130/02-02 | 2x |

321 | 40 | commercial dura | A1130/02-06 | 2x |

322 | 41 | commercial dura | A1130/02-10 | 2x |

323 | 42 | commercial dura | A1130/02-16 | 2x |

324 | 43 | commercial dura | A1127/08-16 | 2x |

325 | 44 | commercial dura | A1127/08-06 | 2x |

326 | 45 | commercial dura | A1127/05-11 | 2x |

327 | 46 | commercial dura | A1127/05-03 | 2x |

328 | 47 | commercial dura | B1134/35-09 | 2x |

329 | 48 | commercial dura | B1133/07-10 | 2x |

330 | 49 | commercial dura | B1136/21-11 | 2x |

331 | 50 | commercial dura | B1136/21-12 | 2x |

332 | 51 | commercial dura | C1128/07-14 | 2x |

333 | 52 | commercial dura | C1121/13-08 | 2x |

334 | 53 | commercial dura | BL11508/111-1 | 2x |

335 | 54 | commercial dura | BL11396/11-21 | 2x |

336 | 1 | Ghana wild | K31-1/GHANA/1-1 | 2x |

337 | 2 | Ghana wild | K31-1/GHANA/41-498 | 2x |

338 | 3 | Ghana wild | K31-1/GHANA/39-875 | 2x |

339 | 4 | Ghana wild | K31-1/GHANA/31-430 | 2x |

340 | 5 | Ghana wild | K31-1/GHANA/26-629 | 2x |

341 | 6 | Ghana wild | K31-1/GHANA/24-1164 | 2x |

342 | 7 | Ghana wild | K31-1/GHANA/56-1185 | 2x |

343 | 8 | Ghana wild | K31-1/GHANA/29-1087 | 2x |

344 | 9 | Ghana wild | K31-1/GHANA/38-1193 | 2x |

345 | 10 | Ghana wild | K31-1/GHANA/43-994 | 2x |

346 | 11 | Ghana wild | K31-1/GHANA/8-1100 | 2x |

347 | 12 | Ghana wild | K31-1/GHANA/11-1192 | 2x |

348 | 13 | Ghana wild | K31-1/GHANA/35-1190 | 2x |

349 | 14 | Ghana wild | K31-1/GHANA/3-46 | 2x |

350 | 15 | Ghana wild | K31-1/GHANA/5-102 | 2x |

351 | 16 | Ghana wild | K31-1/GHANA/7-121 | 2x |

352 | 17 | Ghana wild | K31-1/GHANA/12-239 | 2x |

353 | 18 | Ghana wild | K31-1/GHANA/14-350 | 2x |

354 | 19 | Ghana wild | K31-1/GHANA/18-368 | 2x |

355 | 20 | Ghana wild | K31-1/GHANA/19-245 | 2x |

356 | 21 | Ghana wild | K31-1/GHANA/21-1180 | 2x |

357 | 22 | Ghana wild | K31-1/GHANA/32-1141 | 2x |

358 | 23 | Ghana wild | K31-1/GHANA/37-1124 | 2x |

359 | 24 | Ghana wild | K31-1/GHANA/45-448 | 2x |

360 | 25 | Ghana wild | K31-1/GHANA/47-1175 | 2x |

361 | 26 | Ghana wild | K31-1/GHANA/50-1037 | 2x |

362 | 27 | Ghana wild | K31-1/GHANA/52-547 | 2x |

363 | 28 | Ghana wild | K31-1/GHANA/53-1167 | 2x |

364 | 29 | Ghana wild | K31-1/GHANA/54-1196 | 2x |

365 | 30 | Ghana wild | K31-1/GHANA/57-1153 | 2x |

Primer pairs used in the Principal Coordinates Analysis to compare the genetic diversity and affinities of Hs compared with a representative sample of commercial and wild diploid palms (listed in Table 6).

No | Primer | Forward (5'-3') | Reverse (5'-3') |
---|---|---|---|

1 |
| CACTGGGGTCATCTTCATCT | TCGTTCTCTTTCCTTTTGTC |

2 |
| GAACTTGGCGTGTAACT | TGGTAGGTCTATTTGAGAGT |

3 |
| GAAGGGGCATTGGATTT | CAGGTGACCAAGTGTAAT |

4 |
| TAGCCGCACTCCCACGAAGC | CCAGAATCATCAGACTCGGACAG |

5 |
| TCAAAGAGCCGCACAACAAG | ACTTTGCTGCTTGGTGACTTA |

6 |
| GGGGATGAGTTTGTTTGTTC | GGCAACATGAAGGTAAG |

7 |
| GTAACAGCATCCACACTAAC | GCAGGACAGGAGTAATGAGT |

8 |
| GACTACCGTATTGCGTTCAG | TTTATCAGGAGTTTTTGTTTGAGAG |

9 |
| AATCCAAGTGGCCTACAG | TCCCTACAATAGCCATCTC |

10 |
| CAAGGAGGAGCAGGTGAG | TACGGCCTCGGTTCTACAC |

11 |
| AGCCAATGAAGGATAAAGG | CCACTTAGAGGTAAAACAACAG |

12 |
| CAATTCCAGCGTFAFTATAG | AGTGGCAGTGGAAAAACAGT |

13 |
| GGTTCAATGGCATACAT | ACTCCCCTCTTTGACAT |

14 |
| TCAAGCCACATCCTAACTAC | CTCATAGCCTTTGTTGTGT |

15 |
| AGCAGGGCAAGAGCAATACT | TTCAGCAGCAGGAAACATC |

16 |
| GCCTATCCCCTGAACTATCT | TGCACATACCAGCAACAGAG |

17 |
| AGAGACCCTATTTGCTTGAT | GACAAAGAGCTTGTCACAC |

18 |
| GTCTCATGTGGCTACCTCTC | GCTAGGTGAAAAATAAAGTT |

19 |
| CCTCCTTTGGAATTATG | GTGTTTGATGGGACATACA |

20 |
| TTTGCTCGGCGGATACAT | GGAGGGCAGGAACAAAAAGT |

21 |
| GCAGCTAGTCACCTGAAC | GACGAGACTGGAAAGATG |

22 |
| CGTTCATCCCACCACCTTTC | GCTGCGAGGCCACTGATAC |

23 |
| GAATGTGGCTGTAAATGCTGAGTG | AAGCCGCATGGACAACTCTAGTAA |

24 |
| TTGATCTTAGACATAACATACTGTA | AAAGCGCGTAATCTCATAGT |

25 |
| TGCTTCTTGTCCTTGATACA | CCACGTCTACGAAATGATAA |

26 |
| GCTCTTTGTATTTCCTGGTTC | AGCAGCAAACCCTACTAACT |

27 |
| GCATCATTGGACTATCATACC | TTGTGAACCAGGGAACTATC |

28 |
| GAGATTACAAAGTCCAAACC | TCAAAATTAAGAAAGTATGC |

### Colchicine treatment

Roots of confirmed haploid seedlings were washed and immersed in 2.5, 5.0, 7.5, or 10 mM aqueous colchicine for 5 h. Seedlings were then rinsed with water and planted (2:1:1 v/v compost, sand and soil).

### Cross-fertilization using pollen from H plants

A developing male inflorescence of a confirmed H at the PMC stage was treated with 2.5 mM colchicine *via* injection into the spathe. This treatment was repeated at weekly intervals. The resultant pollen (0.03 g) was applied to a targeted section of the female inflorescence of a diploid dura palm. The inflorescence was then bagged to prevent inadvertent wind pollination.

In addition, some untreated H plants contained up to 30% fully stained pollen using Fluorescein diacetate (FDA) that was presumed to be viable. Pollen from these plants and from palms with apparently inviable pollen (unstained) was applied to targeted sections of a female inflorescence of diploid dura palms in the same way as above.

## Notes

## Declarations

### Acknowledgements

This work was funded by Sumatra Bioscience as part of their R&D programme in oil palm. The authors are grateful for the assistance of all staff of the Breeding Department and Seed Production Unit at Bah Lias Research Station, Indonesia.

## Authors’ Affiliations

## References

- Duvick DN: Biotechnology in the 1930s: the development of hybrid maize. Nature Rev Genet. 2001, 2: 69-73. 10.1038/35047587.PubMedView ArticleGoogle Scholar
- Horie T, Shiraiwa T, Homma K, Katsura K, Maeda S, Yoshida H: Can yields of lowland rice resume the increases that they showed in the 1980s?. Plant Prod Sci. 2005, 8: 259-274. 10.1626/pps.8.259.View ArticleGoogle Scholar
- Forster BP, Thomas WTB: Doubled haploids in genetics and plant breeding. Plant Breeding Rev. 2005, 25: 57-88.Google Scholar
- Cook RR: A haploid Marglobe tomato. J Hered. 1936, 27: 433-435.Google Scholar
- Maluszynski M, Kasha KJ, Szarejko I: Published protocols for other crop plant species. Doubled Haploid Production in Crop Plants: A Manual. Edited by: Maluszynski M, Kasha KJ, Forster BP, Szarejko I. Dordrecht:Kluwer; 2003:309-335.View ArticleGoogle Scholar
- Dunwell JM: Haploids in flowering plants: origins and exploitation. Plant Biotech J. 2010, 8: 377-424. 10.1111/j.1467-7652.2009.00498.x.View ArticleGoogle Scholar
- Kelly-Yong TL, Lee KT, Mohamed AR, Bhatia S: Potential of hydrogen from oil palm biomass as a source of renewable energy worldwide. Energ Policy. 2007, 35: 5692-5701. 10.1016/j.enpol.2007.06.017.View ArticleGoogle Scholar
- Basiron Y: Palm oil production through sustainable plantations. Eur J Lipid Sci Technol. 2007, 109: 289-295. 10.1002/ejlt.200600223.View ArticleGoogle Scholar
- Food and Agriculture Organization of the United Nations. Agricultural Production Statistics. [http://faostat.fao.org/]
- Stone R: Ecology - Can palm oil plantations come clean?. Science. 2007, 317: 1491-10.1126/science.317.5844.1491.PubMedView ArticleGoogle Scholar
- Wilcove DS, Koh LP: Addressing the threats to biodiversity from oil-palm agriculture. Biodivers Conserv. 2010, 19: 999-1007. 10.1007/s10531-009-9760-x.View ArticleGoogle Scholar
- Koh LP, Wilcove DS: Cashing in palm oil for conservation. Nature. 2007, 448: 993-994. 10.1038/448993a.PubMedView ArticleGoogle Scholar
- Clements R, Posa MRC: Conservationists could slip up in oil-palm enterprise. Nature. 2007, 449: 403-10.1038/449403d.PubMedView ArticleGoogle Scholar
- Venter O, Meijaard E, Wilson K: Strategies and alliances needed to protect forest from palm-oil industry. Nature. 2008, 451: 16-10.1038/451016a.PubMedView ArticleGoogle Scholar
- Corley RHV: Potential productivity of tropical perennial crops. Exp Agric. 1983, 19: 217-237. 10.1017/S0014479700022742.View ArticleGoogle Scholar
- Murphy DJ: Oil palm: future prospects for yield and quality improvements. Lipid Technology. 2009, 21: 257-260. 10.1002/lite.200900067.View ArticleGoogle Scholar
- Jones LH: Prospects for biotechnology in oil palm (
*Elaeis guineensis*) and coconut (*Cocos nucifera*) improvement. Biotech Genet Engin Rev. 1989, 7: 281-296.View ArticleGoogle Scholar - Whitehead RA, Chapman GP: Twinning and haploidy in
*Cocos nucifera*. Nature. 1962, 195: 1228-1229. 10.1038/1951228a0.View ArticleGoogle Scholar - Bouvier L, Zhang YX, Lespinasse Y: Two methods of haploidization in pear,
*Pyrus communis*L.: greenhouse seedling selection and*in situ*parthenogenesis induced by irradiated pollen. Theor Appl Genet. 1993, 87: 229-232. 10.1007/BF00223769.PubMedView ArticleGoogle Scholar - Germana MA: Haploids and doubled haploids in fruit trees. Advances in Haploid Production in Higher Plants. Edited by: Touraev A, Forster BP, Jain SM. The Netherlands: Springer-Verlag; 2009:241-263. full_text.View ArticleGoogle Scholar
- Lim W, Earle ED: Enhanced recovery of doubled haploid lines from parthenogenetic plants of melon. Plant Cell Tiss Org. 2009, 98: 351-356. 10.1007/s11240-009-9563-5.View ArticleGoogle Scholar
- Finkel E: With 'phenomics,' plant scientists hope to shift plant breeding into overdrive. Science. 2009, 325: 380-381. 10.1126/science.325_380.PubMedView ArticleGoogle Scholar
- Reijnders L, Huijbregts MAJ: Palm oil and the emission of carbon-based greenhouse gases. J Clean Product. 2008, 16: 477-482. 10.1016/j.jclepro.2006.07.054.View ArticleGoogle Scholar
- Parveez GKA: Biolistic mediated production of transgenic oil palm. Method Mol Biol. 2009, 477: 301-320. full_text.View ArticleGoogle Scholar
- Persson UM, Azar C: Preserving the world's tropical forests - a price on carbon may not do. Environ Sci Technol. 2010, 44: 210-215. 10.1021/es902629x.PubMedView ArticleGoogle Scholar
- Croxford AE, Rogers T, Caligari PDS, Wilkinson MJ: High-resolution melt analysis to identify and map sequence-tagged site anchor points onto linkage maps: a white lupin (
*Lupinus albus*) map as an exemplar. New Phytol. 2008, 180: 594-607. 10.1111/j.1469-8137.2008.02588.x.PubMedView ArticleGoogle Scholar - Billotte N, Marseillac N, Risterucci AM, Adon B, Brottier P, Baurens FC, Singh R, Herran A, Asmady H, Billot C, Amblard P, Durand-Gasselin T, Courtois B, Asmono D, Cheah SC, Rohde W, Ritter E, Charrier A: Microsatellite-based high density linkage map in oil palm (
*Elaeis guineensis*Jacq.). Theor Appl Genet. 2005, 110: 754-765. 10.1007/s00122-004-1901-8.PubMedView ArticleGoogle Scholar - Billotte N, Risterucci AM, Barcelos E, Noyer JL, Amblard P, Baurens FC: Development, characterisation, and across-taxa utility of oil palm (
*Elaeis guineensis*Jacq.) microsatellite markers. Genome. 2001, 44: 413-425. 10.1139/gen-44-3-413.PubMedView ArticleGoogle Scholar - Arumuganathan K, Earle ED: Estimation of nuclear DNA content of plants by flow cytometry. Plant Mol Biol Rep. 1991, 9: 221-231.View ArticleGoogle Scholar
- Peakall R, Smouse PE: GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes. 2006, 6: 288-295. 10.1111/j.1471-8286.2005.01155.x.View ArticleGoogle Scholar
- Orloci L: Multivariate analysis in vegetation research. Boston: The Hague, 2 1978.Google Scholar

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