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  1. Fruit ripening is a complicated development process affected by a variety of external and internal cues. It is well established that calcium treatment delays fruit ripening and senescence. However, the underly...

    Authors: Tianbao Yang, Hui Peng, Bruce D Whitaker and William S Conway
    Citation: BMC Plant Biology 2012 12:19
  2. Plants respond to external stimuli through fine regulation of gene expression partially ensured by small RNAs. Of these, microRNAs (miRNAs) play a crucial role. They negatively regulate gene expression by targ...

    Authors: Virginie Gébelin, Xavier Argout, Worrawat Engchuan, Bertrand Pitollat, Cuifang Duan, Pascal Montoro and Julie Leclercq
    Citation: BMC Plant Biology 2012 12:18
  3. With the completion of genome sequences belonging to some of the major crop plants, new challenges arise to utilize this data for crop improvement and increased food security. The field of genetical genomics h...

    Authors: Bjorn Kloosterman, AM Anithakumari, Pierre-Yves Chibon, Marian Oortwijn, Gerard C van der Linden, Richard GF Visser and Christian WB Bachem
    Citation: BMC Plant Biology 2012 12:17
  4. Genome-wide association studies (GWAS) based on linkage disequilibrium (LD) provide a promising tool for the detection and fine mapping of quantitative trait loci (QTL) underlying complex agronomic traits. In ...

    Authors: Raj K Pasam, Rajiv Sharma, Marcos Malosetti, Fred A van Eeuwijk, Grit Haseneyer, Benjamin Kilian and Andreas Graner
    Citation: BMC Plant Biology 2012 12:16
  5. Imbibed seeds integrate environmental and endogenous signals to break dormancy and initiate growth under optimal conditions. Seed maturation plays an important role in determining the survival of germinating s...

    Authors: Rex S Chiu, Hardeep Nahal, Nicholas J Provart and Sonia Gazzarrini
    Citation: BMC Plant Biology 2012 12:15
  6. Next generation sequencing (NGS) technologies are providing new ways to accelerate fine-mapping and gene isolation in many species. To date, the majority of these efforts have focused on diploid organisms with...

    Authors: Martin Trick, Nikolai Maria Adamski, Sarah G Mugford, Cong-Cong Jiang, Melanie Febrer and Cristobal Uauy
    Citation: BMC Plant Biology 2012 12:14
  7. Pine wilt disease is caused by the pine wood nematode, Bursaphelenchus xylophilus, which threatens pine forests and forest ecosystems worldwide and causes serious economic losses. In the 40 years since the pathog...

    Authors: Tomonori Hirao, Eitaro Fukatsu and Atsushi Watanabe
    Citation: BMC Plant Biology 2012 12:13
  8. The polyphenolic products of the phenylpropanoid pathway, including proanthocyanidins, anthocyanins and flavonols, possess antioxidant properties that may provide health benefits. To investigate the genetic ar...

    Authors: David Chagné, Célia Krieger, Maysoon Rassam, Mike Sullivan, Jenny Fraser, Christelle André, Massimo Pindo, Michela Troggio, Susan E Gardiner, Rebecca A Henry, Andrew C Allan, Tony K McGhie and William A Laing
    Citation: BMC Plant Biology 2012 12:12
  9. Mechanosensing and its downstream responses are speculated to involve sensory complexes containing Ca2+-permeable mechanosensitive channels. On recognizing osmotic signals, plant cells initiate activation of a wi...

    Authors: Takamitsu Kurusu, Daisuke Nishikawa, Yukari Yamazaki, Mariko Gotoh, Masataka Nakano, Haruyasu Hamada, Takuya Yamanaka, Kazuko Iida, Yuko Nakagawa, Hikaru Saji, Kazuo Shinozaki, Hidetoshi Iida and Kazuyuki Kuchitsu
    Citation: BMC Plant Biology 2012 12:11
  10. Cultivated peanut (Arachis hypogaea L.) is an important crop worldwide, valued for its edible oil and digestible protein. It has a very narrow genetic base that may well derive from a relatively recent single pol...

    Authors: Hui Wang, R Varma Penmetsa, Mei Yuan, Limin Gong, Yongli Zhao, Baozhu Guo, Andrew D Farmer, Benjamin D Rosen, Jinliang Gao, Sachiko Isobe, David J Bertioli, Rajeev K Varshney, Douglas R Cook and Guohao He
    Citation: BMC Plant Biology 2012 12:10
  11. Identification of genes underlying drought tolerance (DT) quantitative trait loci (QTLs) will facilitate understanding of molecular mechanisms of drought tolerance, and also will accelerate genetic improvement...

    Authors: Deepmala Sehgal, Vengaldas Rajaram, Ian Peter Armstead, Vincent Vadez, Yash Pal Yadav, Charles Thomas Hash and Rattan Singh Yadav
    Citation: BMC Plant Biology 2012 12:9
  12. We have studied the impact of carbohydrate-starvation on the acclimation response to high light using Arabidopsis thaliana double mutants strongly impaired in the day- and night path of photoassimilate export fro...

    Authors: Jessica Schmitz, Mark Aurel Schöttler, Stephan Krueger, Stefan Geimer, Anja Schneider, Tatjana Kleine, Dario Leister, Kirsten Bell, Ulf-Ingo Flügge and Rainer E Häusler
    Citation: BMC Plant Biology 2012 12:8
  13. Auxin is an important phytohormone for fleshy fruit development, having been shown to be involved in the initial signal for fertilisation, fruit size through the control of cell division and cell expansion, an...

    Authors: Fanny Devoghalaere, Thomas Doucen, Baptiste Guitton, Jeannette Keeling, Wendy Payne, Toby John Ling, John James Ross, Ian Charles Hallett, Kularajathevan Gunaseelan, GA Dayatilake, Robert Diak, Ken C Breen, D Stuart Tustin, Evelyne Costes, David Chagné, Robert James Schaffer…
    Citation: BMC Plant Biology 2012 12:7
  14. Plants exhibit phenotypic plasticity and respond to differences in environmental conditions by acclimation. We have systematically compared leaves of Arabidopsis thaliana plants grown in the field and under contr...

    Authors: Yogesh Mishra, Hanna Johansson Jänkänpää, Anett Z Kiss, Christiane Funk, Wolfgang P Schröder and Stefan Jansson
    Citation: BMC Plant Biology 2012 12:6
  15. Aquatic plants differ in their development from terrestrial plants in their morphology and physiology, but little is known about the molecular basis of the major phases of their life cycle. Interestingly, in p...

    Authors: Wenqin Wang and Joachim Messing
    Citation: BMC Plant Biology 2012 12:5
  16. The Arabidopsis thaliana dgat1 mutant, AS11, has an oil content which is decreased by 30%, and a strongly increased ratio of 18:3/20:1, compared to wild type. Despite lacking a functional DGAT1, AS11 still manage...

    Authors: Jingyu Xu, Anders S Carlsson, Tammy Francis, Meng Zhang, Travis Hoffman, Michael E Giblin and David C Taylor
    Citation: BMC Plant Biology 2012 12:4
  17. Previous studies on the reproductive biology of ferns showed that mating strategies vary among species, and that polyploid species often show higher capacity for self-fertilization than diploid species. Howeve...

    Authors: G Arjen de Groot, Betty Verduyn, ER Jasper Wubs, Roy HJ Erkens and Heinjo J During
    Citation: BMC Plant Biology 2012 12:3
  18. Recent reports suggest that vitamin B1 (thiamine) participates in the processes underlying plant adaptations to certain types of abiotic and biotic stress, mainly oxidative stress. Most of the genes coding for en...

    Authors: Maria Rapala-Kozik, Natalia Wolak, Marta Kujda and Agnieszka K Banas
    Citation: BMC Plant Biology 2012 12:2
  19. The oil palm (Elaeis guineensis Jacq.) is a perennial monocotyledonous tropical crop species that is now the world's number one source of edible vegetable oil, and the richest dietary source of provitamin A. Whil...

    Authors: Timothy John Tranbarger, Wanwisa Kluabmongkol, Duangjai Sangsrakru, Fabienne Morcillo, W James Tregear, Somvong Tragoonrung and Norbert Billotte
    Citation: BMC Plant Biology 2012 12:1
  20. Eukaryotic cilia are complex, highly conserved microtubule-based organelles with a broad phylogenetic distribution. Cilia were present in the last eukaryotic common ancestor and many proteins involved in cilia...

    Authors: Matthew E Hodges, Bill Wickstead, Keith Gull and Jane A Langdale
    Citation: BMC Plant Biology 2011 11:185
  21. Narciclasine (NCS) is an Amaryllidaceae alkaloid isolated from Narcissus tazetta bulbs. NCS has inhibitory effects on a broad range of biological activities and thus has various potential practical applications. ...

    Authors: Xiaofan Na, Yanfeng Hu, Kun Yue, Hongxia Lu, Pengfei Jia, Huahua Wang, Xiaomin Wang and Yurong Bi
    Citation: BMC Plant Biology 2011 11:184
  22. Association studies are of great interest to identify genes explaining trait variation since they deal with more than just a few alleles like classical QTL analyses. They are usually performed using collection...

    Authors: Jérôme Auzanneau, Christian Huyghe, Abraham J Escobar-Gutiérrez, Bernadette Julier, François Gastal and Philippe Barre
    Citation: BMC Plant Biology 2011 11:183
  23. With the advent of high throughput genomic tools, it is now possible to undertake detailed molecular studies of individual species outside traditional model organisms. Combined with a good understanding of phy...

    Authors: Annette C Richardson, Helen L Boldingh, Peter A McAtee, Kularajathevan Gunaseelan, Zhiwei Luo, Ross G Atkinson, Karine M David, Jeremy N Burdon and Robert J Schaffer
    Citation: BMC Plant Biology 2011 11:182
  24. In the violaxanthin (V) cycle, V is de-epoxidized to zeaxanthin (Z) when strong light or light combined with other stressors lead to an overexcitation of photosystems. However, plants can also suffer stress in...

    Authors: Beatriz Fernández-Marín, Fátima Míguez, José María Becerril and José Ignacio García-Plazaola
    Citation: BMC Plant Biology 2011 11:181
  25. Sesame (Sesamum indicum) is one of the most important oilseed crops with high oil contents and rich nutrient value. However, genetic improvement efforts in sesame could not get benefit from molecular biology tech...

    Authors: Tao Ke, Caihua Dong, Han Mao, Yingzhong Zhao, Hong Chen, Hongyan Liu, Xuyan Dong, Chaobo Tong and Shengyi Liu
    Citation: BMC Plant Biology 2011 11:180
  26. Plant color variation is due not only to the global pigment concentration but also to the proportion of different types of pigment. Variation in the color spectrum may arise from secondary modifications, such ...

    Authors: Alexandre Fournier-Level, Philippe Hugueney, Clotilde Verriès, Patrice This and Agnès Ageorges
    Citation: BMC Plant Biology 2011 11:179
  27. Accumulated evidence suggest that specific patterns of histone posttranslational modifications (PTMs) and their crosstalks may determine transcriptional outcomes. However, the regulatory mechanisms of these "h...

    Authors: Tao Wu, Er-Xu Pi, Sau-Na Tsai, Hon-Ming Lam, Sai-Ming Sun, Yiu Wa Kwan and Sai-Ming Ngai
    Citation: BMC Plant Biology 2011 11:178
  28. Single-repeat R3 MYB transcription factors (single-repeat MYBs) play important roles in controlling trichome patterning in Arabidopsis. It was proposed that single-repeat MYBs negatively regulate trichome formati...

    Authors: Lijun Gan, Kai Xia, Jin-Gui Chen and Shucai Wang
    Citation: BMC Plant Biology 2011 11:176
  29. Plant roots are important organs to uptake soil water and nutrients, perceiving and transducing of soil water deficit signals to shoot. The current knowledge of drought stress transcriptomes in rice are mostly...

    Authors: Ali Moumeni, Kouji Satoh, Hiroaki Kondoh, Takayuki Asano, Aeni Hosaka, Ramiah Venuprasad, Rachid Serraj, Arvind Kumar, Hei Leung and Shoshi Kikuchi
    Citation: BMC Plant Biology 2011 11:174
  30. NAC domain transcription factors initiate secondary cell wall biosynthesis in Arabidopsis fibres and vessels by activating numerous transcriptional regulators and biosynthetic genes. NAC family member SND2 is an ...

    Authors: Steven G Hussey, Eshchar Mizrachi, Antanas V Spokevicius, Gerd Bossinger, Dave K Berger and Alexander A Myburg
    Citation: BMC Plant Biology 2011 11:173
  31. Rice is a major source of dietary intake of cadmium (Cd) for populations that consume rice as a staple food. Understanding how Cd is transported into grains through the whole plant body is necessary for reduci...

    Authors: Satoru Ishikawa, Nobuo Suzui, Sayuri Ito-Tanabata, Satomi Ishii, Masato Igura, Tadashi Abe, Masato Kuramata, Naoki Kawachi and Shu Fujimaki
    Citation: BMC Plant Biology 2011 11:172
  32. Common bean is an important legume crop with only a moderate number of short expressed sequence tags (ESTs) made with traditional methods. The goal of this research was to use full-length cDNA technology to de...

    Authors: Matthew W Blair, Andrea C Fernandez, Manabu Ishitani, Danilo Moreta, Motoaki Seki, Sarah Ayling and Kazuo Shinozaki
    Citation: BMC Plant Biology 2011 11:171
  33. Plants involved in highly complex and well-coordinated systems have evolved a considerable degree of developmental plasticity, thus minimizing the damage caused by stress. MicroRNAs (miRNAs) have recently emer...

    Authors: Haiyan Li, Yuanyuan Dong, Hailong Yin, Nan Wang, Jing Yang, Xiuming Liu, Yanfang Wang, Jinyu Wu and Xiaokun Li
    Citation: BMC Plant Biology 2011 11:170
  34. Chloroplasts are the green plastids where photosynthesis takes place. The biogenesis of chloroplasts requires the coordinate expression of both nuclear and chloroplast genes and is regulated by developmental a...

    Authors: Xiangjun Zhou, Zhangjun Fei, Theodore W Thannhauser and Li Li
    Citation: BMC Plant Biology 2011 11:169
  35. Sucrose is the primary photosynthesis product and the principal translocating form within higher plants. Sucrose transporters (SUC/SUT) play a critical role in phloem loading and unloading. Photoassimilate transp...

    Authors: Fupeng Li, Chaozhi Ma, Xia Wang, Changbin Gao, Jianfeng Zhang, Yuanyuan Wang, Na Cong, Xinghua Li, Jing Wen, Bin Yi, Jinxiong Shen, Jinxing Tu and Tingdong Fu
    Citation: BMC Plant Biology 2011 11:168
  36. Avocado (Persea americana) belongs to the Lauraceae family and is an important commercial fruit crop in over 50 countries. The most serious pathogen affecting avocado production is Phytophthora cinnamomi which ca...

    Authors: Waheed Mahomed and Noëlani van den Berg
    Citation: BMC Plant Biology 2011 11:167
  37. Iron-sulfur [Fe-S] clusters are prosthetic groups required to sustain fundamental life processes including electron transfer, metabolic reactions, sensing, signaling, gene regulation and stabilization of prote...

    Authors: Marta D Heis, Elisabeth M Ditmer, Luisa A de Oliveira, Ana Paula G Frazzon, Rogério Margis and Jeverson Frazzon
    Citation: BMC Plant Biology 2011 11:166
  38. The composition of grapevine berry at harvest is a major determinant of wine quality. Optimal oenological maturity of berries is characterized by a high sugar/acidity ratio, high anthocyanin content in the ski...

    Authors: Sabine Guillaumie, Romain Fouquet, Christian Kappel, Céline Camps, Nancy Terrier, Dominique Moncomble, Jake D Dunlevy, Christopher Davies, Paul K Boss and Serge Delrot
    Citation: BMC Plant Biology 2011 11:165
  39. Understanding the adaptation of cereals to environmental conditions is one of the key areas in which plant science can contribute to tackling challenges presented by climate change. Temperature and day length ...

    Authors: M Cristina Casao, Ildiko Karsai, Ernesto Igartua, M Pilar Gracia, Otto Veisz and Ana M Casas
    Citation: BMC Plant Biology 2011 11:164
  40. The natural environment for plants is composed of a complex set of abiotic stresses and biotic stresses. Plant responses to these stresses are equally complex. Systems biology approaches facilitate a multi-tar...

    Authors: Grant R Cramer, Kaoru Urano, Serge Delrot, Mario Pezzotti and Kazuo Shinozaki
    Citation: BMC Plant Biology 2011 11:163
  41. We previously demonstrated that the Arabidopsis thaliana AtMYB60 protein is an R2R3MYB transcription factor required for stomatal opening. AtMYB60 is specifically expressed in guard cells and down-regulated at th...

    Authors: Eleonora Cominelli, Massimo Galbiati, Alessandra Albertini, Fabio Fornara, Lucio Conti, George Coupland and Chiara Tonelli
    Citation: BMC Plant Biology 2011 11:162
  42. Heavy-ion mutagenesis is recognised as a powerful technology to generate new mutants, especially in higher plants. Heavy-ion beams show high linear energy transfer (LET) and thus more effectively induce DNA do...

    Authors: Yusuke Kazama, Tomonari Hirano, Hiroyuki Saito, Yang Liu, Sumie Ohbu, Yoriko Hayashi and Tomoko Abe
    Citation: BMC Plant Biology 2011 11:161
  43. Rice Xa3/Xa26 disease-resistance gene encodes a leucine-rich repeat (LRR) receptor kinase-type protein against Xanthomonas oryzae pv. oryzae (Xoo) and belongs to a multigene family. However, the functions of most...

    Authors: Haitao Zhang, Yinglong Cao, Jing Zhao, Xianghua Li, Jinghua Xiao and Shiping Wang
    Citation: BMC Plant Biology 2011 11:160
  44. Citrus canker disease caused by the bacterial pathogen Xanthomonas citri subsp. citri (Xcc) has become endemic in areas where high temperature, rain, humidity, and windy conditions provide a favourable environmen...

    Authors: Abeer A Khalaf, Frederick G Gmitter Jr, Ana Conesa, Joaquin Dopazo and Gloria A Moore
    Citation: BMC Plant Biology 2011 11:159
  45. Although there has been considerable progress made towards understanding the molecular mechanisms of bud dormancy, the roles of protein phosphorylation in the process of dormancy regulation in woody plants rem...

    Authors: Chang-Cai Liu, Chang-Fu Liu, Hong-Xia Wang, Zhi-Ying Shen, Chuan-Ping Yang and Zhi-Gang Wei
    Citation: BMC Plant Biology 2011 11:158
  46. Manipulation of the amylose-amylopectin ratio in cereal starch has been identified as a major target for the production of starches with novel functional properties. In wheat, silencing of starch branching enz...

    Authors: Ermelinda Botticella, Francesco Sestili, Antonio Hernandez-Lopez, Andrew Phillips and Domenico Lafiandra
    Citation: BMC Plant Biology 2011 11:156
  47. Although modern soybean cultivars feature yellow seed coats, with the only color variation found at the hila, the ancestral condition is black seed coats. Both seed coat and hila coloration are due to the pres...

    Authors: Jason D Gillman, Ashley Tetlow, Jeong-Deong Lee, J Grover Shannon and Kristin Bilyeu
    Citation: BMC Plant Biology 2011 11:155

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