Vetter IR, Wittinghofer A: The guanine nucleotide-binding switch in three dimensions. Science. 2001, 294: 1299-1304. 10.1126/science.1062023.
Article
PubMed
CAS
Google Scholar
Weis K: Nucleocytoplasmic transport: cargo trafficking across the border. Curr Opin Cell Biol. 2002, 14: 328-335. 10.1016/S0955-0674(02)00337-X.
Article
PubMed
CAS
Google Scholar
Haizel T, Merkle T, Pay A, Fejes E, Nagy F: Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. Plant J. 1997, 11: 93-103. 10.1046/j.1365-313X.1997.11010093.x.
Article
PubMed
CAS
Google Scholar
Pay A, Resch K, Frohnmeyer H, Fejes E, Nagy F, Nick P: Plant RanGAPs are localized at the nuclear envelope in interphase and associated with microtubules in mitotic cells. Plant J. 2002, 30: 699-709. 10.1046/j.1365-313X.2002.01324.x.
Article
PubMed
CAS
Google Scholar
Kim SH, Roux SJ: An Arabidopsis Ran-binding protein, AtRanBP1c, is a co-activator of Ran GTPase-activating protein and requires the C-terminus for its cytoplasmic localization. Planta. 2003, 216: 1047-1052.
PubMed
CAS
Google Scholar
Baloğlu MC, Zakharov FN, Öktem HA, Yücel AM: Molecular cloning, characterization, and expression analysis of a gene encoding a Ran binding protein (RanBP) in Cucumis melo L. Turk J Biol. 2011, 35: 387-397.
Google Scholar
Cho HK, Park JA, Pai HS: Physiological function of NbRanBP1 in Nicotiana benthamiana. Mol Cells. 2008, 26: 270-277.
PubMed
CAS
Google Scholar
Wang D, Li Z, Schoen SR, Messing EM, Wu G: A novel MET-interacting protein shares high sequence similarity with RanBPM, but fails to stimulate MET-induced Ras/Erk signaling. Biochem Biophys Res Commun. 2004, 313: 320-326. 10.1016/j.bbrc.2003.11.124.
Article
PubMed
CAS
Google Scholar
Dansereau D, Lasko P: RanBPM regulates cell shape, arrangement, and capacity of the female germline stem cell niche in Drosophila melanogaster. J Cell Biol. 2008, 182: 963-977. 10.1083/jcb.200711046.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hosono K, Noda S, Shimizu A, Nakanishi N, Ohtsubo M, Shimizu N, Minoshima S: YPEL5 protein of the YPEL gene family is involved in the cell cycle progression by interacting with two distinct proteins RanBPM and RanBP10. Genomics. 2010, 96: 102-111. 10.1016/j.ygeno.2010.05.003.
Article
PubMed
CAS
Google Scholar
Suresh B, Ramakrishna S, Baek KH: Diverse roles of the scaffolding protein RanBPM. Drug Discov Today. 2012, 17: 379-387. 10.1016/j.drudis.2011.10.030.
Article
PubMed
CAS
Google Scholar
Umeda M, Nishitani H, Nishimoto T: A novel nuclear protein, Twa1, and Muskelin comprise a complex with RanBPM. Gene. 2003, 303: 47-54.
Article
PubMed
CAS
Google Scholar
Ideguchi H, Ueda A, Tanaka M, Yang J, Tsuji T, Ohno S, Hagiwara E, Aoki A, Ishigatsubo Y: Structural and functional characterization of the USP11 deubiquitinating enzyme, which interacts with the RanGTP-associated protein RanBPM. J Biochem. 2002, 367: 87-95. 10.1042/BJ20011851.
Article
CAS
Google Scholar
Nishitani H, Hirose E, Uchimura Y, Nakamura M, Umeda M, Nishii K, Mori N, Nishimoto T: Full-sized RanBPM cDNA encodes a protein possessing a long stretch of proline and glutamine within the N-terminal region, comprising a large protein complex. Gene. 2001, 272: 25-33. 10.1016/S0378-1119(01)00553-4.
Article
PubMed
CAS
Google Scholar
Kobayashi N, Yang J, Ueda A, Suzuki T, Tomaru K, Takeno M, Okuda K, Ishigatsubo Y: RanBPM, Muskelin, p48EMLP, p44CTLH, and the armadillo-repeat proteins ARMC8α and ARMC8β are components of the CTLH complex. Gene. 2007, 396: 236-247. 10.1016/j.gene.2007.02.032.
Article
PubMed
CAS
Google Scholar
Regelmann J, Schutz T, Josupeit FS, Horak J, Rose M, Entian K, Thumm M, Wolf DH: Catabolite Degradation of Fructose-1, 6-bisphosphatase in the Yeast Saccharomyces cerevisiae: A Genome-wide Screen Identifies Eight Novel GID Genes and Indicates the Existence of Two Degradation Pathways. Mol Biol Cell. 2003, 14: 1652-1663. 10.1091/mbc.E02-08-0456.
Article
PubMed
CAS
PubMed Central
Google Scholar
Tomaru K, Ueda A, Suzuki T, Kobayashi N, Yang J, Yamamoto M, Takeno M, Kaneko T, Ishigatsubo Y: Armadillo Repeat Containing 8alpha Binds to HRS and Promotes HRS Interaction with Ubiquitinated Proteins. Open Biochem J. 2010, 4: 1-8. 10.2174/1874091X01004010001.
Article
PubMed
CAS
PubMed Central
Google Scholar
Aquea F, Matte JP, Gutiérrez F, Rico S, Lamprecht M, Sánchez C, Arce-Johnson P: Molecular characterization of a Trithorax-group homologue gene from Pinus radiata. Plant Cell Rep. 2009, 28: 1531-1538. 10.1007/s00299-009-0752-9.
Article
PubMed
CAS
Google Scholar
Gao X, Chen Z, Zhang J, Li X, Chen G, Li X, Wu C: OsLIS-L1 encoding a lissencephaly type-1-like protein with WD40 repeats is required for plant height and male gametophyte formation in rice. Planta. 2012, 354: 713-727.
Article
Google Scholar
Proost S, Van Bel M, Sterck L, Billiau K, Van Parys T, Van de Peer Y, Vandepoele K: PLAZA: a comparative genomics resource to study gene and genome evolution in plants. Plant Cell. 2009, 21: 3718-3731. 10.1105/tpc.109.071506.
Article
PubMed
CAS
PubMed Central
Google Scholar
Swarbreck D, Wilks C, Lamesch P, Berardini TZ, Garcia-Hernandez M, Foerster H, Li D, Meyer T, Muller R, Ploetz L, Radenbaugh A, Singh S, Swing V, Tissier C, Zhang P, Huala E: The Arabidopsis Information Resource (TAIR): gene structure and function annotation. Nucleic Acids Res. 2008, 36: D1009-14.
Article
PubMed
CAS
PubMed Central
Google Scholar
Lopez R: WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Res. 2003, 31: 3795-3798. 10.1093/nar/gkg573.
Article
PubMed
CAS
PubMed Central
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S: MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol Biol Evol. 2011, 28: 2731-2739. 10.1093/molbev/msr121.
Article
PubMed
CAS
PubMed Central
Google Scholar
Ponting C, Schultz J, Bork P: SPRY domains in ryanodine receptors (Ca2 + -release channels). Trends Biochem Sci. 1997, 5: 2-3.
Google Scholar
Rhodes D, de Bono B, Trowsdale J: Relationship between SPRY and B30.2 protein domains. Evolution of a component of immune defence?. Immunology. 2005, 116: 411-417.
PubMed
CAS
PubMed Central
Google Scholar
Emes RD, Ponting CP: A new sequence motif linking lissencephaly, Treacher Collins and oral-facial-digital type 1 syndromes, microtubule dynamics and cell migration. Hum Mol Genet. 2001, 10: 2813-2820. 10.1093/hmg/10.24.2813.
Article
PubMed
CAS
Google Scholar
Menon RP, Gibson TJ, Pastore A: The C Terminus of Fragile X Mental Retardation Protein Interacts with the Multi-domain Ran-binding Protein in the Microtubule-organising Centre. J Mol Biol. 2004, 43-53.
Google Scholar
Puntervoll P: ELM server: a new resource for investigating short functional sites in modular eukaryotic proteins. Nucleic Acids Res. 2003, 31: 3625-3630. 10.1093/nar/gkg545.
Article
PubMed
CAS
PubMed Central
Google Scholar
Ren J, Gao X, Jin C, Zhu M, Wang X, Shaw A, Wen L, Yao X, Xue Y: Systematic study of protein sumoylation: Development of a site-specific predictor of SUMOsp 2.0. Proteomics. 2009, 9: 3409-3412. 10.1002/pmic.200800646.
Article
CAS
Google Scholar
Mathur J, Csaba K: Establishment and Maintenance of Cell SuspensionCultures. In Methods in Molecular Biology. Volume 82. Arabidopsis protocols.Edited by Martinéz-Zapater J, Salinas J. Totowa: Humana Press;1997:27–30.
Google Scholar
Clough SJ, Bent F: Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998, 16: 735-743. 10.1046/j.1365-313x.1998.00343.x.
Article
PubMed
CAS
Google Scholar
Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ: An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets. PLoS One. 2007, 2: e718-10.1371/journal.pone.0000718.
Article
PubMed
PubMed Central
Google Scholar
Hruz T, Laule O, Szabo G, Wessendorp F, Bleuler S, Oertle L, Widmayer P, Gruissem W, Zimmermann P: Genevestigator v3: a reference expression database for the meta-analysis of transcriptomes. Advances in bioinformatics. 2008, 2008: 420747.
Article
PubMed
PubMed Central
Google Scholar
Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW: CORUM: the comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res. 2010, 38: D497-501. 10.1093/nar/gkp914.
Article
PubMed
CAS
PubMed Central
Google Scholar
Suzuki T, Ueda A, Kobayashi N, Yang J, Tomaru K, Yamamoto M, Takeno M, Ishigatsubo Y: Proteasome-dependent degradation of alpha-catenin is regulated by interaction with ARMc8alpha. J Biochem. 2008, 411: 581-591. 10.1042/BJ20071312.
Article
CAS
Google Scholar
Lee I: Ambaru Bi, Thakkar P, Marcotte EM, Rhee SY: Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nature Biotechnol. 2010, 28: 149-156. 10.1038/nbt.1603.
Article
CAS
Google Scholar
Nakamura M, Masuda H, Horii J, Kuma KI, Yokoyama N, Ohba T, Nishitani H, Miyata T, Tanaka M, Nishimoto T: When overexpressed, a novel centrosomal protein, RanBPM, causes ectopic microtubule nucleation similar to gamma-tubulin. J Cell Biol. 1998, 143: 1041-1052. 10.1083/jcb.143.4.1041.
Article
PubMed
CAS
PubMed Central
Google Scholar
Dryková D, Cenklová V, Sulimenko V, Volc J, Dráber P, Binarová P: Plant gamma-Tubulin Interacts with alpha-Tubulin Dimers and Forms Membrane-Associated Complexes. Plant Cell. 2003, 15: 465-480. 10.1105/tpc.007005.
Article
PubMed
PubMed Central
Google Scholar
Heald R, Weis K: Spindles get the Ran around. Cell. 2000, 8924: 1-4.
Google Scholar
Murrin LC, Talbot JN: RanBPM, a scaffolding protein in the immune and nervous systems. J Neuroimmune Pharm. 2007, 2: 290-295. 10.1007/s11481-007-9079-x.
Article
Google Scholar
Zou Y, Lim S, Lee K, Deng X, Friedman E, Chem JB: Serine/Threonine Kinase Mirk/Dyrk1B Is an Inhibitor of Epithelial Cell Migration and Is Negatively Regulated by the Met Adaptor Ran-binding Protein M. J Biol Chem. 2003, 278: 49573-49581. 10.1074/jbc.M307556200.
Article
PubMed
CAS
Google Scholar
Denti S, Sirri A, Cheli A, Rogge L, Innamorati G, Putignano S, Fabbri M, Pardi R, Bianchi E: RanBPM Is a Phosphoprotein That Associates with the Plasma Membrane and Interacts with the Integrin LFA-1. J Biol Chem. 2004, 279: 13027-13034.
Article
PubMed
CAS
Google Scholar
Poirier MB, Laflamme L, Langlois MF: Identification and characterization of RanBPM, a novel coactivator of thyroid hormone receptors. J Mol Endocrinol. 2006, 36: 313-325. 10.1677/jme.1.01891.
Article
PubMed
CAS
Google Scholar
Talbot JN, Skifter DA, Bianchi E, Monaghan DT, Toews ML, Murrin LC, Myron LT: Neuroscience Letters Regulation of mu opioid receptor internalization by the scaffold protein RanBPM. Neurosci Lett. 2009, 466: 154-158. 10.1016/j.neulet.2009.09.048.
Article
PubMed
CAS
PubMed Central
Google Scholar
Puverel S, Barrick C, Dolci S, Coppola V, Tessarollo L: RanBPM is essential for mouse spermatogenesis and oogenesis. Development. 2011, 138: 2511-2521. 10.1242/dev.062505.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cheng L, Lemmon S, Lemmon V: RanBPM is an L1-interacting protein that regulates L1-mediated mitogen-activated protein kinase activation. J Neurochem. 2005, 94: 1102-1110. 10.1111/j.1471-4159.2005.03254.x.
Article
PubMed
CAS
PubMed Central
Google Scholar
Atabakhsh E, Bryce DM, Lefebvre KJ, Schild-Poulter C: RanBPM has proapoptotic activities that regulate cell death pathways in response to DNA damage. Mol Cancer Res. 2009, 7: 1962-1972. 10.1158/1541-7786.MCR-09-0098.
Article
PubMed
CAS
Google Scholar
Santt O, Pfirrmann T, Braun B, Juretschke J, Kimmig P, Scheel H, Hofmann K, Thumm M, Wolf DH: The Yeast GID Complex, a Novel Ubiquitin Ligase (E3) Involved in the Regulation of Carbohydrate Metabolism. Mol Biol Cell. 2008, 19: 3323-3333. 10.1091/mbc.E08-03-0328.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zhu Y, Wang Y, Xia C, Li D, Li Y, Zeng W, Yuan W, Liu H, Zhu C, Wu X, Liu M: WDR26: a novel Gbeta-like protein, suppresses MAPK signaling pathway. J Cell Biochem. 2004, 93: 579-87. 10.1002/jcb.20175.
Article
PubMed
CAS
Google Scholar
Kobielak A, Pasolli HA, Fuchs E: Mammalian formin-1 participates in adherens junctions and polymerization of linear actin cables. Nature Cell Biol. 2004, 6: 21-30. 10.1038/ncb1075.
Article
PubMed
CAS
PubMed Central
Google Scholar
Obayashi T, Nishida K, Kasahara K, Kinoshita K: ATTED-II updates: condition-specific gene coexpression to extend coexpression analyses and applications to a broad range of flowering plants. Plant Cell Physiol. 2011, 52: 213-219. 10.1093/pcp/pcq203.
Article
PubMed
CAS
PubMed Central
Google Scholar
Harrison SJ, Mott EK, Parsley K, Aspinall S, Gray JC, Cottage A: A rapid and robust method of identifying transformed Arabidopsis thaliana seedlings following floral dip transformation. Plant Methods. 2006, 2: 19-25. 10.1186/1746-4811-2-19.
Article
PubMed
PubMed Central
Google Scholar
Karimi M, Inzé D, Depicker A: GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci. 2002, 7: 193-195. 10.1016/S1360-1385(02)02251-3.
Article
PubMed
CAS
Google Scholar
Halada P, Man P, Grebenova D, Hrkal Z, Havlicek V: Identification of HL60 proteins affected by 5-aminolevulinic acid-based photodynamic therapy using mass spectrometric approach. Collect Czech Chem Commun. 2001, 66: 1720-1728. 10.1135/cccc20011720.
Article
CAS
Google Scholar
Laemmli UK: Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970, 227: 680-685. 10.1038/227680a0.
Article
PubMed
CAS
Google Scholar
Binarová P, Cenklová V, Procházková J, Doskočilová A, Volc J, Vrlík M, Bogre L: gamma-Tubulin Is Essential for Acentrosomal Microtubule Nucleation and Coordination of Late Mitotic Events in Arabidopsis. Plant Cell. 2006, 18: 1199-1212. 10.1105/tpc.105.038364.
Article
PubMed
PubMed Central
Google Scholar
Letunic I, Doerks T, Bork P: SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res. 2011, 1-4.
Google Scholar
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A: The Pfam protein families database. Nucleic Acids Res. 2008, 36: D281-8. 10.1093/nar/gkn226.
Article
PubMed
CAS
PubMed Central
Google Scholar
Larkin M, Blackshields G, Brown NP, Chenna R, McGettigan P, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG: Clustal W and Clustal X version 2.0. Bioinformatics. 2007, 23: 2947-2958. 10.1093/bioinformatics/btm404.
Article
PubMed
CAS
Google Scholar
Xao X, Xue Y: DOG 1.0: illustrator of protein domain structures. Cell Res. 2009, 19: 271-273. 10.1038/cr.2009.6.
Article
Google Scholar