Gibberellin mediates daylength-controlled differentiation of vegetative meristems in strawberry (Fragaria × ananassaDuch)
© Hytönen et al; licensee BioMed Central Ltd. 2009
Received: 29 August 2008
Accepted: 11 February 2009
Published: 11 February 2009
Differentiation of long and short shoots is an important developmental trait in several species of the Rosaceae family. However, the physiological mechanisms controlling this differentiation are largely unknown. We have studied the role of gibberellin (GA) in regulation of shoot differentiation in strawberry (Fragaria × ananassa Duch.) cv. Korona. In strawberry, differentiation of axillary buds to runners (long shoot) or to crown branches (short shoot) is promoted by long-day and short-day conditions, respectively. Formation of crown branches is a prerequisite for satisfactory flowering because inflorescences are formed from the apical meristems of the crown.
We found that both prohexadione-calcium and short photoperiod inhibited runner initiation and consequently led to induction of crown branching. In both cases, this correlated with a similar decline in GA1 level. Exogenous GA3 completely reversed the effect of prohexadione-calcium in a long photoperiod, but was only marginally effective in short-day grown plants. However, transfer of GA3-treated plants from short days to long days restored the normal runner formation. This did not occur in plants that were not treated with GA3. We also studied GA signalling homeostasis and found that the expression levels of several GA biosynthetic, signalling and target genes were similarly affected by prohexadione-calcium and short photoperiod in runner tips and axillary buds, respectively.
GA is needed for runner initiation in strawberry, and the inhibition of GA biosynthesis leads to the formation of crown branches. Our findings of similar changes in GA levels and in GA signalling homeostasis after prohexadione-calcium and short-day treatments, and photoperiod-dependent responsiveness of the axillary buds to GA indicate that GA plays a role also in the photoperiod-regulated differentiation of axillary buds. We propose that tightly regulated GA activity may control induction of cell division in subapical tissues of axillary buds, being one of the signals determining bud fate.
Formation of long and short shoots (also called spurs) is a common developmental trait in several economically important species of the Rosaceae family, including apple (Malus × domestica Borkh.), pear (Pyrus communis L.), apricot (Prunus armeniaca L.) and sour and sweet cherry (Prunus ceracus L., Prunus avium L.). Long shoots have long internodes, whereas short shoots are lateral organs with very short internodes and leaf rosette-like appearance. In these species, diverse flowering habits can be found and even the cultivars can differ from each other in this respect. Typically, flowers are borne either on terminal (apple, pear) or lateral (cherry, apricot) buds of short shoots [1–3].
Both shoot types can be found in strawberry (Fragaria sp.; e.g. F. × ananassa Duch., F. vesca L.). Strawberry is a perennial rosette plant with short internodes in its crown. Strawberry axillary buds may form both short and long shoots; branch crowns and runners, respectively. Runners are composed of successive units of two long internodes, followed by a leaf rosette (daughter plant). When the terminal bud of the runner forms a daughter plant, the axillary bud in the second node of the runner produces the next sympodial unit. Inflorescences are formed terminally in the short shoots, while the uppermost axillary bud(s) continue vegetative growth of the crown [4, 5].
Junebearing strawberry cultivars are facultative short-day (SD) plants; short daylength is the primary factor for induction of flowering, but a strong interaction exists between photoperiod and temperature [6–8]. Daylength also controls vegetative differentiation of axillary buds in strawberry. In long-day (LD) conditions, runners are formed, and in SD crown branching occurs [4, 9, 10]. Crown branching is a prerequisite for satisfactory flowering, and consequently, for berry crop production because the inflorescences are formed from the apical meristems of the crown and axillary buds containing at least two leaf initials [10, 11].
In the late 1950s, Guttridge  proposed that a transmissible hormone produced in LD enhances petiole elongation and runnering and inhibits flowering in strawberry, the effects mimicked by gibberellin (GA) application [13–16]. Inhibitors of GA biosynthesis have the opposite effect on vegetative growth [17–20], but their effect on flowering time is unknown. Prohexadione-calcium (Pro-Ca), the inhibitor of GA 3-oxidase enzyme , has recently been shown to effectively inhibit runner formation and enhance crown branching in strawberry under field conditions , with a concomitant increase in berry yield .
In strawberry, the early 13-hydroxylation pathway appears to be a predominant GA biosynthesis pathway [24–26]. In this pathway, GA12 is 13-hydroxylated to GA53, which is further converted to other GAs in cytosol by three enzymes, encoded by small gene families . GA 20-oxidases are multifunctional enzymes responsible for conversion of GA53 to GA20 through GA44 and GA19. GA 3-oxidases produce bioactive GA1 from GA20, and GA 2-oxidases catalyse the inactivation steps GA20 to GA29 and GA1 to GA8, respectively. Many of the GA oxidase genes are subjected to tight developmental [28, 29] and/or light (light quality, photoperiod) regulation [30–32].
GA receptors have recently been cloned, one from rice and three, GID1a, GID1b and GID1c, from Arabidopsis [33, 34]. Binding of GA to GID1 leads to a physical interaction between GID1 and DELLA transcriptional repressors , the central components of the GA signalling pathway that suppress GA-mediated growth responses . SLY1 F-box protein, a component of E3 ubiquitin ligase SCF complex (SKP/Cullin/F-box), recruits the receptor-bound DELLA proteins and targets them to degradation in 26S proteasome, leading to the release of plant growth from DELLA-mediated restraint .
The GA pathway is tightly regulated by GA itself at multiple levels, a phenomenon called GA signalling homeostasis . Some of the GA biosynthetic (GA20ox and GA3ox) genes and positive regulators of GA signalling (GID1, SLY1) are feedback-regulated, and catabolic genes (GA2ox) and negative signalling components (DELLA genes) are feed-forward regulated by GA. In addition, a reduced level of one DELLA protein can be compensated by accumulation of another DELLA .
Despite the importance of short and long shoot differentiation in many cultivated species of the Rosaceae family, the physiological and genetic mechanisms of this differentiation remain largely unknown. In this paper, we studied the role of GA in regulating short/long shoot differentiation in strawberry, which is one of the best-developed model species for Rosaceae . We report the effects of daylength and GA biosynthesis inhibitor Pro-Ca on axillary bud differentiation, GA levels and GA signalling homeostasis. The results indicate that GA is one of the key signals affecting axillary bud differentiation.
Photoperiod, prohexadione-calcium and GA3affect the differentiation of strawberry axillary buds
Effect of photoperiod (h) on strawberry vegetative growth.
11.6 ± 0.5bz
8.6 ± 0.4a
37.7 ± 3.8b
2.9 ± 0.3b
1.7 ± 0.4
13.6 ± 0.5ab
12.3 ± 0.2b
39.7 ± 2.6b
2.9 ± 0.3b
2.0 ± 0.8
14.7 ± 0.6a
15.4 ± 0.8c
120.4 ± 3.0a
8.5 ± 0.3a
Short photoperiod promotes crown bud differentiation on strawberry runners
To further study the photoperiodic control of bud differentiation, newly emerged 2- to 3-cm-long (~2-day-old) runners were marked 4, 8, 12 and 16 days after transfer to SD. Axillary bud #2 differentiated into a normal branch crown in all runners (n = 10) marked 8 days or later after transfer to SD. In runners marked after four days in SD, the differentiation of axillary bud #2 into crown buds was incomplete; four out of nine buds formed one elongated internode (> 3 mm) before producing a normal leaf rosette. Thus, axillary bud #2 differentiated into a crown bud in runners, which started to form 2 – 6 days after transfer to SD. In conclusion, the differentiation of runner axillary bud #2 can be strictly controlled, and therefore, it provides a good model to study bud differentiation in strawberry.
Timing of differentiation of axillary buds in runners
Anatomical studies of developing axillary buds on 6- and 10-day-old runners show that differentiation to either crown or runner bud takes place between these time points. On day six, SD- and LD-grown axillary buds were morphologically almost indistinguishable (Figure 2A), except that the number of cells in the first (oldest) internode was slightly higher in LD than in SD. In 10-day-old runners the buds developed in SD and LD were clearly different (Figure 2B, C). In SD buds, probably already determined as crown buds, the cell length had not increased, and the number of cells in the longitudinal axis of the first internode of the bud was almost the same as four days earlier; 26 and 30 cells (n = 5) in 6- and 10-day-old runners, respectively. By contrast, in LD, the cell number had increased, and the length of LD buds was double that of SD buds in 10-day-old runners (Figure 2C). In addition, clear longitudinal cell files were found in late LD buds compared with less regular organization of cells in SD (Figure 2B, C).
We wanted to confirm the results for timing of differentiation with Pro-Ca treatments. Nineteen 4- to 8-day-old runners were treated with 200 mg l-1 Pro-Ca under LD conditions, and the developmental fate of axillary bud #2 was determined. Axillary buds of all 4- to 6-day-old runners (8 runners) treated with Pro-Ca differentiated into branch crowns, whereas the buds in older runners (11 runners) were only partially affected; the branch crowns with an elongated first internode (5 – 10 mm) or short runners were formed. In runners older than eight days, axillary bud #2 was already committed to developing into a runner and Pro-Ca treatment could not alter or restore its fate. Thus, under the LD conditions applied, the identity of axillary bud #2 is determined in 'Korona', when the age of the runner is between 6 and 8 days.
Pro-Ca treatment and short photoperiod lead to reduced GA levels
Short photoperiod reduces GA sensitivity of axillary buds
Effect of photoperiod on the GA responsiveness of strawberry runners and axillary buds.
SD to LD-GA3
SD to LD +GA3
Runner length (mm)
129 ± 47
142 ± 44
145 ± 48
247 ± 35
Identification of putative GA biosynthesis, signalling and target genes
For gene expression studies, we isolated full-length cDNAs encoding putative strawberry GA 20-oxidase (FaGA20ox) [GenBank: DQ195504] and GA 3-oxidase (FaGA3ox) [GenBank DQ195505]. The EST clone for a putative GA 2-oxidase was sequenced earlier . A search on public databases revealed no additional GA oxidase sequences in strawberry. In addition to GA biosynthetic genes, we cloned a 816-bp fragment of putative GA signalling repressor, FaRGA [GenBank: DQ195503], and identified homologues of putative GA signalling genes SLY1 and GAI as well as two putative GA receptors, GID1b and GID1c, from public databases. In addition, a 558-bp fragment of a putative SPY homologue was found from our own Fragaria vesca EST collection (Mouhu K et al., unpublished data). As putative target genes for GA regulation we searched strawberry sequences homologous to Arabidopsis GA regulated genes and identified XERICO  and FaGAST . XERICO is a RING-H2 zinc finger protein, and FaGAST is homologous to the GA-induced GASA family of Arabidopsis and the GAST family of tomato . For the sake of clarity, common names of Arabidopsis genes are used for corresponding strawberry EST sequences.
Effect of Pro-Ca on gene expression in runner tips
Effect of Pro-Ca and photoperiod on the expression of putative GA biosynthesis, signalling and target genes in strawberry.
P2 vs. C2
P4 vs. C4
SD6 vs. LD6
SD10 vs. LD10
GA biosynthetic genes
GA signalling genes
GA target genes
Positive regulators of GA signalling, SLY and GID1b, were upregulated in Pro-Ca-treated plants, as was the XERICO homologue (Table 3). Among the negative regulators of GA signalling, both DELLA genes (GAI and RGA) were slightly downregulated by Pro-Ca. In contrast to earlier studies , GAST was upregulated in samples with reduced GA1 levels four days after Pro-Ca treatment.
Effect of photoperiod on gene expression in axillary buds
In addition to runner tips, we analysed gene expression in axillary bud #2. GA oxidase genes GA3ox and GA2ox were twofold and sevenfold reduced, respectively, in differentiated SD grown buds compared with LD buds (Table 3). In contrast, no clear differences between SD and LD were found in non-differentiated buds. Reduced GA3ox mRNA abundance in SD buds was contrary to our results for Pro-Ca-treated runners, indicating that photoperiod rather than feedback mechanism controls transcription of this gene in buds. Therefore, we analysed GA3ox expression levels also in runner tips grown in SD and LD conditions for 8 or 12 days, but no significant differences were found in these samples. However, GA2ox was 7.4-fold downregulated in SD-grown axillary buds compared with runner tips, indicating more active GA signalling in runners. In conclusion, GA3ox and GA2ox expression levels were unaffected by photoperiod in elongating runner tissues, but were downregulated in SD-grown axillary buds with crown bud identity.
Based on similar reductions in GA1 levels in SD-grown buds and Pro-Ca-treated runners, we expected to observe upregulation of GID1b, SLY, XERICO and GAST and downregulation of both DELLA genes in SD-grown differentiated axillary buds. This was in fact true for all of these genes (Table 3). However, the transcription of XERICO, GID1b, SLY and GAST was clearly upregulated also in non-differentiated SD-grown buds, although the GA1 level was not reduced (Table 3), possibly indicating some early reduced GA signalling event.
Our results confirm earlier studies on photoperiodic control of vegetative growth in strawberry and provide further evidence for involvement of GA in regulation of axillary bud differentiation into branch crowns or runners in strawberry cv. Korona. Differentiation of axillary buds in the strawberry crown is strictly regulated by photoperiod [9, 10]. We have shown that this also applies to axillary buds of runners (axillary bud #2), which can be used as models to study the regulation of bud fate. The critical photoperiod to induce runner formation in 'Korona' was between 14 and 18 h in axillary buds of both crowns and runners. Moreover, these buds responded similarly to Pro-Ca and GA3 applications, indicating a similar regulation of bud fate in crown and runners.
Different GA biosynthesis inhibitors have been shown to affect strawberry vegetative development, including runner formation and crown branching [17, 18, 22]. We found that Pro-Ca rapidly reduced elongation growth of petioles and runners and inhibited runner initiation from axillary buds after 1 – 2 days. The inhibition correlated with a moderate (41 – 68%) reduction in the level of GA1, which has been shown to be the predominant bioactive GA in strawberry [this study, [24–26]]. Interestingly, a similar reduction in GA1 level was found in SD-grown differentiated axillary bud #2 compared with differentiated LD buds, while GA1 levels were not clearly affected by photoperiod in four days younger non-differentiated buds. Olsen et al.  reported a similar drop in GA1 level in subapical tissues of Salix pentandra before the cessation of elongation growth.
GA3 application completely reversed the effect of Pro-Ca on axillary buds, but was only marginally effective on SD-grown axillary bud #2. However, the movement of plants to LD after GA3 treatment fully restored runner formation from this bud, whereas the movement of non-treated plants to LD did not affect bud fate. According to these data, a moderate drop in GA1 level in SD-grown axillary buds and in Pro-Ca-treated plants may alter bud fate, but it is also possible that photoperiod alters GA responsiveness of the buds. A similar effect has been observed in Salix pentandra .
The first anatomical sign of runner identity in LD-grown axillary buds is rapid longitudinal cell division occurring in the first internode. In contrast to LD-grown buds, cell division in internodes of SD buds is more disorganized and ceases soon after determination of branch crown identity. GA has been shown to affect elongation growth both by controlling alignment of cortical microtubules [45, 46] and by controlling cell division [47–49]. Accordingly, higher GA level/action in LD-grown strawberry axillary buds, compared with SD buds, may induce the transverse orientation of microtubules in the longitudinal axis of the cells, thereby determining the direction of cell division. Furthermore, GA may be a major inductive signal starting cell division in strawberry LD buds.
Gene expression analysis revealed that the expression of GA2ox, involved in GA inactivation, was sevenfold downregulated after both Pro-Ca and SD treatment and correlated with reduced GA1 levels. This suggests a strong feed-forward regulation, which is a common feature for several GA biosynthetic genes [35, 38, 41]. GA3ox expression was upregulated in Pro-Ca-treated plants, also indicating feedback regulation. However, we did not observe similar feedback control in SD-grown axillary buds. Instead, GA3ox expression was reduced in relation to changed GA1 level, suggesting that photoperiod may regulate its activity. Photoperiodic regulation of GA3ox was further tested in SD- and LD-grown runner tips, but no changes were found after 8 or 12 SD cycles compared with LD. We therefore postulate that GA3ox in strawberry is not necessarily regulated by photoperiod or that its regulation in buds and in runner tips is different. A local, bud-specific decrease in GA activity is supported by the finding that GA2ox was sevenfold downregulated in SD-grown axillary bud #2 compared with runner tips, while under LD it had a similar expression level in both tissues. These data are consistent with earlier findings that the biosynthesis of active GA occurs at the site of GA action [43, 50–52]. In strawberry axillary buds, subapical tissue is a potential site of GA biosynthesis and action. Thus, some unknown photoperiod-regulated factor may activate or repress runner initiation by affecting the biosynthesis of GA1 in the subapical tissues of the bud, consequently determining bud fate.
In addition to GA biosynthetic genes, we also identified six putative GA signalling and two putative target genes in strawberry. Most of these transcripts showed similar GA regulation in strawberry as the corresponding genes in Arabidopsis [35, 41]. The expression of putative positive regulators of GA signalling, GID1b and SLY, was upregulated, while that of negative regulators, RGA and GAI, was downregulated by Pro-Ca and SD, following changes at the level of GA1. Moreover, GA-responsive XERICO and GAST were upregulated after both Pro-Ca and SD treatments. The GA and SD regulation of these genes, in addition to GA2ox, indicates strictly regulated GA signalling homeostasis and reflects more active GA signalling in LD, providing molecular evidence for GA regulation of strawberry axillary bud differentiation.
XERICO, GID1b, SLY and GAST were upregulated also in non-differentiated SD-grown buds, although the GA1 level was unchanged. This may be explained by GA-independent regulation of these genes or by an early event of altered responsiveness of buds to GA in SD. This is supported by the finding that the response of strawberry axillary buds and runners to exogenous GA3 was indeed reduced in SD. In Arabidopsis, the overexpression of XERICO, a GA-downregulated RING-H2 zinc finger protein, increases ABA accumulation, being a possible link between antagonistic ABA and GA pathways . Moreover, ABA, induced by flooding, has been shown to regulate responsiveness to GA in deepwater rice intercalary meristems . Thus, threefold upregulation of XERICO in non-differentiated axillary buds in SD compared with LD could indicate that XERICO and ABA are regulators of axillary bud fate upstream of GA.
One interesting feature of strawberry is an obvious antagonism between runner formation and flowering induction. These processes have opposite responses to both exogenous GA and photoperiod, thereby raising the question about common regulation [5, 9, 13]. However, in Fragaria vesca L., seasonal flowering (SD genotype) vs. perpentual flowering as well as runnering vs. non-runnering phenotypes are determined by different single genes, "seasonal flowering locus" and "runnering locus", seasonal flowering and runnering being dominant characters [54, 55]. Emerging data from different plant species indicate that CONSTANS (CO) and FLOWERING LOCUS T (FT) are central regulators of daylength-dependent flowering induction and that FT protein acts as a long-distance signal [56–58]. Interestingly, the CO/FT module may have a more general role in daylength responses, including growth cessation and tuberization [59–61]. Hybrid poplar CENTRORADIALIS-LIKE 1 (CENL1), a gene belonging to same gene family as FT, also coincides with growth cessation . This gene is expressed mainly in the rib meristem area, and is downregulated in the shoot apex by SD. A gene homologous to CENL1 is also found in strawberry, and our gene expression data show that it is upregulated threefold in differentiated LD-grown axillary buds compared with SD buds. Moreover, anti-sense expression of apple TFL1 homologue in apple reduces the juvenile phase and produces dwarf plants, supporting the role of TFL1 in the regulation of stem elongation . The role of the CO/FT module and TFL1 in photoperiodic responses in strawberry warrants further study. In contrast to other plants, studies in Lolium temulentum indicate that photoperiodic flowering is mediated by GA5 . However, the link between photoperiodic effects and GA biosynthesis/action also remains an open question .
Our results indicate that GA functions as one of the key signals regulating the developmental fate of vegetative buds in strawberry. Some photoperiod-dependent factor(s) regulates GA biosynthesis and/or signalling in the subapical tissues of strawberry axillary buds, thereby determining bud fate. In light of these data, identification and functional characterization of the Fragaria "runnering locus" gene is of great interest. Strawberry is a potential model plant for molecular studies of short shoot/long shoot differentiation, and these studies may uncover new possibilities for controlling yield formation in various small fruit and fruit species.
Plant material and growing conditions
Cultivated strawberry (Fragaria × ananassa, Duch.) cv. Korona plants were used for the experiments carried out in greenhouse conditions at the University of Helsinki. Plants were propagated from runner cuttings, which were rooted on sphagnum peat. Plants were irrigated when needed with a complete fertilizer solution containing Ca(NO3)2 (Kemira GrowHow, Finland) and a strawberry fertilizer mixture (Mansikan täyslannos, Kemira GrowHow, Finland) in a ratio of 1:3. Air temperature in the greenhouse was maintained at 18/15°C (day/night), and daylight was supplemented with high pressure sodium (HPS) lamps (Osram NAV-T 400W, 90 ± 10 μmol m-2 s-1) for 18 h daily.
All short-day (SD) treatments (photoperiod 10, 12 or 14 h) were carried out at the greenhouse using darkening curtains, while long-day (LD) control treatments (photoperiod 18 h) were conducted in a similar greenhouse compartment without curtains. The main light period (the shortest photoperiod in each experiment) was given during natural day, which was 7 – 12 h during the experiments (October – March). During the main light period plants were illuminated by HPS lamps (90 ± 10 μmol m-2 s-1 at plant height plus natural light), and incandescent lamps were used for low-intensity daylength extension (5 ± 1 μmol m-2 s-1 at plant height), yielding nearly equal total irradiance in all photoperiods. Air temperature was 18°C during the main light period, otherwise 15°C.
Pro-Ca and GA3treatments
Pro-Ca 10% w/w a.i. (BAS 125 growth regulator, BASF, Ludwigshafen, Germany) was dissolved in water and diluted to indicated concentrations. Two to three drops of Tween 20 was added to facilitate uptake of Pro-Ca. Water containing Tween 20 was applied to control plants. Pro-Ca sprays were applied to drip-point, using a hand sprayer. To examine whether Pro-Ca-induced growth changes were caused by decreased GA levels, 25 μg of GA3 (Duchefa, Haarlem, The Netherlands) in 5 μl of 70% ethanol was applied to the tip of the youngest fully open leaf twice, one and two weeks after Pro-Ca treatments. Control plants were treated similarly with ethanol containing no GA3. Runner GA treatments were carried out by applying 25 μg of GA3 in 5 μl of 70% ethanol to the runner tip once, and control plants were similarly treated with 70% ethanol.
Gibberellin extraction, purification and detection
All samples for GA analysis were collected 5 – 7 h after the beginning of the subjective day to avoid possible diurnal changes. Runner tip samples 3 cm in length were collected from Pro-Ca-treated (50 mg l-1 a.i.) plants 1, 2 and 4 days after treatment and from water-treated control plants (day 0). Samples were collected during the linear growth stage of the runners, freeze-dried and stored at -80°C until GA extraction. Runner tip samples of 1 – 2 g (FW) were homogenized, and GAs were extracted with 85% aqueous methanol at 4°C in a shaker with added internal standards, 10 ng (runner tips) each of [2H2] GA 1, 4, 8, 9, 19, 20, 29, 53 and [2H1] GA 44 (all deuterated GAs were obtained from Prof. L. Mander, Australian National University, Canberra). Purification of GAs was done according to Junttila et al. , with the following modifications: Volumes were scaled down and purification was performed in 2 ml Eppendorf tubes. After partitioning of samples against ethylacetate, borax/hydrochloric acid pH 8 buffer (Einecs, Fluka) was applied to the samples to facilitate pH adjustment. Bead volume of Sephadex columns was 0.5 ml. In addition, smaller (100 mg) C18- and aminopropylsilyl solid-phase extraction columns (Sep-Pak, Waters, Milford, MA, USA) were used. HPLC purification and fractionation of samples and GA analysis by GC-MS were done at the University of Tromsø, as described earlier . The instrumentation consisted of a PAL autoinjector (CTC Analytics AG, Zwingen, Switzerland) and a Factor Four capillary column (VF-5 ms, 30 m × 0.25 mm ID; 0.10 μm film thickness, Varian, Middelburg, The Netherlands) installed in a Trace GC connected to a Trace DSQ single quadropole mass selective detector (ThermoFinnigan, Austin, TX, USA). XCalibur 1.3 software (ThermoFinnigan) was used to control the system and to review the data. For each GA and its 2H analogue, at least two characteristic ions were recorded. Two biological duplicates were performed for each sample.
Axillary bud samples of 5 – 15 mg (FW) were collected from LD (18 h) and SD (12 h) grown 6- and 10-day-old runner tips under a dissecting microscope, frozen in liquid nitrogen and stored at -80°C. Homogenized bud samples were extracted with added internal standards (100 pg each) and GAs were purified according to King et al. . GA analyses by GC-MS were done at the Umeå Plant Science Centre, as described earlier .
RNA extraction, cDNA synthesis and gene cloning
Strawberry total RNA was isolated using the pine tree method . mRNA was extracted with a NucleoTrap mRNA purification kit (BD Biosciences, Palo Alto, NC, USA). cDNA synthesis was performed using the 1st strand cDNA synthesis kit (Roche Diagnostics, Indianapolis, IN, US). cDNA fragments of FaGA20ox, FaGA3ox and FaRGA genes were amplified from runner tip cDNA samples by a standard RT-PCR protocol using Taq Polymerase (Roche Diagnostics). The following degenerate primers were used: FaGA20ox; 5'-TGG CCI GAY SAB GAR AAR CC-3' (sense) and 5'-CCR TTY GAW AGI GCC ATR AA-3' (anti-sense), FaGA3ox; 5'-AAR CKY ATG TGG TIY GAR GGI TT-3' (sense) and 5'-TCB GTR TGI GCD SCI AGM CCC AT-3' (anti-sense), FaRGA; 5'-GCW CAR AAR CTY GAR CAG CTT GA-3' (sense) and 5'-AAV GCT TCV AGR ATV GCT TGA TT-3' (anti-sense). The BD Smart RACE cDNA amplification kit (BD Biosciences) was used to amplify the 5' and 3' ends of FaGA20ox and FaGA3ox genes. All PCR products were cloned into a pGEM T Easy vector (Promega, Madison, WI, USA) and sequenced by ABI Prism 3100 16-capillary sequencer (Applied Biosystems, Foster City, CA, USA). Strawberry GA 2-oxidase gene has been cloned earlier . Full-length cDNA of FaGA2ox was obtained from Dr. Asaph Aharoni (Plant Research International, Wageningen, The Netherlands).
Identification of putative GA signalling and target sequences
Fragaria sequences homologous to Arabidopsis GA biosynthetic, signalling and target genes were searched for in the Genbank nucleotide and EST databases by using the tBLASTn algorithm. Homologous strawberry sequences were further analysed by the BLASTx algorithm, and only sequences showing the highest sequence homology with the corresponding Arabidopsis genes were included in real-time RT-PCR analysis.
Real-time-PCR primers used in this study.
Forward primer 5' = > 3'
Reverse primer 5' = > 3'
Rubisco small subunit 1a
Growth measurement data were subjected to one-way ANOVA when applicable. Comparisons of the means were done by Tukey's test. Statistical analyses were conducted using NCSS 2000 software.
We thank Bente Lindgård and Dr. Arild Ernstsen (University of Tromsø, Norway) for their help in GA analysis. Dr. Asaph Aharoni (Plant Research International, Wageningen, The Netherlands) is acknowledged for providing the FaGA2ox EST clone and Dr. Wilhelm Rademacher (BASF, Germany) for providing the BAS 125 growth regulator.
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