Jiang C, Gu X, Peterson T: Identification of conserved gene structures and carboxyterminal motifs in the MYB gene family of Arabidopsis and Oryza sativa L. ssp.indica. Genome Biol. 2004, 5 (7): R46-10.1186/gb-2004-5-7-r46.
Article
PubMed
PubMed Central
Google Scholar
Yanhui C, Xiaoyuan Y, Ku H, Meihua L, Jigang L, Zhaofeng G, Zhiqiang L, Yunfei Z, Xiaoxiao W, Xiaoming Q, Yunping S, Li Z, Xiaohui D, Jingchu L, Xing-Wang D, Zhangliang C, Hongya G, Li-Ji Q: The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Plant Mol Biol. 2006, 60: 107-124. 10.1007/s11103-005-2910-y.
Article
PubMed
Google Scholar
Matus JT, Aquea F, Arce-Johnson P: Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes. BMC Plant Biol. 2008, 8: 83-10.1186/1471-2229-8-83.
Article
PubMed
PubMed Central
Google Scholar
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L: MYB transcription factors in Arabidopsis. Trends Plant Sci. 2010, 15: 573-581. 10.1016/j.tplants.2010.06.005.
Article
PubMed
CAS
Google Scholar
Bomal C, Bedon F, Caron S, Mansfield SD, Levasseur C, Cooke JEK, Blais S, Tremblay L, Morency M-J, Pavy N, Grima-Pettenati J, Séguin A, MacKay J: Involvement of Pinus taeda MYB1 and MYB8 in phenylpropanoid metabolism and secondary cell wall biogenesis: a comparative in planta analysis. J Exp Bot. 2008, 59: 3925-3939. 10.1093/jxb/ern234.
Article
PubMed
CAS
PubMed Central
Google Scholar
Mellway RD, Tran LT, Prouse MB, Campbell MM, Constabel CP: The wound-, pathogen-, and ultraviolet B-responsive MYB134 gene encodes an R2R3 MYB transcription factor that regulates proanthocyanidin synthesis in poplar. Plant Physiol. 2009, 150: 924-941. 10.1104/pp.109.139071.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zhou J, Lee C, Zhong R, Ye Z-H: MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis. Plant Cell. 2009, 21: 248-266. 10.1105/tpc.108.063321.
Article
PubMed
CAS
PubMed Central
Google Scholar
Allan AC, Hellens RP, Laing WA: MYB transcription factors that colour our fruit. Trends Plant Sci. 2008, 13: 99-102. 10.1016/j.tplants.2007.11.012.
Article
PubMed
CAS
Google Scholar
Nakatsuka T, Haruta KS, Pitaksutheepong C, Abe Y, Kakizaki Y, Yamamoto K, Shimada N, Yamamura S, Nishihara M: Identification and characterization of R2R3-MYB and bHLH transcription factors regulating anthocyanin biosynthesis in gentian flowers. Plant Cell Physiol. 2008, 49: 1818-1829. 10.1093/pcp/pcn163.
Article
PubMed
CAS
Google Scholar
Hichri I, Barrieu F, Bogs J, Kappel C, Delrot S, Lauvergeat V: Recent advances on the transcriptional regulation of the flavonoid biosynthetic pathway. J Exp Bot. 2011.
Google Scholar
Spelt C, Quattrocchio F, Mol JNM, Koes R: anthocyanin1 of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes. Plant Cell. 2000, 12: 1619-1631.
Article
PubMed
CAS
PubMed Central
Google Scholar
Spelt C, Quattrocchio F, Mol J, Koes R: ANTHOCYANIN1 of petunia controls pigment synthesis, vacuolar pH, and seed coat development by genetically distinct mechanisms. Plant Cell. 2002, 14: 2121-2135. 10.1105/tpc.003772.
Article
PubMed
CAS
PubMed Central
Google Scholar
Quattrocchio F, Verweij W, Kroon A, Spelt C, Mol J, Koes R: PH4 of petunia is an R2R3 MYB protein that activates vacuolar acidification through interactions with basic-Helix-Loop-Helix transcription factors of the anthocyanin pathway. Plant Cell. 2006, 18: 1274-1291. 10.1105/tpc.105.034041.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gonzalez A, Zhao M, Leavitt JM, Llyod AM: Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J. 2008, 53: 814-827. 10.1111/j.1365-313X.2007.03373.x.
Article
PubMed
CAS
Google Scholar
Walker AR, Lee E, Bogs J, McDavid DAJ, Thomas MR, Robinson SP: White grapes arose through the mutation of two similar and adjacent regulatory genes. Plant J. 2007, 49: 772-785. 10.1111/j.1365-313X.2006.02997.x.
Article
PubMed
CAS
Google Scholar
Cutanda-Perez M-C, Ageorges A, Gomez C, Vialet S, Terrier N, Romieu C, Torregrosa L: Ectopic expression of VlmybA1 in grapevine activates a narrow set of genes involved in anthocyanin synthesis and transport. Plant Mol Biol. 2009, 69: 633-648. 10.1007/s11103-008-9446-x.
Article
PubMed
CAS
Google Scholar
Bogs J, Jaffé FW, Takos AM, Walker AR, Robinson SP: The grapevine transcription factor VvMYBPA1 regulates proanthocyanidin synthesis during fruit development. Plant Physiol. 2007, 143: 1347-1361. 10.1104/pp.106.093203.
Article
PubMed
CAS
PubMed Central
Google Scholar
Terrier N, Torregrosa L, Ageorges A, Vialet S, Verriès C, Cheynier V, Romieu C: Ectopic expression of VvMybPA2 promotes proanthocyanidin biosynthesis in Vitis vinifera L. and suggests additional targets in the pathway. Plant Physiol. 2009, 149: 1028-1041.
Article
PubMed
CAS
PubMed Central
Google Scholar
Czemmel S, Stracke R, Weisshaar B, Cordon N, Harris NN, Walker AR, Robinson SP, Bogs J: The grapevine R2R3-MYB transcription factor VvMYBF1 regulates flavonol synthesis in developing grape berries. Plant Physiol. 2009, 151 (3): 1513-1530. 10.1104/pp.109.142059.
Article
PubMed
CAS
PubMed Central
Google Scholar
Deluc L, Barrieu F, Marchive C, Lauvergeat V, Decendit A, Richard T, Carde JP, Merillon JM, Hamdi S: Characterization of a grapevine R2R3-MYB transcription factor that regulates the phenylpropanoid pathway. Plant Physiol. 2006, 140: 499-511. 10.1104/pp.105.067231.
Article
PubMed
CAS
PubMed Central
Google Scholar
Deluc L, Bogs J, Walker AR, Ferrier T, Decendit A, Merillon J-M, Robinson SP, Barrieu F: The transcription factor VvMYB5b contributes to the regulation of anthocyanin and proanthocyanidin biosynthesis in developing grape berries. Plant Physiol. 2008, 147: 2041-2053. 10.1104/pp.108.118919.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hichri I, Heppel SC, Pillet J, Léon C, Czemmel S, Delrot S, Lauvergeat V, Bogs J: The basic helix-loop-helix transcription factor MYC1 is involved in the regulation of the flavonoid biosynthesis pathway in grapevine. Mol Plant. 2010, 3: 509-523. 10.1093/mp/ssp118.
Article
PubMed
CAS
Google Scholar
Matus JT, Cañón P, Bordeu E, Alcalde JA, Arce-Johnson P: Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.). Plant Mol Biol. 2010, 72: 607-620. 10.1007/s11103-010-9597-4.
Article
PubMed
CAS
Google Scholar
Grotewold E, Sainz MB, Tagliani L, Hernandez JM, Bowen B, Chandler VL: Identification of the residues in the Myb domain of maize C1 that specify the interaction with the bHLH cofactor R. Proc Natl Acad Sci USA. 2000, 97: 13579-13584. 10.1073/pnas.250379897.
Article
PubMed
CAS
PubMed Central
Google Scholar
Hernandez JM, Heine GF, Irani NG, Feller A, Kim M-G, Matulnik T, Chandler VL, Grotewold E: Different mechanisms participate in the R-dependent activity of the R2R3 MYB transcription factor C1. J Biol Chem. 2004, 279: 48205-48213. 10.1074/jbc.M407845200.
Article
PubMed
CAS
Google Scholar
Pattanaik S, Xie CH, Yuan L: The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta. 2008, 227: 707-715. 10.1007/s00425-007-0676-y.
Article
PubMed
CAS
Google Scholar
Payne CT, Zhang F, Lloyd AM: GL3 encodes a bHLH protein that regulates trichome development in Arabidopsis through interaction with GL1 and TTG1. Genetics. 2000, 156: 1349-1362.
PubMed
CAS
PubMed Central
Google Scholar
Zhang F, Gonzalez A, Zhao M, Payne T, Llyod A: A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis. Development. 2003, 130: 4859-4869. 10.1242/dev.00681.
Article
PubMed
CAS
Google Scholar
Yoshida K, Iwasaka R, Kaneko T, Sato S, Tabata S, Sakuta M: Functional differentiation of Lotus japonicus TT2s, R2R3-MYB transcription factors comprising a multigene family. Plant Cell Physiol. 2008, 49: 157-169.
Article
PubMed
CAS
Google Scholar
Ogata K, Morikawa S, Nakamura H, Sekikawa A, Inoue T, Kanai H, Sarai A, Ishii S, Nishimura Y: Solution structure of a specific DNA complex of the Myb DNA-binding domain with cooperative recognition helices. Cell. 1994, 79: 639-648. 10.1016/0092-8674(94)90549-5.
Article
PubMed
CAS
Google Scholar
Ogata K, Morikawa S, Nakamura H, Hojo H, Yoshimura S, Zhang R, Aimoto S, Ametani Y, Hirata Z, Sarai A, et al: Comparison of the free and DNA-complexed forms of the DNA-binding domain from c-Myb. Nat Struct Biol. 1995, 2: 309-320. 10.1038/nsb0495-309.
Article
PubMed
CAS
Google Scholar
Jin H, Martin C: Multifunctionality and diversity within the plant MYB-gene family. Plant Mol Biol. 1999, 41: 577-585. 10.1023/A:1006319732410.
Article
PubMed
CAS
Google Scholar
Aravind L, Anantharaman V, Balaji S, Babu MM, Iyer LM: The many faces of the helix-turn-helix domain: Transcription regulation and beyond. FEMS Microbiol Rev. 2005, 29: 231-262.
Article
PubMed
CAS
Google Scholar
Zimmermann IM, Heim MA, Weisshaar B, Uhrig JF: Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. Plant J. 2004, 40: 22-34. 10.1111/j.1365-313X.2004.02183.x.
Article
PubMed
CAS
Google Scholar
Solano R, Fuertes A, Sanchez-Pulido L, Valencia A, Paz-Ares J: A single residue substitution causes a switch from the dual DNA binding specificity of plant transcription factor MYB.Ph3 to the animal c-MYB specificity. J Biol chem. 1997, 272: 2889-2895. 10.1074/jbc.272.5.2889.
Article
PubMed
CAS
Google Scholar
Ogata K, Kanei-Ishii C, Sasaki M, Hatanaka H, Nagadoi A, Enari M, Nakamura H, Nishimura Y, Ishii S, Sarai A: The cavity in the hydrophobic core of Myb DNAbinding domain is reserved for DNA recognition and trans-activation. Nat Struct Biol. 1996, 3: 178-187. 10.1038/nsb0296-178.
Article
PubMed
CAS
Google Scholar
Ness SA, Marknell A, Graf T: The v-myb oncogene product binds to and activates the promyelocyte-specific mim-1 gene. Cell. 1989, 59: 1115-1125. 10.1016/0092-8674(89)90767-8.
Article
PubMed
CAS
Google Scholar
Introna M, Golay J, Frampton J, Nakano T, Ness SA, Graf T: Mutations in v-myb alter the differentiation of myelomonocytic cells transformed by the oncogene. Cell. 1990, 63: 1289-1297.
Article
PubMed
CAS
Google Scholar
Kowenz-Leutz E, Herr P, Niss K, Leutz A: The homeobox gene GBX2, a target of the myb oncogene, mediates autocrine growth and monocyte differentiation. Cell. 1997, 91: 185-195. 10.1016/S0092-8674(00)80401-8.
Article
PubMed
CAS
Google Scholar
Tahirov TH, Sato K, Ichikawa-Iwata E, Sasaki M, Inoue-Bungo T, Shiina M, Kimura K, Takata S, Fujikawa A, Morii H, Kumasaka T, Yamamoto M, Ishii S, Ogata K: Mechanism of c-myb-C/EBP beta cooperation from separated sites on a promoter. Cell. 2002, 108: 57-70. 10.1016/S0092-8674(01)00636-5.
Article
PubMed
CAS
Google Scholar
Tanikawa J, Yasukawa T, Enari M, Ogata K, Nishimura Y, Ishii S, Sarai A: Recognition of specific DNA sequences by the c-myb protooncogene product: role of three repeat units in the DNA-binding domain. Proc Natl Acad Sci USA. 1993, 90: 9320-9324. 10.1073/pnas.90.20.9320.
Article
PubMed
CAS
PubMed Central
Google Scholar
Belduz AO, Lee EJ, Harman JG: Mutagenesis of the cyclic AMP receptor protein of Escherichia coli: targeting positions 72 and 82 of the cyclic nucleotide binding pocket. Nucleic Acids Res. 1993, 21: 1827-1835. 10.1093/nar/21.8.1827.
Article
PubMed
CAS
PubMed Central
Google Scholar
Tutar Y, Harman JG: Effect of salt bridge on transcription activation of CRPdependent lactose operon in Escherichia coli. Arch Biochem Biophys. 2006, 453: 217-223. 10.1016/j.abb.2006.06.019.
Article
PubMed
CAS
Google Scholar
Triezenberg SJ: Structure and function of transcriptional activation domains. Curr Opin Genet Dev. 1995, 5: 190-196. 10.1016/0959-437X(95)80007-7.
Article
PubMed
CAS
Google Scholar
Blau J, Xiao H, McCracken S, O'Hare P, Greenblatt J, Bentley D: Three functional classes of transcriptional activation domain. Mol Cell Biol. 1996, 16: 2044-2055.
Article
PubMed
CAS
PubMed Central
Google Scholar
Fields S, Song O: A novel genetic system to detect protein-protein interactions. Science. 1989, 340: 245-246.
CAS
Google Scholar
Ness SA: Myb binding proteins: regulators and cohorts in transformation. Oncogene. 1999, 18: 3039-3046. 10.1038/sj.onc.1202726.
Article
PubMed
CAS
Google Scholar
Quattrocchio F, Wing JF, van der Woude K, Mol JNM, Koes R: Analysis of bHLH and MYB domain proteins: species specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 1998, 13: 475-488. 10.1046/j.1365-313X.1998.00046.x.
Article
PubMed
CAS
Google Scholar
Schwinn K, Venail J, Shang Y, Mackay S, Alm V, Butelli E, Oyama R, Bailey P, Davies K, Martin C: A small family of MYB-regulatory genes controls floral pigmentation intensity and patterning in the genus Antirrhinum. Plant Cell. 2006, 18: 831-851. 10.1105/tpc.105.039255.
Article
PubMed
CAS
PubMed Central
Google Scholar
Elomaa P, Mehto M, Kotilainen M, Helariutta Y, Nevalainen L, Teeri TH: A bHLH transcription factor mediates organ, region and flower type specific signals on dihydroflavonol-4-reductase (dfr) gene expression in the inflorescence of Gerbera hybrida (Asteraceae). Plant J. 1998, 16: 93-99. 10.1046/j.1365-313x.1998.00273.x.
Article
PubMed
CAS
Google Scholar
Pattanaik S, Kong Q, Zaitlin D, Werkman JR, Xie CH, Patra B, Yuan L: Isolation and functional characterization of a floral tissue-specific R2R3 MYB regulator from tobacco. Planta. 2010, 231: 1061-1076. 10.1007/s00425-010-1108-y.
Article
PubMed
CAS
Google Scholar
Gabrielsen OS, Sentenac A, Fromageot P: Specific DNA binding by c-Myb: evidence for a double helix-turn-helix-related motif. Science. 1991, 253: 1140-1143. 10.1126/science.1887237.
Article
PubMed
CAS
Google Scholar
Murashige T, Skoog F: A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol Plant. 1962, 15: 473-477. 10.1111/j.1399-3054.1962.tb08052.x.
Article
CAS
Google Scholar
Takos AM, Jaffé F, Jacob SR, Bogs J, Robinson SP, Walker AR: Light-induced expression of a MYB gene regulates anthocyanin biosynthesis in red apples. Plant Physiol. 2006, 142: 1216-1232. 10.1104/pp.106.088104.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kopp J, Guex N, Peitsch MC: SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res. 2003, 31: 3381-3385. 10.1093/nar/gkg520.
Article
PubMed
PubMed Central
Google Scholar
Emsley P, Cowtan K: Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr. 2004, 60: 2126-2132. 10.1107/S0907444904019158.
Article
PubMed
Google Scholar
Adams PD, Afonine PV, Bunkóczi G, Chen VB, Davis IW, Echols N, Headd JJ, Hung LW, Kapral GJ, Grosse-Kunstleve RW, McCoy AJ, Moriarty NW, Oeffner R, Read RJ, Richardson DC, Richardson JS, Terwilliger TC, Zwart PH: PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr. 2010, 66: 213-221. 10.1107/S0907444909052925.
Article
PubMed
CAS
PubMed Central
Google Scholar
Horsch RB, Fry JE, Eichlotz D, Rogers SG, Frakey RT: A simple and general method for transferring genes into plants. Science. 1985, 227: 1229-1231.
Article
CAS
Google Scholar
Reid KE, Olsson N, Schlosser J, Peng F, Lund ST: An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol. 2006, 6: 1-11. 10.1186/1471-2229-6-1.
Article
Google Scholar
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3: research0034.1-research0034.11. 10.1186/gb-2002-3-7-research0034.
Article
Google Scholar
Gouet P, Courcelle E, Stuart DI, Metoz F: ESPript: multiple sequence alignments in PostScript. Bioinformatics. 1999, 15: 305-308. 10.1093/bioinformatics/15.4.305.
Article
PubMed
CAS
Google Scholar
DeLano WL: The PyMOL Molecular Graphics System. 2002, [http://www.pymol.org]
Google Scholar
Horstmann V, Huether CM, Jost W, Reski R, Decker EL: Quantitative promoter analysis in Physcomitrella patens: a set of plant vectors activating gene expression within three orders of magnitude. BMC Biotechnol. 2004, 4: 1-13. 10.1186/1472-6750-4-1.
Article
Google Scholar