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Comparative analysis of stress-induced calcium signals in the crop species barley and the model plant Arabidopsis thaliana



Plants are continuously exposed to changing environmental conditions and biotic attacks that affect plant growth. In crops, the inability to respond appropriately to stress has strong detrimental effects on agricultural production and yield. Ca2+ signalling plays a fundamental role in the response of plants to most abiotic and biotic stresses. However, research on stimulus-specific Ca2+ signals has mostly been pursued in Arabidopsis thaliana, while in other species these events are little investigated .


In this study, we introduced the Ca2+ reporter-encoding gene APOAEQUORIN into the crop species barley (Hordeum vulgare). Measurements of the dynamic changes in [Ca2+]cyt in response to various stimuli such as NaCl, mannitol, H2O2, and flagellin 22 (flg22) revealed the occurrence of dose- as well as tissue-dependent [Ca2+]cyt transients. Moreover, the Ca2+ signatures were unique for each stimulus, suggesting the involvement of different Ca2+ signalling components in the corresponding stress response. Alongside, the barley Ca2+ signatures were compared to those produced by the phylogenetically distant model plant Arabidopsis. Notable differences in temporal kinetics and dose responses were observed, implying species-specific differences in stress response mechanisms. The plasma membrane Ca2+ channel blocker La3+ strongly inhibited the [Ca2+]cyt response to all tested stimuli, indicating a critical role of extracellular Ca2+ in the induction of stress-associated Ca2+ signatures in barley. Moreover, by analysing spatio-temporal dynamics of the [Ca2+]cyt transients along the developmental gradient of the barley leaf blade we demonstrate that different parts of the barley leaf show quantitative differences in [Ca2+]cyt transients in response to NaCl and H2O2. There were only marginal differences in the response to flg22, indicative of developmental stage-dependent Ca2+ responses specifically to NaCl and H2O2.


This study reveals tissue-specific Ca2+ signals with stimulus-specific kinetics in the crop species barley, as well as quantitative differences along the barley leaf blade. A number of notable differences to the model plants Arabidopsis may be linked to different stimulus sensitivity. These transgenic barley reporter lines thus present a valuable tool to further analyse mechanisms of Ca2+ signalling in this crop and to gain insights into the variation of Ca2+-dependent stress responses between stress-susceptible and -resistant species.

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Plants as sessile organisms are exposed to constantly changing conditions in their environment that require short-term acclimation responses enabling them to fulfil their lifecycle. Thus, it is crucial to understand mechanisms of stress response to maintain and improve crop production, especially in the face of increasing global climate changes [1]. Interestingly, plants show different sensitivity to environmental factors depending on their genetic make-up, which defines adaptive mechanisms enabling different degrees of stress tolerance [2]. In the last decades, the model plant Arabidopsis thaliana has been extensively studied to decipher the molecular basis of stress tolerance; however, the study of more stress-tolerant species is more likely to yield relevant information.

Barley (Hordeum vulgare L.) is well-adapted to a wide range of environmental conditions and has a relatively high tolerance to drought and salinity compared to other crops and Arabidopsis [3,4,5]. With an acreage of ~ 50 million hectares, barley is the fourth-most cultivated cereal crop in the world after maize (Zea mays), rice (Oryza sativa), and wheat (Triticum aestivum), which makes it a versatile commodity in many different countries. Therefore, determining and understanding the biological mechanisms involved in barley stress responses are important for the improvement of this valuable crop and can also contribute to a better understanding of those mechanisms in other cereal crops.

Generally, plants respond to environmental stimuli by initiating signalling cascades that coordinate plant adaptive responses that contribute to stress tolerance [6, 7]. These cascades comprise a collection of signalling compounds and downstream signalling events, including posttranslational protein modifications and regulation of gene expression. Calcium (Ca2+) is a major signalling ion involved in responses to a wide range of abiotic and biotic stresses. As a basis for Ca2+ signalling, and due to its cytotoxicity, resting levels of the free Ca2+ concentration in the cytosol ([Ca2+]cyt) are maintained in the nanomolar range [8, 9]. The perception of stimuli and stresses induces transient increases in [Ca2+]cyt with stimulus-specific spatio-temporal parameters such as frequency, amplitude and duration, defined as “Ca2+ signatures” [10, 11]. Several studies showed that this increase in [Ca2+]cyt is one of the earliest signalling events in plants challenged by biotic elicitors [12,13,14], herbivory [15], as well as abiotic stimuli including salt and osmotic stress [16, 17], oxidative stress [18], light stress [19], or cold stress [12, 20].

The stimulus-induced increases of [Ca2+]cyt result from the influx of Ca2+ via Ca2+-permeable channels, either from intracellular Ca2+ stores or across the plasma membrane from the apoplast. These elevations in [Ca2+]cyt are in turn counteracted by the activity of Ca2+ transporters or ATPases extruding Ca2+ out of the cytosol to restore the low basal level of [Ca2+]cyt. In Arabidopsis, multiple families of Ca2+-permeable channels, transporters and pumps have been identified, each with several members [21]. However, the specific function and regulation of the individual proteins, as well as their combined action to shape Ca2+ signatures are still widely unknown [22].

The information encoded by Ca2+ signatures is generally detected and decoded by a toolkit of Ca2+ sensors, which in turn interact with and activate downstream targets to contribute to the stimulus-specific cellular response [23, 24]. In plants, these Ca2+ sensors are primarily calmodulins (CaMs), calmodulin-like proteins (CMLs), Ca2+-dependent protein kinases (CDPKs), as well as calcineurin B-like proteins (CBLs) and their interacting protein kinases (CIPKs) [25]. These sensors are encoded by large gene families with a plethora of known targets, underscoring the tremendous importance of Ca2+ signalling in plants [26, 27]. The interplay of Ca2+ signatures and Ca2+ sensors is supposed to confer the specificity and flexibility of Ca2+ signalling required to respond to various stimuli in a tissue- and development-dependent manner.

Since the 1990s, the bioluminescent Ca2+ reporter aequorin, originating from the jellyfish Aequoria victoria, has enabled tremendous advances in the detection of Ca2+ signals in living plants [12] and is today still instrumental in our quest towards a mechanistic understanding of Ca2+ signal generation [28, 29]. The vast majority of such studies on Ca2+ signals in response to abiotic and biotic stimuli has been performed on Arabidopsis, and it is currently largely unknown how far plant species differ in this respect. Differences in Ca2+ responses to salt, oxidative stress, and pathogen-associated molecular patterns (PAMPs) have been found in studies comparing rice and Arabidopsis, possibly related to differences in their mechanisms to cope with the stresses [30, 31]. Signalling pathways in other cereals that hold monumental contributions to human and animal nutrition are widely uncharted.

In this study, the stable transformation of barley plants with APOAEQUORIN targeted to the cytosol enabled us to analyse [Ca2+]cyt signals in this crop. The transgenic plants exposed to different abiotic stimuli (mannitol, NaCl, and H2O2) and the PAMP flg22 showed increases in [Ca2+]cyt in a dose- and tissue-dependent manner. The spatio-temporal patterns of the cytosolic Ca2+ dynamics (Ca2+ signature) were unique for each stimulus. Furthermore, we revealed a conspicuous spatial heterogeneity of Ca2+ responses to some stimuli along the blade of barley leaves, indicating a dependence on the developmental stage of the cells. Compared to Arabidopsis notable differences in the barley Ca2+ signatures were observed. The comparison of Ca2+ signatures between barley and Arabidopsis, phylogenetically distant species with different stress tolerance, highlights the diversity in Ca2+ signals in higher plants and might help to reveal novel aspects in stress response mechanisms.


Generation of transgenic barley lines expressing APOAEQUORIN

To monitor [Ca2+]cyt changes in barley, transgenic lines expressing the genetically encoded Ca2+ sensor APOAEQUORIN under the control of the ZmUBI1 promoter were developed and named Hv-AEQcyt. Four independent transgenic lines (Hv-AEQcyt #8, #13, #17, and #18), based on the barley cultivar Golden Promise, were selected. To estimate the abundance of APOAEQUORIN in these lines, the aequorin-based luminescence was recorded in excised leaf tips (5 mm) after reconstitution with coelenterazine by injecting a discharge solution. Upon application of the discharge solution, all transgenic lines showed an increase in luminescence, with line #18 showing the highest intensity (Fig. 1A). The functionality of aequorin and the reliability of the conversion equation were further tested in the Hv-AEQcyt lines #18 and #17, which strongly differed in total luminescence. Upon injection of 10 mM H2O2, a rapid increase in [Ca2+]cyt was observed in both lines with identical kinetic patterns (Fig. 1B), independent of the strength of the discharge in these lines. These results indicate that the transgenic barley lines carrying APOAEQUORIN can faithfully report changes in [Ca2+]cyt and thus can be employed to investigate [Ca2+]cyt signals in response to different stimuli. All further studies were then performed with line Hv-AEQcyt #18.

Fig. 1
figure 1

Selection and characterization of Hv-AEQcyt lines. A Ca2+-dependent photon release in relative light units (RLU) of different transgenic barley lines expressing the recombinant APOAEQUORIN (Hv-AEQcyt #8, #13, #17, and #18) after discharge of aequorin. B [Ca2+]cyt of Hv-AEQcyt #17 and #18 in response to H2O2 (10 mM). The dashed line represents the time point of H2O2 injection. C Transcript level of APOAEQUORIN in leaves and roots of Hv-AEQcyt #18 determined against a cDNA dilution series and normalized to Actin (AY145451.1). D Abundance of aequorin in leaves and roots of Hv-AEQcyt #18 and wild type (WT) as negative control determined by immunodetection using a specific antibody against aequorin. Values represent means ± SE of three independent replicates

Quantitative RT-PCR analysis on RNA from leaves and roots of Hv-AEQcyt #18 confirmed that APOAEQUORIN is expressed in both tissues (Fig. 1C). In addition, western blot analysis using an aequorin-specific antibody detected the protein in leaves and roots of the transgenic plants (Fig. 1D; Fig. S1A). A photon-counting camera system was employed to record spatially resolved luminescence intensity of intact three-day-old seedlings. Upon application of discharge solution, luminescence was observed throughout shoot and roots (Fig. S1B-D), confirming the presences of APOAEQUORIN and its successful reconstitution to aequorin in both tissues.

The insertion of the APOAEQUORIN gene did not result in any notable phenotypic differences to the wild type in the transgenic plants, neither during early development nor maturity (Fig. 2, Fig. S2). The fresh weight of three-day-old seedlings, as well as the length of roots and leaf blades of five-day-old seedlings, was comparable between both genotypes (Fig. 2). Furthermore, there was no visible difference in spike development, seed set (Fig. S2A) or difference in thousand grain weight compared to wild type (Fig. S2B).

Fig. 2
figure 2

Seedlings of Hv-AEQcyt #18 shows no quantifiable differences to the wild type. A Visual phenotype of three-day-old barley wild type (WT) and transgenic (Hv-AEQcyt #18) plants grown under long-day conditions on vermiculite (left panel; bar = 1 cm) and fresh weight (FW) of those plants (right panel). B Visual phenotype of five-day old plants grown under the same conditions (left panel; bar = 1 cm) and length of leaf blades and roots of those plants (right panel). Values represent means ± SE of eight independent plants

[Ca2+]cyt changes in barley and Arabidopsis induced by NaCl

To reveal stimuli-induced changes in [Ca2+]cyt, leaf and root tips of three-day-old Hv-AEQcyt #18 barley plants grown on vermiculite were analysed in a luminometer by the use of 96 well plates. For comparison, measurements were carried out on APOAEQUORIN-expressing Arabidopsis seedlings [20, 32]. Due to the developmental differences between barley and Arabidopsis, the entire shoot and root of five-day-old Arabidopsis seedlings, grown under the same conditions, were used for the measurements.

NaCl-induced increases in [Ca2+]cyt were observed in the leaf and root of barley in a dose-dependent manner (Fig. 3A, B). NaCl induced a fast and sharp increase of [Ca2+]cyt in both tissues that quickly declined within 50 s to nearly resting levels (Fig. S3A, B). The amplitude of the [Ca2+]cyt increase (Δ[Ca2+]cyt) varied depending on NaCl concentration and tissue. Already 50 mM NaCl induced obvious increases in [Ca2+]cyt in both tissues, which was more pronounced in the root (Fig. 3A, B). The response became stronger with increasing NaCl concentration, reaching a maximum peak at about 0.5 μM Δ[Ca2+]cyt upon treatment with 250 mM NaCl, which was more prolonged in leaf tips compared to the root (Fig. 3B, C). The NaCl treatments also induced dose-dependent [Ca2+]cyt rises in Arabidopsis, but with dynamics notably different to those in barley (Fig. 3A - D; Fig. S3C, D). In Arabidopsis the application of 250 mM NaCl evoked a higher increase in [Ca2+]cyt with a peak at about 0.7 μM Δ[Ca2+]cyt in leaves (Fig. 3 A, C), while in roots the increase was lower and comparable to that in barley (Fig. 3B, D). The time to reach the maximal [Ca2+]cyt after application of 250 mM NaCl differed significantly between the tissues but not between the two species (Fig. 3E). The maximal increase was reached after 15 to 22 s in Arabidopsis and barley leaves, while in root tissues this point was reached already after 7 to 10 s. Secondary small [Ca2+]cyt elevations were recorded in roots of Arabidopsis that were not seen in barley roots (Fig. S3B, D). This heterogeneity in Ca2+ responses between shoot and root has been already described in Arabidopsis, and it was suggested to result from the different cell populations in the tissues [33, 34]. The differences in NaCl-induced [Ca2+]cyt signals between the two species could be due to the fact that only root and leaf tips were used in barley. However, they also likely impinge on downstream processes of salt signalling and may be related to the differential responsiveness of Arabidopsis and barley to salt stress [35].

Fig. 3
figure 3

Induction of Ca2+ signals in response to NaCl. Maximal Δ[Ca2+]cyt in barley and Arabidopsis leaf (A) and root (B) tissue induced by different concentrations of NaCl. Time courses of changes in [Ca2+]cyt induced by 250 mM NaCl in leaf (C) and root (D) tissues. The dashed lines represent the time point of injection of the treatment. E Time to reach the maximal increase of [Ca2+]cyt after injection of 250 mM NaCl in seconds (s). Values represent means ± SE of three independent replicates

[Ca2+]cyt changes in barley and Arabidopsis induced by mannitol

Mannitol is an osmotic substance commonly used to mimic drought stress [16, 36, 37]. Time-course analysis of cytosolic Ca2+ responses showed that barley leaf and root tips were little affected by mannitol (Fig. S4 A, B). In leaf tips, only stimulation with 250 mM mannitol caused a very small long-lasting [Ca2+]cyt elevation (Fig. 4A; Fig. S4A). In the root tip, a fast [Ca2+]cyt transient was observed at higher mannitol concentrations (Fig. S4B), however, even with 250 mM mannitol the [Ca2+]cyt amplitude was less than 0.1 μM Δ[Ca2+]cyt (Fig. 4B, C). This fast but relatively weak [Ca2+]cyt increase lasted for 30-40 s before declining to a new, slightly higher resting level (Fig. 4C). Luminescence imaging experiments confirmed that the Ca2+-dependent photon release upon mannitol treatment originated only in the root system (Fig. S5).

Fig. 4
figure 4

Induction of Ca2+ signals in response to mannitol. A Time course of changes in [Ca2+]cyt induced by 250 mM mannitol in leaf tissue of barley and Arabidopsis. The dashed lines represent the time point of injection of the treatment. B Maximal increases in Δ[Ca2+]cyt in leaf and root tissue induced by different concentrations of mannitol. C Time courses of changes in [Ca2+]cyt induced by 250 mM mannitol in root tissues . The dashed lines represent the time point of injection of the treatment. D Time to reach the maximal increase of [Ca2+]cyt after injection of 250 mM mannitol in seconds (s). Values represent means ± SE of three independent replicates

Similar to barley, Arabidopsis showed no fast [Ca2+]cyt increase in response to mannitol in leaves (Fig. 4A; Fig. S4C). However, in contrast to barley, mannitol induced a strong and dose-dependent response with different dynamics in Arabidopsis roots (Fig. 4B, C; Fig. S4D). Application of 250 mM mannitol induced an increase in Arabidopsis roots with a peak of about 0.5 μM Δ[Ca2+]cyt (Fig. 4B, C). The time to reach the maximal [Ca2+]cyt in the roots upon application of 250 mM mannitol was not significantly different between barley and Arabidopsis at around 8 to 11 s (Fig. 4D). In addition to this first spike, Arabidopsis roots showed smaller, secondary [Ca2+]cyt elevations before returning to the basal level, which were not recorded in barley. Taken together, the results indicated that osmotically triggered Ca2+ signals differ between Arabidopsis and barley.

[Ca2+]cyt changes in barley and Arabidopsis induced by flg22

As a biotic stimulus, effects of the PAMP flg22 on [Ca2+]cyt transients were investigated. In barley, application of flg22 evoked a clear response only in the leaf but not in the root (Fig. 5A-C; Fig. S6A, B). The [Ca2+]cyt elevations were induced at concentrations above 200 nM flg22 and they were relatively weak with no sharp spike (Fig. 5A, B). Treatment with 200 nM flg22 induced a Ca2+ transient with a maximum of 0.05 μM Δ [Ca2+]cyt (Fig 5A, B). The increase in [Ca2+]cyt started with a delay of approximately 90 s after injection of the elicitor and declined very slowly over minutes to the basal level (Fig. 5B). Also in Arabidopsis, a clear response was observed in leaves (Fig. 5 B; Fig. S6C). Durations and shape of the response curves were similar to barley; however, the onset of the response occurred slightly faster (Fig. 5B). Arabidopsis leaves responded to flg22 already at 100 nM, a concentration for which no signal could be recorded in barley (Fig. 5A; Fig. S6A, C). The maximal increase of [Ca2+]cyt after application of 200 nM flg22 was reached earlier in Arabidopsis as in barley within approximately 190 s and 300 s, respectively (Fig. 5B, D). As with barley, Ca2+ signals in response to flg22 were not detected in the roots of Arabidopsis (Fig. 5C; Fig. S6D). This has already been described for Arabidopsis [38], and our data extend the tissue specificity of the flg22-induced Ca2+ response to barley.

Fig. 5
figure 5

Induction of Ca2+ signals in response to flg22. A Maximal increases in Δ[Ca2+]cyt in barley and Arabidopsis leaf tissue induced by different concentrations of flg22. Time courses of changes in [Ca2+]cyt induced by 200 nM flg22 in leaf (B) and root (C) tissues. The dashed lines represent the time point of injection of the treatment. D Time to reach the maximal increase of [Ca2+]cyt after injection of 200 nM flg22 in seconds (s). Values represent means ± SE of three independent replicates

[Ca2+]cyt changes in barley and Arabidopsis induced by H2O2

Ca2+ dynamics in response to oxidative stress were analysed by treatment with the reactive oxygen species H2O2. Analysis of the [Ca2+]cyt responses showed that in barley H2O2 induced a dose-dependent response in form of a sharp albeit slightly delayed increase in [Ca2+]cyt in both tissues (Fig. 6A – D; Fig. S7A, B). The maximal Δ[Ca2+]cyt increase of about 0.4 μM was reached at a concentration of 10 mM H2O2, while application of higher concentrations of H2O2 resulted in a reduced response (Fig. 6A, B). Instead of a fast return to the baseline, the [Ca2+]cyt declined gradually within 100 s to a new and elevated level (Fig. 6C, D; Fig. S7A, B). Treatment of Arabidopsis leaves and roots with 10 mM H2O2 resulted in [Ca2+]cyt increases much lower than those induced in barley with a peak at about 0.2 and 0.25 μM Δ[Ca2+]cyt in leaves and roots (Fig. 6 A-D; Fig. S7C, D). The response in Arabidopsis could be further elevated by higher H2O2 concentrations, reaching peak heights similar to barley at 15 mM and also decreasing upon higher concentrations (Fig. 6A, B; Fig. S7C, D). In both species, the maximal increase in [Ca2+]cyt upon treatment with 10 mM H2O2 was reached within approximately 40 s, with the exception of Arabidopsis shoots that responded a little slower at about 50 s (Fig. 6E). Also, the shape of the [Ca2+]cyt transients in Arabidopsis differed from those in barley (Fig. S7), with a broader peak and an additional secondary shoulder, indicating differences in H2O2-triggered Ca2+ signalling in both species.

Fig. 6
figure 6

Induction of Ca2+ signals in response to H2O2. Maximal increases in Δ[Ca2+]cyt in barley and Arabidopsis leaf (A) and root (B) tissue induced by different concentrations of H2O2. Time courses of changes in [Ca2+]cyt induced by 10 mM H2O2 in leaf (C) and root (D) tissues. The dashed lines represent the time point of injection of the treatment. (E) Time to reach the maximal increase of [Ca2+]cyt after injection of 10 mM H2O2 in seconds (s). Values represent means ± SE of three independent replicates

Spatial distribution of stimulus-induced [Ca2+]cyt responses in barley leaves

In the experiments described above, we measured [Ca2+]cyt in the leaf tip of barley. However, in barley, growing leaves show a developmental gradient along the leaf blade [39, 40]. To investigate whether the stimulus-induced [Ca2+]cyt response is uniform along this developmental gradient, we analysed spatio-temporal dynamics of the [Ca2+]cyt transients in different sections of the leaf. For this, leaves of five- and seven-day-old Hv-AEQcyt#18 plants, were separated into 5 mm sections from the tip to the base resulting in five and ten parts, respectively (Fig. 7). The sections were challenged with 250 mM NaCl, 10 mM H2O2 or 200 nM flg22. Mannitol was not tested since it did not show any [Ca2+]cyt response in the leaf tip. In all leaf sections, there were little temporal differences in [Ca2+]cyt increases upon application of the stimuli (Fig. S8). However, the peak heights showed a specific spatial distribution along the leaf blade in response to NaCl and H2O2 (Fig. 7; Fig. S8).

Fig. 7
figure 7

Changes in [Ca2+]cyt in response to NaCl, H2O2, and flg22 in different sections of barley leaves. Maximal increases in [Ca2+]cyt in different leaf sections, as shown in the left panel, of five-day-old (A) or seven-day-old (B) barley plants in response to 250 mM NaCl, 10 mM H2O2, and 200 nM flg22. Pictures of the partitioning of the barley leaves are representative. Values represent means ± SE of three independent replicates. Letters represent significant differences between the sections according to a One-way ANOVA with Tukey test (P< 0.05)

In the five-day-old leaves, the intensity of the Ca2+ signal increased in a linear gradient from the tip (S1) to the base (S5) in case of NaCl application (Fig. 7A), while the H2O2-treated leaves showed the strongest response in the tip, which decreased towards the base (Fig. 7A). Barley leaves grow at the base of the leaf; therefore, the topmost five sections of the seven-day-old leaves corresponded to the five sections of the five-day-old leaves, with the additional five sections representing newly grown tissue. Similar to five-day-old plants, the response to NaCl increased from the top towards the leaf base also in seven-day-old barley plants. However, whereas the response to H2O2 in the five upmost sections of a seven-day-old plant mirrored the decline observed in five-day-old plants, the response increased again progressively in the last sections toward the basal part of the leaf (Fig. 7B). Whereas no significant differences in the intensity of [Ca2+]cyt along the leaf blade were recorded in five-day-old plants treated with flg22, the amplitude of the peaks were slightly increased in the elongation zone of seven-day-old plants (Fig 7). To confirm that the physical wounding of the leaves in consequence of the sectioning did not alter the stress response, aequorin-based luminescence signals were analysed in five-day-old intact plants in response to H2O2 using a photon-counting camera system (Fig. S9A). Indeed, similar response patterns to the sectioned leaf were observed with the leaf tip showing the highest Ca2+ signal and a decreasing trend along the blade (Fig. S9B, C).

Contribution of external Ca2+ stores to stress-induced [Ca2+]cyt transients in barley

La3+, a widely used blocker of plasma membrane Ca2+ channels [34] was used to investigate the contribution of the apoplast to the [Ca2+]cyt elevations in barley (Fig. 8). Pre-incubation of samples with LaCl3 had similar inhibitory effects on [Ca2+]cyt responses to NaCl in both leaf and root tips with about 80% inhibition (Fig. 8). In the case of H2O2, the effect of LaCl3 was slightly weaker in both tissues with about 60% inhibition. For mannitol and flg22, only root tips or leaf tips were analysed, respectively, because the response to these stimuli was strictly tissue-specific (Fig. 4, 5). Here, LaCl3 resulted in a 90% inhibition of the response to flg22 in the leaf tips and almost complete inhibition of the response to mannitol in root tips. Overall, these results demonstrate the requirement of Ca2+ influx from the apoplast for the generation of the response to all tested stimuli in both leaves and roots but also suggests a minor role of internal stores.

Fig 8
figure 8

Effect of LaCl3 pre-treatment on stress-mediated Ca2+ signals. Inhibitory effect on the maximal [Ca2+]cyt increase in response to 200 mM NaCl, 10 mM H2O2, 200 nM flg22, and 200 mM mannitol after pre-treatment of barley leaf tips (A) and root tips (B) with 1 mM LaCl3 for one hour relative to control conditions without pre-treatment. Values represent means ± SE of three independent replicates. Asterisks indicate significant differences from the control without pre-treatment according to Student’s t test (* = P>0.05; ** = P>0.01)


The aequorin bioluminescence reporter system is a powerful tool to visualize [Ca2+] transients and thus to analyse Ca2+ signals that occur in response to a variety of biotic and abiotic stresses in planta [12, 41]. In this work, we established barley lines harbouring aequorin in the cytosol. The transgenic lines show a Ca2+-dependent photon release after discharge, stimulus-dependent [Ca2+]cyt transients, and no discernible phenotypic differences to the wild type (Fig. 1, 2; Fig. S2). Therefore, these lines were suitable to analyse Ca2+ signals in response to different stimuli in the crop species barley and to compare them with those in the model plant Arabidopsis.

Overall, barley and Arabidopsis showed stimulus-induced [Ca2+]cyt responses with similar tissue-specificity. Both plants reacted strongly to NaCl and H2O2 in leaves as well as in roots. By contrast, the response to mannitol and flg22 was tissue-dependent, taking place either in the root or in the leaf, respectively (Figs. 3, 4, 5 and 6). Main differences between barley and Arabidopsis occurred with regard to amplitude and shape of the response curve as well as the intensities of the stimuli required to elicit an increase in [Ca2+]cyt. These disparities might be indicators for species-specific differences in stress response mechanisms.

The [Ca2+]cyt transients differed in osmotic stresses triggered either by salinity (ionic) (Fig. 3) or mannitol (non-ionic) (Fig. 4). In both, Arabidopsis and barley, a dose-dependent [Ca2+]cyt response to NaCl occurred in form of an initial sharp spike, sometimes followed by several much smaller spikes (Fig. 3; Fig. S3). The latter might be due to other factors inducing a secondary response, with H2O2 being a likely candidate [42]. For Arabidopsis, it has also been suggested that these secondary Ca2+ spikes might arise from different cell populations within the tissues [33, 34]. While the maximum height of the [Ca2+]cyt increase in the root was similar between the two plants, the Ca2+ response in shoot was higher in the more salt-sensitive Arabidopsis. In Arabidopsis, the SOS (salt overly sensitive) pathway has been suggested to be essential for salt tolerance [43]. The SOS pathway consists of a Ca2+ sensor-protein kinase complex (SOS3/CBL4-SOS2/CIPK24), which activates the Na+/H+ antiporter SOS1 by phosphorylation to clear cytosolic Na+ during salt stress. The higher responsiveness of Arabidopsis shoots thus might be related to an increased Na+ accumulation due to an inferior ability of this plant to exclude Na+. Components of the SOS pathway are conserved in several plants including crops like maize, rice, and tomato [44,45,46,47], but have not yet been characterized in barley.

By contrast to salt, osmotic stress triggered by mannitol mimics drought stress and caused transient and dose-dependent increases in [Ca2+]cyt in the roots of barley and Arabidopsis, whereas leaves of both species did not show any response (Fig. 4; Fig. S4 and 5). Similar to NaCl, both plants showed a rapid initial [Ca2+]cyt increase in response to mannitol; however, the response in barley roots was much less pronounced compared to Arabidopsis (Fig. 4C). Furthermore, barley root tips showed a prolonged [Ca2+]cyt elevation slightly above the baseline level, while Arabidopsis showed several secondary peaks but no sustained elevation (Fig. S4). As with salt, barley is considered to have a higher tolerance to this abiotic stress [48], and this might be related to the different [Ca2+]cyt transients observed. Due to the concomitantly reduced diffusion of K+ in dry soils, drought stress is known to impair the influx of K+ across the plasma membrane [49]. However, K+ serves as a compatible osmolyte under osmotic stress. Hence, in barley mannitol was shown to initiate K+ fluxes for initial osmotic adjustment likely mediated by activation of inward-rectifying K+ channels and transporters in the plasma membrane [50]. The primary root-borne K+ uptake systems of Arabidopsis, such as AKT1 and HAK5, are activated by Ca2+-mediated phosphorylation [51] and may hence present a target of the osmotically induced Ca2+ signal. The consequence of the lower amplitude of the signal in barley on the activation of K+ fluxes remains to be elucidated.

In Arabidopsis, Ca2+ elevations in response to hyperosmotic stress depend on OSCA1, which operates as an osmosensor in the root and guard cell plasma membrane [52, 53]. In addition, Ca2+ channel-forming annexins activated by hydroxyl radicals may play a role under osmotic and salt stress conditions [54], a mechanism that has also been suggested for barley [50]. OSCAs and annexins are likely candidates for the generation of Ca2+ signals in this crop, yet this remains to be shown. Salinity and hyperosmotic stress activate in addition phosphoinositide signalling that leads to the generation of two secondary messengers, inositol 1,4,5-trisphosphate (IP3) and 1,2-diacylglycerol [55, 56], required for the accumulation of proline in Arabidopsis and barley [57, 58]. In animals, IP3 acts as a Ca2+-mobilizing ligand of IP3 receptor Ca2+ channels in endomembranes. Although early biochemical and electrophysiological studies pointed to a similar mechanism in plants, there is no genetic evidence for this [59].

Contrary to mannitol, flg22-induced [Ca2+]cyt transients were mainly observed in leaves in both species (Fig. 4; Fig. S6). Though flg22 responses have been shown in Arabidopsis shoots and roots by Beck and co-workers [60], our results are in agreement with other studies showing only marginal changes in [Ca2+]cyt in Arabidopsis roots upon flg22 treatment [61]. Time-course analysis showed a long-lasting response in barley leaf tips with kinetics comparable to those in Arabidopsis shoots. In Arabidopsis, this aequorin-based read-out of [Ca2+]cyt transients triggered by flg22 is an integration of Ca2+ oscillations in non-synchronized individual cells, as shown for guard cells, which provoke stomatal closure to prevent pathogen entry [14]. It is likely but remains to be demonstrated that flg22 triggers an oscillatory response also in barley. The most obvious difference between Arabidopsis and barley was the higher concentration of flg22 required to elicit a response in barley shoots (Fig. S6). This may be caused by different affinity of the flg22 sensor, FLS2, in both species and may translate to different thresholds of defence responses. While an increases in [Ca2+]cyt is known to be crucial for cellular downstream responses [61] many of the signalling events downstream of flg22 sensing have been elucidated in Arabidopsis, but not yet analysed in barley. This includes the mechanism of flg22-triggered Ca2+ signal generation by a plasma membrane-localized Ca2+ channel, OSCA1.3, which mediates the guard cell-specific Ca2+ influx upon phosphorylation by the cytosolic immune receptor-associated protein kinase BIK1 [62]. The operation of OSCA1.3 orthologs in barley remains to be shown. In Arabidopsis, flg22-induced [Ca2+]cyt signals partially depend on an oxidative burst, generated by NADPH oxidases [14]. Thereby NADPH/respiratory burst oxidase D (RBOHD) and, to a lesser extent, RBOHF, generate ROS in the apoplast [63]. Interestingly, in barley the flg22-induced oxidative burst was independent from RBOHF orthologs suggesting that, compared to Arabidopsis, yet unidentified players are involved [64].

H2O2 was used to mimic the effect of oxidative stress caused by ROS generated inside the cell or in the apoplast upon other stresses such as biotic attack, salt stress, or impairment of photosynthesis [65]. However, ROS are also formed by the cell as intercellular messengers, e.g. as a response to other stresses, and even contribute to systemic Ca2+ signal propagation [66]. Application of H2O2 resulted in [Ca2+]cyt transients in barley and Arabidopsis, both in roots and leaves (Fig. 6; Fig. S7). Compared to salt and drought stress, the response to H2O2 appeared 15-20 seconds later and showed an extended duration of the [Ca2+]cyt transient for several minutes, often not returning to the baseline within the measurement period. It is known that ROS and Ca2+ signalling interact with each other in a way that elevation in [Ca2+]cyt induces ROS production and vice versa, thus extending the duration and amplitude of the signals [67, 68]. In the case of H2O2, a clear difference in the concentration dependency of the response could be observed between barley and Arabidopsis. This may indicate a higher sensitivity or responsiveness of barley to oxidative stress compared to Arabidopsis. However, the [Ca2+]cyt responses require that H2O2 penetrates the tissue, and it cannot be excluded that this is a decisive factor for the observed differences.

A growing barley leaf represents successive developmental zones with functionally and developmentally distinct cells: the mature zone at the tip with fully differentiated mature cells, the division zone at the base of the blade with dividing cells, and in between the elongation zone with expanding cells [39, 40]. Ca2+ signals analysed in different sections of leaves from five- and seven-day-old Hv-AEQcyt #18plants after application of NaCl, H2O2, or flg22 showed that there are quantitative differences in Ca2+ responses (Fig. 7; Fig. S8), implying a relevance of the developmental stage of the cells in the response to these stimuli. In response to NaCl, the strongest signal was detected at the base of the diffusion zone which then decreased progressively through the elongation to the mature zone, reaching the lowest intensity in the leaf tip. Conversely, in response to H2O2, the strongest increase in [Ca2+]cyt was obtained at the tip of the leaf of five-day-old plants, whereas in seven-day-old leaves, the strongest signals were obtained not only in the leaf tip but also at the base and decreased towards the centre from both regions (Fig. 7). The intensity of the signal in response to flg22 showed marginal variation along the leaf blade with only a slightly higher intensity in the middle zone of leaves of seven-day-old plants (Fig. 7). The observed differences provide evidence that the early stages of the Ca2+ signalling pathway in response to NaCl and H2O2 might differ in a developmental-stage dependent manner in barley leaves. This raises the question whether there is a degree of specificity in the Ca2+ signalling pathway in leaves related to the developmental stage of the tissues. Such cell type-specific Ca2+ patterns have also been observed in Arabidopsis, but so far only in roots [33]. Moreover, the quantitative differences in Ca2+ responses in barley may be due to a cell type-specific recruitment of the components involved upstream of the Ca2+ signal, such as stimuli sensors, signal transmission molecules, Ca2+ influx channels, and Ca2+ exporters, that are poorly understood in Arabidopsis and yet unidentified in barley.

La3+ has been widely used as a blocker of Ca2+ channels located at the plasma membrane [14, 69]. This inhibitor reduced all stress-induced [Ca2+]cyt transients, albeit with varying effectiveness (Fig. 8). In the most extreme case, La3+ almost completely abolished the [Ca2+]cyt response to mannitol in the root tips. These results unequivocally demonstrate that Ca2+ influx from the apoplast is crucially involved in the generation of Ca2+ signals in response to all examined stresses in barley. However, La3+ did not abolish the response completely, pointing to the additional involvement of internal Ca2+ stores. Such a co-operation of Ca2+ stores is in line with many studies on Arabidopsis and rice [14, 16, 31]. The different Ca2+ sources may act independently or in the same pathway. Possible mode of actions may consist in feed-forward loops, like Ca2+-induced Ca2+ release [21]. Such a signal amplification may be mediated by [Ca2+]cyt-activated Ca2+-permeable channels, like TPC1 [70].


Overall, this study showed that the bioluminescent Ca2+ reporter aequorin is a powerful tool to measure [Ca2+]cyt dynamics in barley. It further showed that Ca2+ signalling is involved in the early stages of responses to environmental cues in this species and that the Ca2+ signatures in response to NaCl, H2O2, mannitol, and flg22 are quite comparable to those in Arabidopsis. However, it also revealed notable differences in temporal kinetics and intensity of stress-mediated [Ca2+]cyt elevations. Moreover, differences in the concentration of stimuli required to induce such signals, have been observed. Such disparities between barley and Arabidopsis suggest a species specificity in Ca2+-dependent stress response mechanisms and may be indicative for the involvement of different molecular machineries in the generation of Ca2+ responses. Therefore, future investigations are necessary to identify the molecular identity of the components of these machineries. In that context, it is of great advantage that the genomic sequence of barley is available [71], enabling genetic approaches to investigate the components of the Ca2+ signalling toolbox in barley. The barley APOAEQUORIN lines described here can further assist in these investigations.


Vector construction and transformation of barley

For the generation of barley aequorin lines (Hv-AEQcyt) the coding region of APOAEQUORIN was amplified from the vector pBIN19-AEQ [12] using the forward primer 5´-ATGACCAGCGAACAATACTCAGTC-3´ and the reverse primer 5´- CGGTGGAGCTGTCCCCTAA-3´ containing XmaI restriction sites and cloned upstream of Zea mays ubiquitin-1 promoter (ZmUBI1) into the vector pUbi-AB (DNA Cloning Service, Hamburg, Germany [72]). The entire expression cassette was sub-cloned into the binary vector pLH7000 (DNA Cloning Service) via the SfiI restriction site. This construct was introduced in Agrobacterium tumefaciens strain AGL-1 [73] through electroporation (Gene Pulser Xcell Electroporation Systems; Bio-Rad). Agrobacterium-mediated gene transfer was performed with the barley wild type cultivar Golden Promise as described [74]. To confirm the functionality of aequorin, the luminescence of Hv-AEQcyt lines was analysed by discharging aequorin with 1 M CaCl2 in 10% ethanol in a plate luminometer (Mithras LB940, Berthold Technologies, Pforzheim, Germany) as described below.

Plant material and growth conditions

Transgenic Hv-AEQcyt barley plants (T3) homozygous for APOAEQUORIN as well as plants of a transgenic Arabidopsis Col-0 line expressing cytosolic APOAEQUORIN [12] were grown in pots filled with water-soaked vermiculite. Plants were cultivated under long-day conditions (16 h light, 20°C with a light intensity of 100-120 μmol m-2 s-1 and 8 h darkness, 18 °C; 65% rh) in climate-controlled growth cabinets. The APOAEQUORIN sequences in Arabidopsis and barley are identical.

Quantification of APOAEQUORIN transcript levels and aequorin immunodetection

For quantification of APOAEQUORIN transcript levels, mRNA of seven-day-old Hv-AEQcyt seedlings was isolated from leaves and roots using a Spectrum Plant Total RNA kit (Sigma-Aldrich, St. Louis, MO, United States) with on-column DNase I (Omega Bio-Tek, Norcross, GA, USA) treatment according to the manufacturer´s instructions. cDNA was synthesized from 1 μg of mRNA using random hexamer primers and M-MLV reverse transcriptase (Promega, Madison, WI, USA) according to the manufacturer´s protocol. Quantitative real-time PCR was carried out in a realplex4 MasterCycler system (Eppendorf, Hamburg, Germany) using the Power SYBR Green PCR master mix (Applied Biosystems, Foster City, CA, USA). For amplification of 120 bp of APOAEQUORIN, forward primer 5´-CAAGGCGTCCGATATTGTTATAAA-3´ and reverse primer 5´-TGGAATGAAATATGGTGTAGAAACTGA-3´ were used. The expression level was quantified using a cDNA dilution series and normalized to actin HvACTIN2 (AY145451.1) as constitutively expressed control.

For immunodetection of APOAEQUORIN, proteins were isolated from leaves and roots of five-day-old barley wild type and Hv-AEQcyt plants using a protein extraction buffer as previously described [75]. The proteins were separated on a 12% SDS-polyacrylamide gel and transferred to PVDF membrane (Thermo Scientific, Waltham, MA, USA). Immunodetection was performed using an antibody against aequorin (Abcam, Berlin, Germany) and an ECL detection system (Serva, Heidelberg, Germany) with an anti-rabbit secondary antibody coupled to horseradish peroxidase (Sigma-Aldrich).

Phenotypic analyses

Thousand grain weight was determined by weighing 100 grains of 4 independent plants of Hv-AEQcyt #18 and the wild type in duplicates and extrapolating by the factor of 10. Fresh weight, root length, and leaf blade length were determined of eight individual seedlings grown for three or five days on vermiculite under the same growth conditions as used for the experiments.

Aequorin reconstitution and luminescence measurements

Unless otherwise stated, 5 mm sections from the tip of the leaf and the primary root of three-day-old Hv-AEQcyt seedlings were used for [Ca2+]cyt measurements in barley, while entire shoots or roots of five-day-old seedlings were used for Arabidopsis. Tissues were reconstituted for 16 hours in the dark in 2.5 μM coelenterazine solution (Carl Roth, Karlsruhe, Germany). After reconstitution, the coelenterazine solution was replaced by in ddH2O, and tissues were allowed to recover for one hour in light before measurements. For inhibitor treatments, leaf or root tips of barley were incubated for one hour in 1 mM lanthanum chloride (LaCl3) in ddH2O after reconstitution. All measurements were performed in 96-well plates (Lumitrac 600, Greiner Bio-One, Kremsmünster, Austria) in a plate luminometer (Mithras LB940). Luminescence was detected for 90 seconds with an integration time of 1 sec to record the baseline before the injection of an equal volume of a 2-fold-concentrated solution of H2O2, NaCl, mannitol, or flg22. After injection, changes in luminescence were recorded for another 600 sec (H2O2, NaCl, mannitol) or 1200 sec (flg22). After injection of discharge solution (final concentration: 1 M CaCl2 in 10% ethanol) luminescence was recorded for another 300 sec with the same integration time. [Ca2+]cyt was calculated as described [76] with a background correction acquired from measurements of empty wells under the same conditions. To calculate Δ [Ca2+]cyt, the mean [Ca2+]cyt derived from 10 sec of baseline prior to treatment was subtracted from the maximum [Ca2+]cyt obtained after injection. All experiments were repeated at least twice with similar results.

For luminescence imaging, intact Hv-AEQcyt plants were mounted on a Petri dish using double faced adhesive tape and APOAEQUORIN was reconstituted by spraying leaves with 10 μM coelenterazine in 0.01% Tween 20 and subsequent incubation for six hours in the dark. Aequorin imaging was performed according to [15] using a high-resolution photon-counting camera system (HRPCS218; Photek, St Leonards on Sea, UK). Plants were placed in the dark box of the system, and photons were recorded in photon-counting mode with a frame rate of 200 ms. Treatment solutions were injected in the closed dark box via a tubing system 90 seconds after the beginning of the measurement. The remaining aequorin was discharged with 1 M CaCl2 in 10% ethanol. Ca2+-dependent light emission was analysed with the IFS32 software (Photek) by drawing defined regions of interest (ROIs) and normalized by calculating L/Lmax (luminescence counts per sec / total luminescence counts remaining) for each ROI. All experiments were repeated at least twice with similar results.

Statistical analysis

All experiments were repeated at least twice. The data on which the graphs and bar plots in figures are based are shown in the Additional Data Files 2-5. Statistical analyses were performed using Sigma Plot 13.0 (Systat Software).

Availability of data and materials

All data generated or analysed during this study are included in this published article and its supplementary information files.


[Ca2+]cyt :

cytosolic Ca2+ concentration

Δ[Ca2+]cyt :

amplitude of the [Ca2+]cyt increase


calcineurin B-like protein


CBL interacting protein kinase



Hv-AEQcyt :

barley ‘Golden promise’ line carrying apoequorin


inositol 1,4,5-trisphosphate


pathogen-associated molecular patterns


NADPH/respiratory burst oxidase


salt overly sensitive


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We thank Liane Freitag for excellent technical assistance and careful plant husbandry. We also thank Dr. Andras Bittner for careful proofreading of the manuscript.


Open Access funding enabled and organized by Projekt DEAL. This work was supported by the Deutsche Forschungsgemeinschaft (DFG, PE1500/7-1 to E.P. and GRK 2064 to M.G. and U.V.), the European Regional Development Fund (ZS/2016/04/78153 to E.P.), and the Agrochemisches Institut Piesteritz e.V. (to E.P.).

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M.G. and B.M. contributed to conceptualization, investigation (responsible for most experimental work), formal analysis, validation, visualization, and writing - original draft; J.I. and K.-H.K. contributed to resources (performed barley transformation), and review & editing; E.P. and U.C.V. contributed to conceptualization, funding acquisition, project administration, supervision, and writing - review & editing; F.C. contributed to conceptualization, supervision, visualization, and writing - original draft as well as review & editing. The authors read and approved the final manuscript.

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Correspondence to Edgar Peiter or Ute C. Vothknecht.

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Additional file 4. Table S3


Additional file 5. Table S4

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Giridhar, M., Meier, B., Imani, J. et al. Comparative analysis of stress-induced calcium signals in the crop species barley and the model plant Arabidopsis thaliana. BMC Plant Biol 22, 447 (2022).

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  • Aequorin
  • Arabidopsis thaliana
  • barley
  • Ca2+ signalling
  • Ca2+ signature
  • Hordeum vulgare
  • Drought stress
  • flagellin 22
  • Salt stress
  • Oxidative stress