Lukoki L, Marechal R, Otoul E. The wild ancestors of the cultivated beans V radiata and V mungo. Bulletin du Jardin Botanique National de Belgique. 1980;28:23–30.
Google Scholar
Arumuganathan K, Earle ED. Nuclear DNA content of some important plant species. Plant Mol Biol Report. 1991;9:208–18.
Article
CAS
Google Scholar
Anonymous. In: pulses revolution - from food to nutritional security Ministry of Agriculture & farmers welfare (DAC&FW). Krishi Bhavan: Government of India; 2019. p. 1.
Google Scholar
Souframanien J, Gopalakrishna T. A comparative analysis of genetic diversity in blackgram genotypes using RAPD and ISSR markers. Theor Appl Genet. 2004;109:1687–93.
Article
CAS
PubMed
Google Scholar
Blair MW, Hurtado N, Chavarro CM, Muñoz-Torres MC, Giraldo MC, Pedraza F, Tomkins J, Wing R. Gene based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMC series. BMC Plant Biol. 2011;11:50.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gupta SK, Gopalakrishna T. Genetic diversity analysis in blackgram (Vigna mungo (L.) Hepper) using AFLP and transferable microsatellite markers from azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi). Genome. 2009;52:120–9.
Article
CAS
PubMed
Google Scholar
Souframanien J, Gopalakrishna T. Cross-species amplification of microsatellite loci and diversity analysis in blackgram. J Food Legumes. 2009;22:11–7.
Google Scholar
Gupta S, Gupta DS, Anjum TK, Pratap A, Kumar J. Inheritance and molecular tagging of MYMIV resistance gene in blackgram (Vigna mungo L. Hepper). Euphytica. 2013;193:27–37.
Article
CAS
Google Scholar
Prasanthi L, Reddy BVB, Rani KR, Rajeswari T, Sivaprasad Y, Reddy KR. Screening of blackgram genotypes under artificially inoculated conditions and based on molecular markers for powdery mildew resistance. Legum Res. 2010;33:17–22.
Google Scholar
Souframanien J, Gopalakrishna T. ISSR and SCAR markers linked to the mungbean yellow mosaic virus (MYMV) resistance gene in blackgram [Vigna mungo (L.) Hepper]. Plant Breeding. 2006;125:619–22.
Article
CAS
Google Scholar
Chaitieng B, Kaga A, Tomooka N, Isemura T, Kuroda Y, Vaughan DA. Development of a blackgram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map. Theor Appl Genet. 2006;113:1261–9.
Article
CAS
PubMed
Google Scholar
Gupta SK, Souframanien J, Gopalakrishna T. Construction of a genetic linkage map of blackgram, Vigna mungo (L.) Hepper, based on molecular markers and comparative studies. Genome. 2008;51:628–37.
Article
CAS
PubMed
Google Scholar
Varshney RK, Nayak SN, May GD, Jackson SA. Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 2009;27:522–30.
Article
CAS
PubMed
Google Scholar
Li YC, Korol AB, Fahima T, Beiles A, Nevo E. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol. 2002;11:2453–65.
Article
CAS
PubMed
Google Scholar
Mammadov J, Aggarwal R, Buyyarapu R, Kumpatla S. SNP markers and their impact on plant breeding. Int J Plant Genomics. 2012. https://doi.org/10.1155/2012/728398.
Article
CAS
Google Scholar
Salem M, Vallejo RL, Leeds TD, Palti Y, Liu S, Sabbagh A, Rexroad CE III, Yao J. RNA-Seq identifies SNP markers for growth traits in rainbow trout. PLoS One. 2012;7:e36264.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rafalski A. Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol. 2002;5:94–100.
Article
CAS
PubMed
Google Scholar
Varshney RK, Graner A, Sorrells ME. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 2005;23:48–55.
Article
CAS
PubMed
Google Scholar
Liang X, Chen X, Hong Y, Liu H, Zhou G, Li S, Guo B. Utility of EST-derived SSR in cultivated peanut (Arachis hypogaea L.) and Arachis wild species. BMC Plant Biol. 2009;9:35.
Article
PubMed
PubMed Central
CAS
Google Scholar
Ohnishi Y, Tanaka T, Ozaki K, Yamada R, Suzuki H, Nakamura Y. A high-throughput SNP typing system for genome-wide association studies. J Hum Genet. 2001;46:471–7.
Article
CAS
PubMed
Google Scholar
Tsuchihashi Z, Dracopoli N. Progress in high throughput SNP genotyping methods. Pharmacogenomics J. 2002;2:103–10.
Article
CAS
PubMed
Google Scholar
Wu SB, Wirthensohn MG, Hunt P, Gibson JP, Sedgley M. High resolution melting analysis of almond SNPs derived from ESTs. Theor Appl Genet. 2008;118:1–4.
Article
CAS
PubMed
Google Scholar
Singh BB, Dixit GP, Katiyar PK. Vigna research in India (25 years of research achievements). IIPR, Kanpur: All India Coordinated Research Project on MULLaRP; 2010.
Google Scholar
Reddy KR, Singh DP. Inheritance of resistance to mung bean yellow mosaic virus. Madras Agric J. 1993;80:199–201.
Google Scholar
Dongre TK, Pawar SE, Thakare RG, Harwalkar MR. Identification of resistant sources to cowpea weevil (Callosobruchus maculatus (F.)) in Vigna sp. and inheritance of their resistance in blackgram (Vigna mungo var. mungo). J Stored Prod Res. 1996;32:201–4.
Article
Google Scholar
Souframanien J, Gopalakrishna T. Source for bruchid resistance and its inheritance in Trombay wild urd bean (Vigna mungo var. silvestris). J Food Legumes. 2007;20:19–21.
Google Scholar
Souframanien J, Gupta SK, Gopalakrishna Y. Identification of quantitative trait loci for bruchid (Callosobruchus maculatus) resistance in blackgram [Vigna mungo (L.) Hepper]. Euphytica. 2010;176:349–56.
Article
Google Scholar
Jhanwar S, Priya P, Garg R, Parida SK, Tyagi AK, Jain M. Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnol J. 2012;10:690–702.
Article
CAS
PubMed
Google Scholar
Krishnan SG, Waters DLE, Henry RJ. Australian wild Rice reveals pre-domestication origin of polymorphism deserts in Rice genome. PLoS One. 2014;9:e98843.
Article
CAS
Google Scholar
Du J, Wang S, He C, Zhou B, Ruan YL, Shou H. Identification of regulatory networks and hub genes controlling soybean seed set and size using RNA sequencing analysis. J Exp Bot. 2017;68:1955–72.
CAS
PubMed
PubMed Central
Google Scholar
Upadhyaya HD, Reddy LJ, Gowda CL, Singh S. Identification of diverse groundnut germplasm: sources of early maturity in a core collection. Field Crop Res. 2006;97:261–71.
Article
Google Scholar
Vatanparast M, Shetty P, Chopra R, Doyle JJ, Sathyanarayana N, Egan AN. Transcriptome sequencing and marker development in winged bean (Psophocarpus tetragonolobus; Leguminosae). Scientific Reports. 2016;6:29070. https://doi.org/10.1038/srep29070.
Article
CAS
PubMed
PubMed Central
Google Scholar
Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M. Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiol. 2011;156:1661–78.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang J, Liang S, Duan J, Wang J, Chen S, Cheng Z, Zhang Q, Liang X, Li Y. De novo assembly and characterisation of the transcriptome during seed development, and generation of genic-SSR markers in peanut (Arachis hypogaea L.). BMC Genomics. 2012;13:90–10.
Article
CAS
PubMed
PubMed Central
Google Scholar
Weber H, Borisjuk L, Wobus U. Molecular physiology of legume seed development. Annu Rev Plant Biol. 2005;56:253–79.
Article
CAS
PubMed
Google Scholar
Thompson R, Burstin J, Gallardo K. Post-genomics studies of developmental processes in legume seeds. Plant Physiol. 2009;151:1023–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Souframanien J, Reddy KS. De novo assembly, characterization of immature seed transcriptome and development of genic-SSR markers in blackgram [Vigna mungo (L.) Hepper]. PLoS One. 2015;10:e0128748.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ge Y, Li Y, Zhu YM, Bai X, Lv DK, Guo D, Ji W, Cai H. Global transcriptome profiling of wild soybean (Glycine soja) roots under NaHCO3 treatment. BMC Plant Biol. 2010;10:153.
Article
PubMed
PubMed Central
CAS
Google Scholar
Kim MY, Lee S, Van K, Kim TH, Jeong SC, Choi IY, Kim DS, Lee YS, Park D, Ma J, Kim WY, Kim BC, Park S, Lee KA, Kim DH, Kim KH, Shin JH, Jang YE, Kim KD, Liu WX, Chaisan T, Kang YJ, Lee YH, Moon JK, Schmutz J, Jackson SA, Bhak J, Lee SH. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc Natl Acad Sci USA. 2010;107:22032–7.
Article
CAS
PubMed
PubMed Central
Google Scholar
Libault M, Farmer A, Joshi T, Takahashi K, Langley RJ, Franklin LD, He J, Xu D, May G, Stacey G. An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants. Plant J. 2010;63(1):86–99.
CAS
PubMed
Google Scholar
Zhang H, Song BH. RNA-seq data comparisons of wild soybean genotypes in response to soybean cyst nematode (Heterodera glycines). Genomics Data. 2017;14:36–9.
Article
PubMed
PubMed Central
Google Scholar
Garg R, Patel RK, Tyagi AK, Jain M. De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Res. 2011;18:53–63.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hiremath PJ, Farmer A, Cannon SB, Woodward J, Kudapa H, Tuteja R, Kumar A, Bhanuprakash A, Mulaosmanovic B, Gujaria N, Krishnamurthy L, Gaur PM, Kavikishor PB, Shah T, Srinivasan R, Lohse M, Xiao Y, Town CD, Cook DR, May GD, Varshney RK. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol J. 2011;9:922–31.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hiroshi A. Changes in activities of the de novo and salvage pathways of pyrimidine nucleotide biosynthesis during germination of blackgram (Phaseolus mungo) seeds. Z Pflanzenphysiol. 1977;81:199–211.
Article
Google Scholar
Dutta S, Kumawat G, Singh BP, Gupta DK, Singh S, Dogra V, Gaikwad K, Sharma TR, Raje RS, Bandhopadhya TK, Datta S. Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh]. BMC Plant Biol. 2011;11:17.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chen H, Wang L, Wang S, Liu C, Blair MW, Cheng X. Transcriptome sequencing of mung bean (Vigna radiata L.) genes and the identification of EST-SSR markers. PLoS One. 2015;10:e0120273.
Article
PubMed
PubMed Central
CAS
Google Scholar
Chen H, Liu L, Wang L, Wang S, Somta P, Cheng X. Development and validation of EST-SSR markers from the transcriptome of adzuki bean (Vigna angularis). PLoS One. 2015;10:e0131939.
Article
PubMed
PubMed Central
CAS
Google Scholar
Yan L, Liu Z, Xu H, Zhang X, Zhao A, Liang F, Xin M, Peng H, Yao Y, Sun Q, Ni Z. Transcriptome analysis reveals potential mechanisms for different grain size between natural and resynthesized allohexaploid wheats with near-identical AABB genomes. BMC Plant Biol. 2018;18:28.
Article
PubMed
PubMed Central
CAS
Google Scholar
Zhang Z, Xie W, Zhao Y, Zhang J, Wang N, Ntakirutimana F, Yan J, Wang Y. EST-SSR marker development based on RNA-sequencing of E sibiricus and its application for phylogenetic relationships analysis of seventeen Elymus species. BMC Plant Biology. 2019;19:235.
Article
PubMed
PubMed Central
CAS
Google Scholar
Verma P, Shah N, Bhatia S. Development of an expressed gene catalogue and molecular markers from the de novo assembly of short sequence reads of the lentil (Lens culinaris Medik.) transcriptome. Plant Biotechnol J. 2013;11:894–905.
Article
CAS
PubMed
Google Scholar
Kaur S, Pembleton LW, Cogan NO, Savin KW, Leonforte T, Paull J. Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers. BMC Genomics. 2012;13:104.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kudapa H, Azam S, Sharpe AG, Taran B, Li R, Deonovic B, Cameron C, Farmer AD, Cannon SB, Varshney RK. Comprehensive transcriptome assembly of chickpea (Cicer arietinum L.) using sanger and next generation sequencing platforms: development and applications. PLoS One. 2014;9:e86039.
Article
PubMed
PubMed Central
CAS
Google Scholar
Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER. Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. BMC Genomics. 2006;7:246.
Article
PubMed
PubMed Central
CAS
Google Scholar
Graham MA, Silverstein KAT, Cannon SB, VandenBosch KA. Computational identification and characterization of novel genes from legumes. Plant Physiol. 2004;135:1179–97.
Article
CAS
PubMed
PubMed Central
Google Scholar
Roy SW, Penny D, Neafsey DE. Evolutionary conservation of UTR intron boundaries in Cryptococcus. Mol Bio Evol. 2007;24:1140–8.
Article
CAS
Google Scholar
Atkins C, Smith P. Ureide synthesis in legume nodules. Prokaryotic nitrogen fixation: a model system for the analysis of a biological process. UK: Horizon Scientific Press; 2000. p. 559–87.
Google Scholar
Gupta SK, Bansal R, Gopalakrishna T. Development and characterization of genic-SSR markers for mungbean (Vigna radiata (L.) Wilczek). Euphytica. 2014;195:245–58.
Article
CAS
Google Scholar
Cardle L, Ramsay L, Milbourne D, Macaulay M, Marshall D, Waugh R. Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics. 2000;156:847–54.
CAS
PubMed
PubMed Central
Google Scholar
Morgante M, Hanafey M, Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet. 2002;30:194–200.
Article
CAS
PubMed
Google Scholar
Toth G, Gaspari Z, Jurka J. Microsatellites in different eukaryotic genomes, survey and analysis. Genome Res. 2000;10:1967–81.
Article
Google Scholar
Wang Z, Fang B, Chen J, Zhang X, Luo Z, Huang L, Chen X, Li Y. De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of eSSR markers in sweet potato (Ipomoea batatas). BMC Genomics. 2010. https://doi.org/10.1186/1471-2164-11-726.
Article
CAS
PubMed
PubMed Central
Google Scholar
Choudhary S, Sethy NK, Shokeen B, Bhatia S. Development of chickpea EST-SSR markers and analysis of allelic variation across related species. Theor Appl Genet. 2009;118:591–608.
Article
CAS
PubMed
Google Scholar
Wakeley J. Substitution-rate variation among sites and the estimation of transition bias. Mol Biol Evol. 1994;11:436–42.
CAS
PubMed
Google Scholar
Kruglyak S, Durrett RT, Schug MD, Aquadro CF. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc Natl Acad Sci. 1998;95:10774–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liew M, Pryor R, Palais R, Meadows C, Erali M, Lyon E, Wittwer C. Genotyping of single-nucleotide polymorphisms by high resolution melting of small amplicons. Clin Chem. 2004;50(7):1156–64.
Article
CAS
PubMed
Google Scholar
Trifonov EN. Tuning function of tandemly repeating sequences: a molecular device for fast adaptation. In: Evolutionary theory and processes: Modern horizons; 2004. p. 115–38.
Chapter
Google Scholar
Gupta SK, Gopalakrishna T. Development of unigene-derived SSR markers in cowpea (Vigna unguiculata) and their transferability to other Vigna species. Genome. 2010;53:508–23.
Article
CAS
PubMed
Google Scholar
Chen H, Chen H, Hu L, Wang L, Wang S, Wang ML, Cheng X. Genetic diversity and a population structure analysis of accessions in the Chinese cowpea [Vigna unguiculata (L.) Walp.] germplasm collection. The Crop Journal. 2017;5:363–72.
Article
Google Scholar
Chen H, Wang L, Liu X, Hu L, Wang S, Cheng X. De novo transcriptomic analysis of cowpea (Vigna unguiculata L. Walp.) for genic SSR marker development. BMC genetics. 2017b;18(1):65.
Article
PubMed
PubMed Central
CAS
Google Scholar
Yadav CB, Bhareti P, Muthamilarasan M, Mukherjee M, Khan Y, Rathi P, Prasad M. Genome-wide SNP identification and characterization in two soybean cultivars with contrasting mungbean yellow mosaic India virus disease resistance traits. PLoS One. 2015;10:e0123897.
Article
PubMed
PubMed Central
CAS
Google Scholar
Van K, Kang YJ, Han KS, Lee YH, Gwag JG, Moon JK, Lee SH. Genome-wide SNP discovery in mungbean by Illumina HiSeq. Theor Appl Genet. 2013;126:2017–27.
Article
CAS
PubMed
Google Scholar
Sablok G, Luo C, Lee WS, Rahman F, Tatarinova TV, Harikrishna JA, Luo Z. Bioinformatic analysis of fruit-specific expressed sequence tag libraries of Diospyros kaki Thunb.: view at the transcriptome at different developmental stages. 3 Biotech. 2011;1:35–45.
Article
PubMed
PubMed Central
Google Scholar
DePristo MA, Banks E, Poplin RE, Garimella KV, Maguire JR, Hartl C, Philippakis AA, del Angel G, Rivas MA, Hanna M, McKenna A, Fennell TJ, Kernytsky AM, Sivachenko AY, Cibulskis K, Gabriel SB, Altshuler D, Daly MJ. A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet. 2011;43:491–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ching AD, Caldwell KS, Jung M, Dolan M, Smith O, Tingey S, Morgante M, Rafalski AJ. SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines. BMC Genet. 2002;3:19.
Article
PubMed
PubMed Central
Google Scholar
Liu Q, Guo Y, Li J, Long J, Zhang B, Shyr Y. Steps to ensure accuracy in genotype and SNP calling from Illumina sequencing data. BMC Genomics. 2012;13(Suppl 8):S8.
PubMed
PubMed Central
Google Scholar
Rosenberg MS, Subramanian S, Kumar S. Patterns of transitional mutation biases within and among mammalian genomes. Mol Biol Evol. 2003;20:988–93.
Article
CAS
PubMed
Google Scholar
Shen JC, Rideout WM, Jones PA. The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA. Nucleic Acids Res. 1994;22:972–6.
Article
CAS
PubMed
PubMed Central
Google Scholar
Han Y, Kang Y, Torres-Jerez I, Cheung F, Town CD, Zhao PX, Udvardi MK, Monteros MJ. Genome-wide SNP discovery in tetraploid alfalfa using 454 sequencing and high resolution melting analysis. BMC Genomics. 2011;12:350.
Article
CAS
PubMed Central
Google Scholar
De Koeyer D, Douglass K, Murphy A, Whitney S, Nolan L, Song Y, De Jong W. Application of high-resolution DNA melting for genotyping and variant scanning of diploid and autotetraploid potato. Mol Breed. 2010;25:67.
Article
CAS
Google Scholar
Chagné D, Gasic K, Crowhurst RN, Han Y, Bassett HC, Bowatte DR, Lawrence TJ, Rikkerink EH, Gardiner SE, Korban SS. Development of a set of SNP markers present in expressed genes of the apple. Genomics. 2008;92:353–8.
Article
PubMed
CAS
Google Scholar
Li X, Acharya A, Farmer AD, Crow JA, Bharti AK, Kramer RS, Wei Y, Han Y, Gou J, May GD, Monteros MJ, Brummer EC. Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing. BMC Genomics. 2012;13:568.
Article
CAS
PubMed
PubMed Central
Google Scholar
Santa Lucia J Jr. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor hermodynamics. ProcNatl Acad SciUSA. 1998;95:1460–5.
Article
CAS
Google Scholar
Gailing O, Vornam B, Leinemann L, Finkeldey R. Genetic and genomicapproaches to assess adaptive genetic variation in plants: forest trees asa model. Physiol Plant. 2009;137:509–19.
Article
CAS
PubMed
Google Scholar
Liu J, Li W, Ning Y, Shirsekar G, Wang X, Dai L, Wang Z, Liu W, Wang G. The U-box E3 ligase SPL11/PUB13 is a convergence point of defense and flowering signaling in plants. Plant Physiol. 2012;160:112.
Google Scholar
Herr AJ, Molnàr A, Jones A, Baulcombe DC. Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. Proc Natl Acad Sci U S A. 2006;103:14994–5001.
Article
CAS
PubMed
PubMed Central
Google Scholar
Schuler MA. The role of cytochrome P450 monooxygenases in plant-insect interactions. Plant Physiol. 1996;112:1411–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Hofius D, Maier AT, Dietrich C, Jungkunz I, Bornke F, Maiss E, Sonnewald U. Capsid protein-mediated recruitment of host DnaJ-like proteins is required for potato virus Y infection in tobacco plants. J Virol. 2007;81:11870–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
Soellick T, Uhrig JF, Bucher GL, Kellmann JW, Schreier PH. The movement protein NSm of tomato spotted wilt tospovirus (TSWV): RNA binding, interaction with the TSWV N protein, and identification of interacting plant proteins. Proc Natl Acad Sci U S A. 2000;97:2373–8.
Article
CAS
PubMed
PubMed Central
Google Scholar
Meyer K, Leube MP, Grill E. A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana. Science. 1994;264:1452–5.
Article
CAS
PubMed
Google Scholar
Begue H, Mounier A, Rosnoblet C, Wendehenne D. Toward the understanding of the role of CDC48, a major component of the protein quality control, in plant immunity. Plant Sci. 2018;279.
Bolger AM, Lohse M, Usadel B. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatic. 2014;30:2114–20.
Article
CAS
PubMed
PubMed Central
Google Scholar
Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics. 2005;21:3674–6.
Article
CAS
PubMed
Google Scholar
Kanehisa M, Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000;28:27–30.
Article
CAS
PubMed
PubMed Central
Google Scholar
Martins WS, Lucas DC, Neves KF, Bertioli DJ. WebSat—a web software for microsatellite marker development. Bioinformation. 2009;3:282–3.
Article
PubMed
PubMed Central
Google Scholar
Dellaporta SL, Wood J, Hicks JB. A plant DNA minipreparation: version II. Plant Mol Biol Rep. 1983;1:19–21.
Article
CAS
Google Scholar
Anderson JA, ChurchillGA AJE, Tanksley SD, Sorrells ME. Optimizing parental selection for genetic linkage maps. Genome. 1993;36:181–6.
Article
CAS
PubMed
Google Scholar
Rohlf FJ. NTSYS-Pc: Numerical taxonomy and multivariate analysis system, version 2.0. Setauket: Exeter publications; 1998.
Google Scholar
Pfaffl MW, Horgan GW, Dempfle L. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res. 2002;30:e36.
Article
PubMed
PubMed Central
Google Scholar
Koressaar T, Remm M. Enhancements and modifications of primer design program Primer3. Bioinformatics. 2007;23:1289–91.
Article
CAS
PubMed
Google Scholar
Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, Remm M, Rozen SG. Primer3 - new capabilities and interfaces. Nucleic Acids Res. 2012;40:115.
Article
CAS
Google Scholar
Zhang Y. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics. 2008;9:40.
Article
PubMed
PubMed Central
CAS
Google Scholar