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Table 1 Number of alleles per locus and polymorphic information content (PIC) value of genic-SSR markers used for studying allelic variation among blackgram genotypes

From: Transcriptome sequencing, de novo assembly, characterisation of wild accession of blackgram (Vigna mungo var. silvestris) as a rich resource for development of molecular markers and validation of SNPs by high resolution melting (HRM) analysis

Genic-SSR primer code No. of alleles /locus Polymorphic information content (PIC) Putative function
TWSSR-1 2 0.28 Protein ABCI7
TWSSR-4 2 0.21 transcription factor bHLH143-like
TWSSR-8 3 0.76 CBL-interacting serine/threonine-protein kinase 8
TWSSR-9 3 0.62 Vigna angularis var. angularis DNA, chromosome 11
TWSSR-10 5 0.67 transcription factor TCP9
TWSSR-11 2 0.53 U-box domain-containing protein 4
TWSSR-12 4 0.49 Vigna radiata var. radiata uncharacterized LOC106765753
TWSSR-13 2 0.14 sugar carrier protein C
TWSSR-14 3 0.34 Vigna angularis var. angularis DNA, chromosome 1
TWSSR-15 3 0.60 vacuolar sorting receptor
TWSSR-16 4 0.50 Vigna radiata var. radiata uncharacterized LOC106778819
TWSSR-19 3 0.67 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
TWSSR-20 4 0.72 transcription factor 25
TWSSR-24 1 0.14 glycerol-3-phosphate transporter 4
TWSSR-31 2 0.58 Lupinus angustifolius cultivar Tanjil chromosome LG-11
TWSSR-34 2 0.59 60S ribosomal protein L29–1
TWSSR-47 3 0.48 hypothetical protein (PHAVU_001G023500g)
TWSSR-48 2 0.50 Human DNA sequence from clone RP11-164 K15 on chromosome 22
TWSSR-57 2 0.48 vesicle-associated membrane protein 722-like
TWSSR-59 3 0.57 Vigna angularis var. angularis DNA, chromosome 4
TWSSR-61 3 0.85 glycine-rich domain-containing protein 1
TWSSR-62 4 0.69 transcription initiation factor IIF subunit beta
TWSSR-66 3 0.52 Vigna radiata var. radiata uncharacterized LOC106765616
TWSSR-68 3 0.79 UPF0496 protein At2g18630-like
TWSSR-72 2 0.46 Vigna angularis uncharacterized LOC108326918
TWSSR-74 4 0.77 ATP-dependent RNA helicase eIF4A
TWSSR-76 1 0.65 activator of 90 kDa heat shock protein ATPase homolog
TWSSR-81 1 0.36 trafficking protein particle complex subunit 6B
TWSSR-82 3 0.69 Vigna angularis var. angularis DNA, chromosome 8
TWSSR-86 3 0.54 serine/threonine-protein kinase-like protein At3g51990
TWSSR-87 3 0.46 histidine kinase 4
Average 3 0.54