FAOSTAT. © FAO. Production quantities by country. 2014. faostat3.fao.org.
Shigyo, Kik. Onion. In: Prohens J, Nuez F, editors. Vegetables II: Fabaceae, Liliaceae, Umbelliferae and Solanaceae (Handbook of plant breeding). New York: Springer; 2008. p. 121–59.
Chapter
Google Scholar
Broekgaarden C, Snoeren TAL, Dicke M, Vosman B. Exploiting natural variation to identify insect-resistance genes. Plant Biotechnol J. 2011;9:819–25. doi:10.1111/j.1467-7652.2011.00635.x.
Hajjar R, Hodgkin T. The use of wild relatives in crop improvement: a survey of developments over the last 20 years. Euphytica. 2007;156:1–13. doi:10.1007/s10681-007-9363-0.
Kofoet A, Kik C, Wietsma WA, de Vries JN. Inheritance of resistance to downy mildew from Allium roylei Stearn in the backcross Allium cepa x (A. roylei x A. cepa). Plant Breed. 1990;105:144–9.
Article
Google Scholar
Scholten OE, Van Heusden AW, Khrustaleva LI, Burger-Meijer K, Mank RA, Antonise RGC, Harrewijn JL, Van haecke W, Oost EH, Peters RJ, Kik C. The long and winding road leading to the succesful introgresssion of downy mildew resistance into onion. Euphytica. 2007;156:345–53. doi:10.1007/s10681-007-9383-9.
Article
Google Scholar
De Vries JN, Wietsma WA, de Vries T. Introgression of leaf blight resistance from Allium roylei Stearn into onion (A. cepa L.). Euph. 1992;62:127–33.
Article
Google Scholar
Walters TW, Ellerbrock LA, Van der Heide JJ, Lorbeer JW, LoParco DP. Field and greenhouse procedures to evaluate onions for Botrytis leaf blight resistance. HortSci. 1996;31:436–8.
Google Scholar
Galván GA, Wietsma WA, Putrasemedja S, Permadi AH, Kik C. Screening for resistance to Colletotrichum gloeosporioides in Allium cepa and its wild relatives. Euphytica. 1997;95:173–8.
Article
Google Scholar
Hyde PT, Leckie BM, Carpenter SCD, Lorbeer JW, Hoepting CA, Ullrich MR, Mutschler MA. Evaluation of onion (Allium cepa L.) lines and hybrids possessing Bs1 for resistance against multiple isolates of Botrytis squamosa. Crop Sci. 2015;55:136–45. doi:10.2135/cropsci2014.03.0255 .
Article
CAS
Google Scholar
Bergquist RR, Lorbeer JW. Reaction of Allium spp and Allium cepa to Botryiotinia (Botrytis) squamosa. Plant Dis Rep. 1971;55(5):394–8.
Google Scholar
Currah L, Maude RB. Laboratory tests for leaf resistance to Botrytis squamosa in onions. Ann Appl Biol. 1984;105:277–83.
Article
Google Scholar
Holz G, Knox-Davies PS. Resistance of onion selections to Fusarium oxysporum f. sp. cepae. Phytophylactica. 1974;6:153–6.
Google Scholar
Ludwig AC, Hubstenberger JF, Philips GC, Soutward GM. Screening of Allium tester lines in vitro with Pyrenochaeta terrestris filtrates. HortSci. 1992;27:166–8.
Google Scholar
Netzer D, Rabinowitch HD, Weintal C. Greenhouse technique to evaluate onion resistance to pink root. Euphytica. 1985;34:385–91.
Article
Google Scholar
Galván GA, Koning-Boucoiran CFS, Koopman WJM, Burger-Meijer K, González PH, Waalwijk C, Kik C, Scholten OE. Genetic variation among Fusarium isolates from onion, and resistance to Fusarium basal rot in related Allium species. Eur J Plant Pathol. 2008;121:499–512. doi:10.1007/s10658-008-9270-9..
Article
Google Scholar
Van Raamsdonk LWD, Ensink W, Van Heusden AW, Vrielink-van Ginkel M, Kik C. Biodiversity assessment based on cpDNA and crossability analysis in selected species of Allium subgenus Rhizirideum. Theor Appl Genet. 2003;107:1048–58.
Article
PubMed
Google Scholar
Labani RM, Elkington TT. Nuclear DNA variation in the genus Allium L. (Liliaceae). Heredity. 1987;59:119–28.
Article
Google Scholar
Van der Meer QP, De Vries JN. An interspeciific cross between Allium roylei Stearn and Allium cepa L and its backcross to Allium cepa. Euphytica. 1990;47:29–31.
Article
Google Scholar
Van Heusden AW, Van Ooijen JW, Vrielink-Van Ginkel R, Verbeek W, Wietsma WA, Kik C. A genetic map of an interspecific cross in Allium based on amplified fragment length polymorphism (AFLP™) markers. Theor Appl Genet. 2000a;100:118–26.
Van Heusden AW, Shigyo M, Tashiro Y, Vrielink-van Ginkel R, Kik C. AFLP linkage group assignment to chromosomes of Allium cepa L. via monosomic addition lines. Theor Appl Genet. 2000b;100:480–6.
Khrustaleva LI, Kik C. Cytogenetical studies in the bridge cross Allium cepa x (A. fistulosum x A. roylei). Theor Appl Genet. 1998;96:8–14.
Article
Google Scholar
Khrustaleva LI, Kik C. Introgression of Allium fistulosum into A. cepa mediated by A. roylei. Theor Appl Genet. 2000;100:17–26.
Article
Google Scholar
Duangjit J, Bohanec B, Chan AP, Town CD, Havey MJ. Transcriptome sequencing to produce SNP-based genetic maps of onion. Theor Appl Genet. 2013;126:2093–101. doi:10.1007/s00122-013-2121-x.
Tsukazaki H, Yaguchi S, Sato S, Hirakawa H, Katayose Y, Kanamori H, Kurita K, Itoh T, Kumagai M, Mizuno S, Hamada M, Fukuoka H, Yamashita K-I, McCallum JA, Shigyo M, Wak T. Development of transcriptome shotgun assembly-derived markers in bunching onion (Allium fistulosum). Mol Breed. 2015;35:55. doi: 10.1007/s11032-015-0265-x.
Article
Google Scholar
Aramuganathan K, Earle ED. Nuclear DNA content of some important plant species. Plant Mol Bio Rep. 1991;9:208–18.
Article
Google Scholar
Khrustaleva LI, De Melo PE, Van Heusden AW, Kik C. The integration of recombination and physical maps in a large-genome monocot using haploir genome analysis in a trihybrid Allium population. Genetics. 2005;169:1673–85. doi:10.1534/genetics.104.038687.
Article
CAS
PubMed
PubMed Central
Google Scholar
Nijveen H, Van Kaauwen M, Esselink DG, Hoegen B, Vosman B. QualitySNPng: a user-friendly SNP detection and visualization tool. Nucleic Acids Res. 2013;41:W587–90. doi:10.1093/nar/gkt333.
Article
PubMed
PubMed Central
Google Scholar
Tang J, Vosman B, Voorrips RE, Van der Linden CG, Leunissen JAM. QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species. BMC Bioinformatics. 2006;7:438. doi:10.1186/1471-2105-7-438.
Article
PubMed
PubMed Central
Google Scholar
Shahin A, Van Kaauwen M, Esselink D, Bargsten JW, Van Tuyl JM, Visser RGF, Arens P. Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa. BMC Genomics. 2012;13:640. http://www.biomedcentral.com/1471-2164/13/640. doi:10.1186/1471-2164-13-640.
Fulton TM, Chunwongse J, Tanksley SD. Microprep protocol for extraction of DNA from tomato and other herbaceous plants. Plant Mol Biol Report. 1995;13:207–9.
Article
CAS
Google Scholar
Van Ooijen JW. JoinMap ® 4, Software for the calculation of genetic linkage maps in experimental populations. Wageningen: Kyazma BV; 2006.
Google Scholar
Voorrips RE. MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered. 2002;93:77–8.
Article
CAS
PubMed
Google Scholar
McCullagh R, Nelder JA. Generalized Linear Models. In: Monographs on Statistics and Applied Probability 37. 2nd ed. London: Chapman and Hall; 1989. p. 511.
Google Scholar
Cox DR, Hinkley DV. Theoretical Statistics. London: Chapman and Hall; 1979. p. 528.
Google Scholar
Van Ooijen JW. Map QTL ® 6, Software for the mapping of quantitative trait loci in experimental populations of diploid species. Wageningen: Kyazma BV; 2009.
Google Scholar
Ganal MW, Altmann T, Röder MS. SNP identification in crop plants. Curr Opin Plant Biol. 2009;12:211–7. doi:10.1016/j.pbi.2008.12.009.
Article
CAS
PubMed
Google Scholar
Varshney RK, Nayak SN, May GD, Jackson SA. Next generation sequencing technologies and their implications for crop genetics and breeding. Trends Biotechnol. 2009;27:522–30. doi: 10.1016/j.tibtech.2009.05.006.
McCallum J, Leite D, Pither-Joyce M, Havey MJ. Expressed sequence markers for genetic analysis of bulb onion (Allium cepa). Theor Appl Genet. 2001;103:979–91. doi:10.1007/s001220100630.
Baldwin S, Pither-Joyce M, Wright K, Chen L, McCallum J. Development of robust genomic simple sequence repeat markers for estimation of genetic diversity within and among bulb onion (Allium cepa L.) population. Mol Breed. 2012a;30:1401–11. doi:10.1007/s11032-012-9727-6.
Baldwin S, Revanna R, Thomson S, Pither-Joyce M, Wright K, Crowhurst R, Fiers M, Chen L, MacKnight R, McCallum J. A toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.). BMC Genomics. 2012b;13:637. doi:10.1186/1471-2164-13-637.
Martin WJ, McCallum J, Shigyo M, Jakse J, Kuhl JC, Yamane N, Pither-Joyce M, Gokce AF, Sink KC, Town CD, Havey MJ. Genetic mapping of expressed sequences in onion and in silico comparisons with rice show scant colinearity. Mol Gen Genomics. 2005;274:197–204. doi:10.1007/s00438-005-0007-6.
Article
CAS
Google Scholar
Viquez-Zamora M, Vosman B, van de Geest H, Bovy A, Visser R, Finkers R, Van Heusden A. Tomato breeding in the genomics era: insights from a SNP array. BMC Genomics. 2013;14:354. doi:10.1186/1471-2164-14-354.
McCallum J, Baldwin S, Shigyo M, Deng Y, Van Heusden AW, Pither-Joyce M, Kenel F. AlliumMap-A comparative genomics resource for cultivated Allium vegetables. BMC Genomics. 2012;13:168. doi:10.1186/1471-2164-13-168.
Finkers R, Van Workum W, Van Kaauwen M, Huits H, Jungerius A, Vosman B, Scholten OE. A de novo assembly for the 16GB Allium cepa genome, tears of joy. San Diego: Pant & Animal Genome XXIII; 2015. https://pag.confex.com/pag/xxiii/webprogram/Paper17794.html.
Google Scholar
De Melo PE. The root systems of onion and Allium fistulosum in the context of organic farming: a breeding approach. The Netherlands: PhD Thesis, Wageningen University; 2003. p. 127.
Google Scholar
Galván GA, Kuyper TW, Burger K, Keizer LCP, Hoekstra RF, Kik C, Scholten OE. Genetic analysis of the interaction between Allium species and arbuscular mycorrhizal fungi. Theor Appl Genet. 2011;122:947–60. doi:10.1007/s00122-010-1501-8.
Article
PubMed
Google Scholar
Chani E, Ashkenazi V, Hillel J, Veilleux RE. Microsatellite marker analysis of an anther- derived potato family: skewed segregation and gene-centromere mapping. Genome. 2002;45:236–42. doi:10.1139/G01-140.
Van der Valk P, De Vries SE, Everink JT, Verstappen F, De Vries JN. Pre- and post-fertilization barriers to backcrossing the interspecific hybrid between Allium fistulosum L. and A. cepa with A. cepa. Euph. 1991;53:201–9.
Article
Google Scholar
Ulloa-G M, Corgan JN, Dunford M. Evidence for nuclear-cytoplasmic incompatibility between Allium fistulosum and A. cepa. Theor Appl Genet. 1995;90:746–54.
Article
CAS
PubMed
Google Scholar