Expression of B-class MADS-box genes in response to variations in photoperiod is associated with chasmogamous and cleistogamous flower development in Viola philippica
© The Author(s). 2016
Received: 23 February 2016
Accepted: 15 June 2016
Published: 7 July 2016
Some plants develop a breeding system that produces both chasmogamous (CH) and cleistogamous (CL) flowers. However, the underlying molecular mechanism remains elusive.
In the present study, we observed that Viola philippica develops CH flowers with short daylight, whereas an extended photoperiod induces the formation of intermediate CL and CL flowers. In response to long daylight, the respective number and size of petals and stamens was lower and smaller than those of normally developed CH flowers, and a minimum of 14-h light induced complete CL flowers that had no petals but developed two stamens of reduced fertility. The floral ABC model indicates that B-class MADS-box genes largely influence the development of the affected two-whorl floral organs; therefore, we focused on characterizing these genes in V. philippica to understand this particular developmental transition. Three such genes were isolated and respectively designated as VpTM6-1, VpTM6-2, and VpPI. These were differentially expressed during floral development (particularly in petals and stamens) and the highest level of expression was observed in CH flowers; significantly low levels were detected in intermediate CL flowers, and the lowest level in CL flowers. The observed variations in the levels of expression after floral induction and organogenesis apparently occurred in response to variations in photoperiod.
Therefore, inhibition of the development of petals and stamens might be due to the downregulation of B-class MADS-box gene expression by long daylight, thereby inducing the generation of CL flowers. Our work contributes to the understanding of the adaptive evolutionary formation of dimorphic flowers in plants.
Flowers are typically composed of four organ types: sepals, petals, stamens, and carpels, which run from the outside of the flower to the center. The ABC model of flower development explains how three major function class genes (A-, B-, and C-class) specify the identity of the four floral organ types. A-class alone controls sepals, A-class in combination with B-class controls petals, B-class in combination with C-class controls stamens, and C-class alone controls carpels [1, 2]. A pair of MADS-box genes, APETALA3 (AP3) and PISTILLATA (PI) in Arabidopsis thaliana, and DEFICIENS (DEF) and GLOBOSA (GLO) in Antirrhinum majus, encodes B-function activity [3–6]. Mutations in either the AP3/DEF or PI/GLO genes results in similar phenotypic variations, wherein petals are transformed into sepals, and stamens into carpels [7–9]. The B-class lineages apparently underwent duplications and subsequent functional divergence in some core eudicots, possibly playing a role in the diversification of floral morphology during evolution [10–16]. For example, in Solanaceae and Leguminosae, the PI lineage duplicated into two GLO-like genes (GLO1 and GLO2), and the AP3 lineage underwent a duplication event at the base of the core eudicots, giving rise to two AP3-like lineages called the euAP3 and paleoAP3 genes [14–20]. The euAP3 genes include AP3/DEF, and the paleoAP3 type genes were named TOMATO MADS BOX GENE 6 (TM6) genes, after the first isolated member from Solanum lycopersicum . Although these paralogous genes are partially redundant, they have largely contributed to the development of stamens and petals. Interestingly, the TM6 lineage was subsequently lost in Arabidopsis and Antirrhinum . In contrast, the AP3 lineage was lost in papaya, which now only contains TM6 . These results indicate that it is possible to retain either or both of the AP3/TM6 paralogous pair and still produce flowers .
B-class MADS-box genes are not only involved in the specification of organ identity of petals and stamens, but also in the control of organ maturation. Knocking down AP3/PI at intermediate stages (stages 8–10) in Arabidopsis flowers induces petal-to-sepal transformations that gradually occur in consecutive buds. However, although stamens in these flowers retain their identity, they become increasingly underdeveloped and do not dehisce pollen . Independent petal loss within the buttercup family (Ranunculaceae) is strongly associated with decreased or eliminated expression of a single floral organ identity gene, AP3-3 . In rice, the B-class MADS-box gene, SUPERWOMAN1 (SPW1), specifies the identities of lodicules (equivalent to petals) and stamens. This was supported by the observation in the mutant of this gene, superwoman1-cleistogamy (spw1-cls), of normal stamens, where lodicules were transformed homeotically to lodicule-glume mosaic organs, thereby engendering cleistogamy . The phenotypic effect observed in the downregulation of Medicago truncatula TM6 (MtTM6) activity involved a change in petal shape, as well as some stamens differentiating into filaments and anthers failing to produce pollen grains . Furthermore, severely downregulating either Physalis floridana GLO2 (PFGLO2) or Physalis floridana TM6 (PFTM6) only results in poor pollen maturation [15, 16].
Several plants, including most species in the genus Viola within the family Violaceae are dimorphic cleistogamy plants capable of producing both open potential outcross and closed selfing flowers . Two examples are such as Viola odorata [28, 29] and V. pubescens . The open flowers are also called chasmogamous (CH) flowers, while the closed flowers called cleistogamous (CL) flowers. CL flowers may be energetically less costly to produce, resulting in more resources available for seed production and disruption of locally adapted gene complexes. On the other hand, CH flowers produce genetically variable progeny favored in spatially or temporally heterogeneous habitats [31–33]. Therefore, the evolution of dimorphic flowers at a single event exhibits the highest fitness when each flower type is produced in the environment for which it is best suited . Compared to CH flowers, CL petals are undeveloped and functional stamens become smaller and decreased in number. Moreover, V. odorata CH flowers are formed in response to short daylight, whereas CL flowers emerge in response to long daylight [28, 29]. In V. pubescens, orthologous genes for gibberellins 20 oxidase (VGA20ox) and gibberellins 3 oxidase (VGA3ox) are upregulated in CH flowers compared to that in CL flowers, thereby indicating a role for gibberellins (GA) in the differential production of flower types . However, the molecular mechanisms underlying this developmental transition are largely unknown in Viola. In the present study, we revealed the variations in the development of petals and stamens, which are the major affected floral organs in the formation of dimorphic flowers in V. philippica under different photoperiods. Furthermore, we investigated the potential role of B-class MADS-box genes in the development of the CH-CL breeding system. Three B-class MADS-box genes were cloned and designated as VpTM6-1, VpTM6-2, and VpPI. We determined that the differential expression of these genes during late floral development under the different photoperiods was correlated to the development of CH and CL flowers, thus providing novel insights into the development and evolution of dimorphic flowers in plants.
Different types of floral morphology in V. philippica
Photoperiods affect flower development in V. philippica
Under natural conditions, V. philippica produced complete CH flowers in the early spring and a mixture of CH and inCL flowers in late spring and late autumn, whereas complete CL flowers developed in the summer and early autumn, suggesting that dimorphic flower development in V. philippica might be regulated by photoperiods. We thus set five photoperiods (8-, 10-, 12-, 14-, and 16-h daylight) to test this assumption. Results showed that three types of flowers developed under these conditions. Complete CL flowers were formed under long-day lights (14- and 16-h daylight), and CH flowers uniquely developed in 8-h daylight. At 10–12-h daylight, both CH and inCL flowers simultaneously developed and > 90 % of the floral buds were CH flowers under a photoperiod of 10-h daylight. The CH/inCL + CLratio significantly decreased with longer photoperiods (Fig. 1l), indicating that CL flower development was induced by long-day light. Therefore, different photoperiods may affect the development of petals and stamens, thus regulating the formation of different types of flower morphology in V. philippica. To further understand this formation, we next examined the floral organ initiation process.
Organ initiation and development of different flower types in V. philippica
Isolation and sequencing analysis of B-class MADS-box genes in V. philippica
Expression of VpTM6 and VpPI during floral induction and organogenesis
Were the poorly developed or undeveloped petals and stamens of inCL and CL flowers in V. philippica related to variations in the expression of B-class MADS-box genes? To answer this question, we first examined the spatial and temporal patterns of expression during floral organogenesis and development of each flower type using in situ hybridization. Since the sequences of VpTM6-1 and VpTM6-2 were highly similar, a probe designed from VpTM6-2 was used in in situ hybridization to detect the expression of these two paralogs (designated as VpTM6). Results showed that VpTM6 and VpPI were continuously expressed from early stage (the second stage) to the later stage (the fifth stage) of floral organogenesis and development. At the floral organogenesis stage, VpTM6 was not only expressed in the primordia that normally developed into petals, stamens and pistils in CH, inCL, and CL flowers, but also in the primordia that either generated poorly developed petals and stamens or were retarded (Additional file 4: Figure S2a–l). In addition, in the later development stage of floral buds, VpTM6 was not only expressed in the developed petals and stamens in CH, inCL, and CL flowers, but also in the poorly developed or undeveloped petals and stamens of inCL and CL flowers. VpPI shared a similar expression domain as VpTM6 during floral organogenesis and development of CH, inCL, and CL flowers (Additional file 4: Figure S2m–x). Sense probes did not show any hybridization signals (Additional file 4: Figure S2y). We expected to observe distinct differences in the levels of expression of these genes between the fully developed and poorly or undeveloped floral organs in correlation to the three different types of flowers. However, no obvious difference in the spatial and temporal patterns of B-class gene expression was observed during floral organogenesis and development under any test conditions. The reason underlying these unexpected observations may be attributable to the decreased suitability of an in situ hybridization technique for quantification. Therefore, we investigated the expression of VpTM6-1, VpTM6-2, and VpPI using qRT-PCR.
Late floral expression of VpTM6 and VpPI in response to various photoperiods
To investigate further, we examined the expression levels of VpTM6-1, VpTM6-2, and VpPI in floral organs of mature flowers (Fig. 5d–f). The floral organs, including sepals, petals, stamens, and pistils, corresponding to different photoperiods, were collected from CH, inCL, and CL flowers. No expression of VpTM6-1 (Fig. 5d), VpTM6-2 (Fig. 5e), and VpPI (Fig. 5f) was detected in the sepals of all flower type, and expressed at a relatively low level in all the pistils. In contrast, these were highly expressed in the petals and stamens of all flowers (Fig. 5d–f). We also observed that the level of expression of VpTM6-1, VpTM6-2, and VpPI in the stamens and petals of the CH flowers were much higher than in the corresponding organs of inCL and CL flowers (Fig. 5d–f). In particular, the level of expression of these genes significantly decreased in poorly developed stamens and petals of inCL flowers (Fig. 5d–f).
These observations indicated that the significant decrease in the expression of B-class MADS-box genes after floral organogenesis was induced by photoperiod extension, playing an essential role in the formation of CL flowers.
Protein-protein interactions between VpTM6s and VpPI
To distinguish the divergence of VpTM6-1 and VpTM6-2, we investigated protein-protein interactions (PPI) among the three B-class MADS-domain proteins using a yeast GAL4 two-hybrid system. Both activating His3 and LacZ reporters respectively enabling cell growth of the transformed yeast and the generation of the blue coloration in the non-lethal ß-galactosidase assay were used to demonstrate PPIs. No toxicity and self-activation of these proteins in yeast were observed, and a dramatic difference in cell growth and ß-galactosidase activity in yeast (Additional file 5: Figure S3) suggested that VpTM6-1 interacted strongly with VpPI in yeast, whereas the interaction between VpTM6-2 and VpPI was very weak, further implying a dramatic difference of transcriptional activity of the two heterodimmers. These results suggest functional divergence of the two VpTM6 paralogs. Nonetheless, no homodimerization of these B-class MADS-domain proteins was observed (Additional file 5: Figure S3).
Some plants produce both CH and CL flowers in different ecological conditions during the growth cycle. Extensive studies have focused on how various ecological factors, including water, light intensity, photoperiod, soil fertility, and temperature could affect the CH-CL mixed breeding system [30, 37–39]. The general conclusion is that dimorphic flower development might be the result of adaptive evolution. The present study investigated dimorphic flower development under different photoperiods in V. philippica, including its underlying molecular mechanisms.
Dimorphic flower development and photoperiod regulation
The development of floral organs could be inhibited in nature; however, during the early developmental stage of flowers, all floral organ primordia are generally formed. For example, retardation or arrest of some floral organs after initiation occurs in most unisexual plants. Dioecious plants (such as white campion and Sorrel) and monoecious species (such as cucumber and London plant tree) all go through a hermaphroditic stage early in flower development, followed by differential abortion or arrest of sex organs, which can occur at various stages [40–43]. This phenomenon has also been observed in dimorphic cleistogamy plants. CL flowers of Lamium amplexicaule exhibit the least number of modifications, and no significant morphological differences are observed until pollen meiosis occurs compared to its CH flowers . In the present study, no morphological differences at floral induction and organogenesis were detected in V. philippica. However, at later flower development stages, CH flowers featured normal flower structure, while petal and partial stamen development was retarded in CL flowers. In most cases, CL flowers had no petals and only a few fertile anthers. The arrest of floral organs is ubiquitous in nature for a variety of reasons [27, 28, 30, 40–43]. Similar to observations in temperate plant species [27, 34], the phenology of the two flower types in V. philippica is mainly determined by photoperiod. This phenomenon was also observed in V. odorata, in which CH flowers were formed in response to 11-h or less of daylight, CL flowers developed in response to 14-h or more of daylight, and inCL were produced during transitional periods . Therefore, we confirmed that floral organ morphologic differentiation in V. philippica is determined during organogenesis after floral induction, and is influenced by photoperiod in dimorphic flower plants.
Floral expression of VpTM6 and VpPI in response to variations in photoperiod
Genome-wide gene expression patterns from cross-species microarray analysis of Cardamine kokaiensis of Brassicaceae has suggested that a substantial amount of genes, including petal and stamen developmental genes, are expressed differentially between CH and CL flowers . However, the key regulatory gene in controlling the CH-CL transition has not been identified. In the present study, the floral organs most affected in the CH-CL transition as the photoperiod was extended were the petals and stamens. The floral ABC model indicates that B-class MADS-box genes determine the development of the two types of floral organs [1, 7, 46]. Modification of these genes either in terms of sequence or expression in various plants leads to the morphological diversification of related floral organs [13, 14, 25, 47–52]. To understand the molecular switches related to this CH-CL transition, we investigated these genes in V. philippica. Three B-class MADS-box genes, VpTM6-1, VpTM6-2, and VpPI were isolated. The coding sequence variation of these B-class gene homologs does not immediately suggest any functional novelties relative to those in non-dimorphic flower model plants, such as Arabidopsis and Petunia. Nonetheless, the expression of these genes was significantly altered in CH, CL, and inCL flower development. In line with no distinguishable differences during early flower development and no observed floral homeosis, these genes shared a relatively similar expression pattern during floral organogenesis of CH, CL, and inCL flowers. However, in the later flower development stage, where distinct floral morphology (particularly the size/number of petals and stamens) were observed in CL and inCL flowers, the expression of VpTM6-1, VpTM6-2, and VpPI in flowers (particularly in petals and stamens) significantly decreased in CL and inCL flowers, especially compared to CH flowers. The variations in expression pattern were concomitantly consistent with the floral organ divergence that generates CH, inCL, and CL flowers in extended photoperiods. The downregulation of these B-class MADS-box genes occurred during the late developmental stages was not possible to alter the organ identity of petals and stamens, but might result in organ size reduction and developmental abortion. This was further supported by the observation that the extent of reduction in organ size/number was not strictly equivalent to the decrease extent of B-class gene expression in these organs (Additional file 6: Table S3), indicating that the drop in expression should not be a result of the lower proportion of petal/stamen tissues in CL and inCL flowers to those in CH flowers. Nonetheless, the CH-CL transition, as an indirect result of the downregulation in the expression of these B-class genes, cannot be excluded. Given the postdevelopmental role of B-class MADS-box genes [24, 50–52], we therefore concluded that long daylight inhibited the development of petals and stamens by directly or indirectly inhibiting the expression of VpTM6-1, VpTM6-2, and VpPI genes to produce CL flowers.
B-class MADS-box genes, encoding bifunctional transcription factors, activate or repress a substantial number of downstream targets , thus acting as a context-dependent transcriptional switch that directs flower development: either floral organ identity, or postdevelopment. Since floral homeosis did not occur in the CH-CL transition, possible postdevelopmental mechanisms of B-class genes in Viola were further discussed. In Arabidopsis, AP3 and PI positively regulate the expression of SPOROCYTELESS/NOZZLE (SPL/NZZ) and NAP (for NAC-LIKE, ACTIVATED BY AP3/PI, also known as NO APICAL MERISTEM) [24, 53]. SPL/NZZ is necessary for the formation of anther walls, and is required during the late stages of stamen development for microsporogenesis and consequent pollen formation [54–57]. On the other hand, NAP is involved in the transition between cell division and cell expansion phases during the growth of petals and stamens . AP3/PI also suppresses certain downstream genes, such as GNC and GNC-LIKE (GNL), that encode two GATA-type zinc finger proteins, which in turn regulate sugar response and nitrate metabolism genes, thereby providing a link between organ development and nutrient sensing . Short photoperiods induce the expression of VGA20ox and VGA3ox, which increases gibberellins that are also involved in CH-CL flower development in V. pubescens . Gibberellins regulate the expression of specific floral genes in Arabidopsis such as the B-class MADS-box genes [59, 60]. Therefore, upon perceiving regulatory signals such as photoperiod (or gibberellins), we assumed that the differential expression of these Viola B-class MADS-box genes might influence dimorphic flower development by regulating homologous genes SPL/NZZ, NAP, and GNC, which in turn affects the growth and development of petals and stamens. However, further functional studies involving genetic manipulation of V. philippica should be conducted to verify this hypothesis.
The novel role of B-class MADS-box genes in dimorphic flower development
B-class MADS-box genes include both AP3 and PI lineages that evolved to play a primary role in petal and stamen development and in the establishment of stamen functionality [12–16, 18, 61]. Coding sequence variations that lead to different PPIs associated with these proteins play an essential role in this functional evolutionary process [15, 16], whereas altering its expression pattern facilitates the acquisition of additional functions, thereby leading to new floral morphologies [17–19, 25, 50–52]. The transcriptional regulation of these genes roughly includes the initiation of expression during early floral stages and the maintenance of expression through the majority of floral organ development [6, 9, 46–48, 62, 63]. When expression is affected during floral initiation, homeotic alterations usually occur, resulting in multiple corolla or calyces [7–9, 15, 64, 65]. However, when the expression is altered during late developmental stages, the maturation or function of the organs is affected [13–16, 24, 40–43]. Compared to previously identified B-class MADS-box genes [3–6], VpTM6-1, VpTM6-2, and VpPI in V. philippica shared a similar expression pattern during flower development, indicating that these genes may play a conserved role in establishing floral organ identity. However, we found that differential expression of these genes during late developmental stages of CH and CL flowers is regulated by variations in photoperiod, thereby suggesting a novel role for these B-class MADS-box genes in dimorphic flower development.
Floral morphology, such as petal size/shape instead of change of organ identity, could be regulated by artificial control of B-class gene expression, such as in M. truncatula  and tomato , whereas severely downregulating either PFGLO2 or PFTM6 only results in the production of immature pollen in P. floridana [15, 16]. Interestingly, regulating gene expression to generate distinct floral morphology also occurs in nature, such as in the decrease in B-class MADS-box genes to generate CL flowers in V. philippica. The molecular mechanism underlying this regulation of B-class MADS-box genes in response to photoperiods in petals and stamens requires further investigation. Currently, at least two levels of divergence have been observed. VpTM6-1, VpTM6-2, and VpPI are expressed at higher levels in petals than in stamens in CH flowers. However, this decrease in the level of expression was more extensive in petals than in stamens, correlating to the absence of petals and the reduction to two fertile stamens in CL flowers. Moreover, VpPI interacted strongly with VpTM6-1, but did weakly with VpTM6-2, which was indicative of VpTM6-1 and VpTM6-2 divergence in dimerization activity and transcriptional activity. Such differences in heterodimerization capabilities have been observed in species that harbor duplicated genes such as Petunia and Physalis [12, 15, 16]. Since a single amino acid change in the I doamin is sufficient to alter PI-like dimerization activity during maize domestication , that this type of divergence might result from extensive seuquence divergence of the two VpTM6 proteins, particularly the two deleterious alterations (K66M, and S63_T64insYV) in the I domain, should also be considered in understanding the functional divergence of B-class MADS-box genes in V. philippica.
The comprehensive investigation of floral MADS-box genes could facilitate better understanding of CH and CL flower development in V. philippica. Nevertheless, to our knowledge, we were the first time to reveal that the differential floral expression of B-class MADS-box genes after floral induction and organogenesis in response to variations in photoperiod is associated with the development of the CH-CL breeding system in Viola. Our findings present new insight into the development and evolution of dimorphic flowers.
Plant materials and growth conditions
Seeds of V. philippica were collected and stored at the Northwest Normal University (Lanzhou, Gansu, China). They are available upon request. The seeds were sterilized by immersion in 30 % sodium hypochlorite solution for 20 min, and then rinsed three times with distilled water before sowing in triangular flasks containing MS (Murashige and Skoog) culture medium. After the fourth true leaves developed, the seedlings were transplanted to individual 100-mm (0.5 L) diameter plastic pots containing peat and vermiculite (v/v = 2:1). The plants were grown at 22-28 °C under 8-, 10-, 12-, 14-, and 16-h daylight, respectively, in a growth chamber. The temperature was kept by air-conditioners. The humidity was kept around 48 %, and light intensity was 116 μmol m−2s−1. The plants under different daylight were grown in parallel on the different shelves. The daylight length was controlled by time controller in each cultivated shelf. To avoid the reciprocal influence, each shelf was enclosed by black cloth that was manually removed every day10:00 am for 8 h for ventilation.
Flower morphology observation
The morphology of flower buds was observed under a stereomicroscope (Olympus SZ61, Tokyo, Japan). The ratio of CH, inCL, and CL flowers was evaluated under 8-, 10-, 12-, 14-, and 16-h daylight, respectively. One hundred plants were observed in each photoperiod, and about 200 flower buds were counted in each case. To measure floral organ size, 10 mature flowers of each type (CH, inCL, and CL) were analyzed. The images were captured using a camera linked to a stereomicroscope (Olympus SZ61, Tokyo, Japan).
Scanning electron microscopy and histological analyses
Flower buds at different stages were fixed in a 3:1 (v/v) ethanol:glacial acetic acid solution and kept at 4 °C, dehydrated through an increasing ethanol gradient of up to 100 % ethanol, and dried in a critical point drier. Samples were imaged using a scanning electron microscope (Hitachi S-450, Tokyo, Japan). For histological analyses, the whole green flower buds were dyed for 30 h using Love’s hematoxylin to dark red color. Then, the dyed flower buds were washed in running water for 5 h to remove excess dye until these became blue. Finally, the blue flower buds were dehydrated through an increasing ethanol gradient, cleared using xylene, and embedded in Paraplast (Sigma P3683, St. Louis, Missouri, USA). Cross sections (7-μm thickness) of the flower buds were mounted on the slides with water at 40 °C. The wax was cleared from the slides by washing with 100 % xylene. The images of the cleared slides were finally photographed under a Leica microscope (DMI4000B, Wetzlar, Germany).
The cDNA fragments of the targeted genes were isolated using degenerate primers (Additional file 7: Table S4) that were designed based on the conserved regions of the APETALA3 (AP3) and PISTILLATA (PI) orthologs from various plant species in GenBank (http://www.ncbi.nlm.nih.gov/). The full-length cDNA was assembled using 3′/5′-rapid amplification of cDNA ends (RACE). Universal 3′ and 5′ PCR primers were supplied by the SMARTer™ cDNA Library Construction Kit (Clontech, Mountain View, California, USA). After the RACE experiments, the full-length cDNA was amplified by routine RT-PCR using gene-specific primers (Additional file 7: Table S4). The cycling program consisted of an initial denaturation at 94 °C for 5 min, followed by 35 cycles at 94 °C for 30 s, 55 °C (degenerate primers) or 68 °C (gene-specific primers) for 30 s, 72 °C for 30 s, and a final extension of 72 °C for 10 min.
Sequence divergence evaluation and phylogenetic analysis
Neutral or deleterious amino acid mutations were predicted by PROVEAN, the protein variation effect analyzer with default parameter setting (http://provean.jcvi.org/index.php). The amino acid sequences of these genes were aligned using CLUSTALW1.81 under default settings with manual adjustments. Gaps were introduced for proper alignment. The neighbor-joining phylogeny trees using protein sequences were constructed using MEGA5 . Bootstrap values were based on 1,000 replicates.
The plant growth cycle of V. philippica was too long, few floral buds developed under 8-h daylight. Therefore, stages 3, 4, and 5 floral buds, young leaves, and floral organs of mature flowers were respectively collected under 10-, 12- and 16-h light period in the glasshouse. Total RNA was extracted using TRIzol reagent (TIANGEN, Beijing, China). For qRT-PCR analysis, a PrimeScript RT Reagent Kit (TaKaRa, Dalian, China), SYBR Premix EX Taq II (TaKaRa, Dalian, China), and gene-specific primers (Additional file 7: Table S4) were used. An 18S ribosomal RNA gene was used as internal reference (AB354544.1). The primers were designed using DNAMAN, and evaluating of their specificity and primer efficiency indicated that they were suitable for comparative qRT-PCR analysis (Additional file 8: Figure S4). The amplification conditions were 95 °C for 30 s for one cycle, followed by 40 cycles of 95 °C for 5 s, and 60 °C for 30 s. Three independent biological samples were used. Expression levels were calculated according to Livak and Schmittgen .
RNA in situ hybridization
Floral buds at various developmental stages were fixed in 4 % (wt/vol = 4 g/100 mL) paraformaldehyde and embedded in Paraplast (Sigma P3683, St. Louis, Missouri, USA). When ATG was set as 1, around 356-bp fragment of VpTM6-2 (positions 331–687) and VpPI (positions 236–591) was used as template for both sense and antisense probe synthesis using the DIG RNA labeling kit (Roche, Mannheim, Germany) and T7 RNA polymerase (Roche, Mannheim, Germany). Hybridization was performed as described by Javelle , with the alteration that we washed the slides at a temperature of 50 °C. Sections of floral tissues of CH, inCL and CL flowers were incubated in the same hybridization solution for each probe. Images were captured with a Leica microscope (DMI4000B, Wetzlar, Germany).
Yeast two-hybrid analysis
The ORFs of VpTM6-1, VpTM6-1, and VpPI were cloned into the pGADT7 or PGBKT7 vector (Clontech, Mountain View, California, USA). The co-transformed yeast cells of BD and AD fusion plasmids were selected by growth on SD plates lacking leucine (Leu) and tryptophan (Trp). Interactions were analyzed on the SD plates lacking Leu, Trp, adenine (Ade), and histidine (His), and further confirmed by the non-lethal ß-galactosidase activity assay in the yeast strain AH109. Before checking PPIs, the toxicity and self-activation capability of these B-class MADS-domain proteins were checked. These experiments were performed according to Gong and He .
Sequencing and primer information
Sequencing of all constructs and primer synthesis were performed by Huada (Beijing, China). All primers used in this study are presented in Additional file 7: (Table S4).
AP3, APETALA3; cDNA, complementary DNA; CH, chasmogamous; CL, cleistogamous. GLO, GLOBOSA; NJ, neighbor-joining; ORF, open reading frame; PI, PISTILLATA; PPI, protein-protein interaction; qRT-PCR, quantitative RT-PCR; RACE, rapid amplification of cDNA ends; SNP, single nucleotide polymorphism; TM6, TOMATO MADS BOX GENE 6
The assistance of Dr. PC Gong (State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences) in yeast two-hybrid analysis and PROVEAN prediction is acknowledged.
This work was supported by the NSFC grants (31560066 and 31260054), the Young Teachers Improving Program from the Northwest Normal University (NWNU-LKQN-13-20), and the CAS/SAFEA International Partner Program for Creative Research Teams of “Systematic and Evolution Botany”.
Availability of data and materials
All relevant supporting data can be found within the additional files accompanying this article. Sequence data described in this article can be found in GenBank (http://www.ncbi.nlm.nih.gov) under the accessions of KU318322 (VpTM6-1), KU318323 (VpTM6-2), and KU318324 (VpPI).
QXL, KS and CYH conceived and designed the work. KS identified plant species. QXL performed all experiments. JZ participated in the in situ hybridizations. QDH and JW involved in RNA extraction and expression study. QXL, KS and CYH analyzed the data. QXL, CYH and KS wrote the manuscript. All authors have read and approved the manuscript.
The authors declare that they have no competing interests.
Consent for publication
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