Open Access

Erratum to: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

  • P. Bajgain1, 2Email author,
  • M. N. Rouse3, 4,
  • P. Bulli5,
  • S. Bhavani6,
  • T. Gordon7,
  • R. Wanyera8,
  • P. N. Njau8,
  • W. Legesse9,
  • J. A. Anderson2Email author and
  • M. O. Pumphrey5
BMC Plant BiologyBMC series – open, inclusive and trusted201616:24

https://doi.org/10.1186/s12870-015-0684-1

Received: 11 December 2015

Accepted: 14 December 2015

Published: 19 January 2016

The original article was published in BMC Plant Biology 2015 15:249

Erratum

Upon publication of this article [1] it was noticed that Tables Two-Seven (Tables 1, 2, 3, 4, 5 and 6 here) were formatted incorrectly. The Tables have now been updated in the original article and can also be seen below.
Table 1

List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers

SNPa

Chrb

Pos (cM)

P value

R2 (%)c

KenOff13d

KenMain13e

EthOff13f

EthOff14g

IWB1351

0

0.0

9.18E-04

1.4

-

-

-

+

IWB11987

0

0.0

2.71E-04

4.0

-

-

-

-

IWB13304

0

0.0

9.18E-04

1.4

-

-

-

+

IWB20617

0

0.0

8.92E-04

0.5

-

-

-

-

IWB40153

0

0.0

9.18E-04

1.4

-

-

-

+

IWB65634

0

0.0

2.18E-04

3.9

-

-

-

-

IWA3120

1B

90.3

9.07E-04

0.6

-

-

-

-

IWB21176

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB31027

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB56771

1B

90.3

9.34E-04

0.6

-

-

+

-

IWB59663

1B

90.3

9.64E-04

0.6

-

-

+

-

IWB49915

2A

122.5

9.18E-04

1.4

-

-

-

+

IWB49914

2A

123.6

9.18E-04

1.4

-

-

-

+

IWB22672

2A

159.7

9.98E-04

0.6

-

-

+

-

IWB2369

2B

48.5

7.68E-04

0.4

-

-

-

-

IWA4275

2B

105.9

8.75E-04

1.4

-

-

-

-

IWA8534

2B

126.1

1.80E-04

0.3

-

+

-

-

IWB23660

2B

126.3

1.79E-04

0.3

-

+

-

-

IWB25868

2B

126.3

3.11E-04

0.7

-

+

-

-

IWB69631

2B

126.3

3.11E-04

0.7

-

+

-

-

IWB25869

2B

126.5

3.11E-04

0.7

-

+

-

-

IWB32143

2B

157.2

5.05E-04

4.6

-

-

-

-

IWB8481

2D

9.2

8.44E-04

0.5

-

-

-

-

IWA5203

3B

11.5

7.97E-04

0.4

-

-

-

-

IWB30730

3B

11.5

7.74E-04

1.3

-

-

-

-

IWB12193

3B

11.6

3.24E-04

4.2

-

+

-

-

IWB49924

3B

11.6

5.65E-04

0.2

-

-

-

-

IWB65737

3B

11.6

9.15E-04

0.6

-

-

-

-

IWB60424

3B

13.8

5.02E-04

0.1

-

-

-

-

IWB36021

3B

14.1

8.31E-04

1.3

-

-

-

-

IWA2493

3B

32.2

1.49E-04

0.2

-

-

+

-

IWB40004

4A

30.9

9.12E-04

0.6

-

+

-

-

IWB52694

4A

43.4

9.96E-05

3.2

-

+

-

-

IWB46973

4A

47.0

8.26E-04

1.3

-

+

-

-

IWB56556

4A

47.0

7.54E-04

1.3

-

-

-

-

IWB67877

4A

47.0

8.34E-04

1.3

-

-

-

-

IWB47184

5A

69.6

3.44E-04

0.3

-

-

+

-

IWA233

6A

66.0

8.48E-04

1.3

-

+

-

-

IWB24757

6B

119.7

6.33E-04

1.1

-

-

-

-

IWB35697

6B

119.7

1.77E-05

1.3

-

-

+

+

IWB6474

6B

119.7

6.33E-04

1.1

-

-

-

-

IWB45581

6B

120.6

3.00E-04

0.6

-

-

-

-

IWB5070

7A

211.0

2.19E-04

3.9

-

-

-

-

IWB1874

7A

212.7

3.18E-04

0.3

-

-

-

-

IWB4830

7A

212.7

4.50E-04

4.5

-

-

+

-

IWB62560

7A

213.2

2.30E-04

0.6

-

-

-

-

IWB47548

7B

153.4

6.50E-04

0.3

-

-

-

-

IWA4175

7B

177.1

9.52E-04

0.6

-

-

-

-

aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches

bChr ‘0’ indicates unmapped SNPs that were significant in the analysis

cR2 Indicates percent of phenotypic variation explained by the significant locus

d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments

Table 2

List of SNPs significantly associated with seedling resistance to Ug99 (race TTKSK)

SNP

Chra

Pos (cM)

P value

R2 (%)b

IWB2159

0

0.0

3.15E-06

4.8

IWB14222

0

0.0

3.45E-04

2.8

IWB36324

0

0.0

6.44E-04

2.5

IWB37066

0

0.0

3.62E-06

4.8

IWB40312

0

0.0

1.97E-07

6.1

IWB49537

0

0.0

2.81E-04

2.9

IWB68926

0

0.0

3.96E-05

3.7

IWA642

1D

67.7

1.32E-04

3.2

IWB24497

3B

67.5

8.43E-06

4.4

IWB30621

3B

67.5

1.97E-07

6.1

IWB42046

3B

67.5

8.27E-08

6.5

IWB4823

3B

67.5

8.43E-06

4.4

IWB56471

3B

67.5

1.97E-07

6.1

IWB61425

3B

67.5

8.43E-06

4.4

IWB59929

3B

74.4

3.91E-05

3.7

IWB9451

3B

76.9

3.36E-04

2.8

IWA5363

4A

40.3

7.90E-04

2.4

IWA3394

5B

132.3

2.29E-05

3.9

IWB7593

5B

132.3

6.14E-04

2.5

IWB822

5B

134.1

5.30E-04

2.6

IWB46318

5B

215.7

1.56E-05

4.1

IWA2099

5B

216.7

9.72E-05

3.3

IWA2100

5B

216.7

1.13E-04

3.3

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 3

List of SNPs significantly associated with seedling resistance to race TRTTF

SNP

Chra

Pos (cM)

P value

R2 (%)b

IWB843

0

0.0

1.43E-04

15.4

IWB8113

0

0.0

8.36E-04

13.2

IWB9699

0

0.0

8.36E-04

12.9

IWB25143

0

0.0

4.62E-07

10.8

IWB27028

0

0.0

5.95E-04

10.7

IWB48121

0

0.0

1.83E-04

7.7

IWB64530

0

0.0

8.36E-04

7.6

IWB67724

0

0.0

2.26E-04

6.1

IWB68822

0

0.0

8.36E-04

4.2

IWB9794

1B

43.9

6.06E-04

4.2

IWB72495

1B

53.3

6.06E-04

4.1

IWB11356

1B

62.4

5.66E-04

4.0

IWB11357

1B

62.4

5.66E-04

3.4

IWB60559

1B

62.4

6.06E-04

3.2

IWB65404

1B

62.4

4.44E-04

3.2

IWB11819

1B

62.6

6.06E-04

3.2

IWB11820

1B

62.6

4.44E-04

3.2

IWB34561

1B

62.6

6.06E-04

3.6

IWB47684

1B

62.6

7.00E-04

3.6

IWB53143

1B

62.6

9.38E-04

3.5

IWB6592

1B

62.6

6.06E-04

3.5

IWB41306

1B

64.9

6.06E-04

3.4

IWB44021

1D

8.7

5.95E-04

3.4

IWA8551

1D

50.6

7.02E-04

3.4

IWB24961

5D

200.3

3.70E-04

3.4

IWB57210

5D

200.3

3.70E-04

3.4

IWB12448

6A

1.9

4.82E-04

3.4

IWB33595

6A

3.4

1.14E-04

3.4

IWB11274

6A

4.7

3.93E-08

3.3

IWB53755

6A

4.7

1.25E-04

3.2

IWA5416

6A

5.6

2.81E-09

3.4

IWA5781

6A

5.7

3.17E-09

3.3

IWB7601

6A

6.4

1.85E-05

3.7

IWB47842

6A

7.0

1.31E-04

3.7

IWA3856

6A

12.5

1.85E-05

28.6

IWA6871

6A

12.5

1.85E-05

27.2

IWB23520

6A

12.5

1.85E-05

25.7

IWB2392

6A

12.5

6.41E-12

25.7

IWB26415

6A

12.5

1.85E-05

24.7

IWB43804

6A

12.5

1.85E-05

24.7

IWB9075

6A

12.5

3.00E-06

24.6

IWA7006

6A

12.8

2.06E-05

24.3

IWB22036

6A

12.9

4.64E-20

20.2

IWB10105

6A

13.5

5.80E-10

16.4

IWB11315

6A

13.5

7.37E-18

15.4

IWB23521

6A

13.5

5.98E-13

15.4

IWB26414

6A

13.5

6.11E-12

15.4

IWB35219

6A

13.5

1.18E-17

15.4

IWB43805

6A

13.5

1.98E-18

14.8

IWB43810

6A

13.5

1.85E-05

14.8

IWB58271

6A

13.5

2.78E-19

14.8

IWB60233

6A

13.5

6.11E-12

14.8

IWB6358

6A

13.5

1.85E-05

12.5

IWB66015

6A

13.5

6.11E-12

12.5

IWB67413

6A

13.5

7.37E-18

12.5

IWB67415

6A

13.5

8.35E-18

12.4

IWB72957

6A

13.5

1.98E-18

12.4

IWA272

6A

15.7

1.50E-04

12.4

IWB64917

6A

15.7

3.29E-04

11.9

IWB5029

6A

16.0

2.84E-15

11.8

IWB35595

6A

16.6

2.57E-12

10.0

IWB43808

6A

16.6

2.57E-12

9.1

IWB64918

6A

16.6

2.57E-12

7.6

IWB72956

6A

16.6

2.57E-12

6.5

IWA7913

6A

17.0

2.57E-12

6.1

IWB23519

6A

17.0

5.44E-10

6.0

IWA705

6A

20.0

5.56E-06

6.0

IWA4962

6A

21.1

4.26E-07

5.4

IWB31479

6A

21.1

4.72E-07

5.4

IWB48751

6A

21.1

1.01E-08

5.4

IWB20143

6A

22.0

2.44E-10

5.4

IWA4551

6A

22.9

6.94E-11

5.4

IWA4552

6A

22.9

1.11E-10

5.4

IWB22191

6A

22.9

6.67E-06

5.4

IWB28421

6A

22.9

2.44E-10

5.4

IWB50019

6A

22.9

2.44E-10

5.3

IWB28338

6A

23.0

6.67E-06

4.8

IWB1550

6A

25.5

2.19E-10

4.4

IWB22216

6A

25.5

5.42E-05

4.3

IWB30507

6A

25.5

2.19E-10

4.3

IWB40111

6A

25.5

5.36E-06

3.8

IWB52325

6A

25.5

2.06E-10

3.5

IWB64084.2

6B

9.8

3.68E-05

5.3

IWB11653.2

6B

14.5

2.10E-05

5.0

IWB14901

7A

124.3

2.72E-04

3.9

IWB48466

7A

217.0

8.24E-04

3.2

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 4

List of SNPs significantly associated with seedling resistance to race TKTTF

SNP

Chra

Pos (cM)

P value

R2 (%)b

IWB31876

0

0.0

8.08E-04

9.7

IWB71333

0

0.0

4.84E-04

9.6

IWB57448

1A

21.5

8.57E-04

9.3

IWA8622

1A

24.4

2.26E-04

9.2

IWB22324

4A

142.3

5.22E-06

9.1

IWA4651

4A

144.4

3.10E-08

8.8

IWB27971

4A

144.4

1.97E-05

7.5

IWB34478

4A

144.4

3.37E-05

6.8

IWB34733

4A

144.4

1.54E-11

4.9

IWB3569

4A

144.4

3.95E-05

3.9

IWB61312

4A

144.4

3.95E-05

3.7

IWB63979

4A

144.4

1.19E-09

3.5

IWB68386

4A

144.4

8.24E-04

3.2

IWA1505

4A

145.2

1.15E-08

3.1

IWA3449

4A

147.1

3.83E-05

3.9

IWB2554

4A

147.1

1.61E-05

3.2

IWB62397

4A

147.1

3.09E-04

13.9

IWB12146

4A

150.7

5.47E-07

11.1

IWB47019

4A

150.7

4.39E-07

9.2

IWB59346

4A

150.7

5.93E-06

8.7

IWB1407

4A

151.2

5.19E-05

8.1

IWB14910

4A

151.2

3.47E-05

8.0

IWB71978

4A

151.2

3.47E-05

8.0

IWB59368

4A

151.3

3.14E-04

7.8

IWB68322

4A

151.3

9.43E-06

7.6

IWB53393

4A

153.0

1.35E-04

7.6

IWB35434

4A

154.1

8.01E-04

7.5

IWB51926

4A

154.3

2.22E-04

7.5

IWB59099

4A

154.3

9.09E-06

7.4

IWB70193

4A

154.3

5.34E-06

7.4

IWB35545

4A

163.8

9.37E-07

7.4

IWA1410

4A

164.1

5.23E-08

7.1

IWA4084

4A

164.1

2.39E-08

7.0

IWA4858

4A

164.1

4.55E-07

6.9

IWA5353

4A

164.1

1.49E-06

6.9

IWA7364

4A

164.1

2.46E-08

6.5

IWA7365

4A

164.1

1.38E-08

6.4

IWB21715

4A

164.1

5.74E-08

6.0

IWB23332

4A

164.1

2.85E-07

6.0

IWB26256

4A

164.1

2.37E-06

6.0

IWB26495

4A

164.1

1.85E-07

5.7

IWB275

4A

164.1

3.45E-07

5.7

IWB27679

4A

164.1

5.06E-04

5.4

IWB29568

4A

164.1

1.69E-07

5.4

IWB3001

4A

164.1

3.44E-07

5.3

IWB31447

4A

164.1

5.51E-07

5.0

IWB34609

4A

164.1

1.17E-06

4.9

IWB36388

4A

164.1

4.52E-07

4.9

IWB4517

4A

164.1

1.46E-05

4.9

IWB48829

4A

164.1

9.10E-07

4.9

IWB49256

4A

164.1

5.08E-07

4.7

IWB52393

4A

164.1

1.16E-06

4.2

IWB6097

4A

164.1

2.58E-06

3.9

IWB72383

4A

164.1

2.60E-08

3.7

IWB9276

4A

164.1

1.90E-07

3.7

IWA2224

5A

88.0

8.03E-04

3.5

IWA2836

5A

94.9

5.08E-04

3.2

IWB34927

5A

94.9

9.63E-04

3.2

IWB72540

6B

108.9

6.96E-04

3.5

IWA3268

6B

109.9

2.33E-04

3.2

IWA5605

6B

109.9

3.19E-04

3.1

IWA5606

6B

109.9

9.46E-04

10.1

IWB56595

6B

109.9

2.40E-04

9.3

IWB2749

6B

110.4

7.59E-04

9.3

IWB2751

6B

110.4

4.59E-04

8.3

IWB43467

6B

110.4

5.88E-04

7.4

IWB48603

6B

110.4

4.34E-04

7.3

IWB50367

6B

110.4

1.37E-04

6.7

IWB56594

6B

110.4

5.88E-04

6.7

IWB61565

6B

110.4

3.01E-04

6.7

IWB65679

6B

110.4

6.45E-04

6.1

IWB43133

6B

113.3

5.16E-04

5.3

IWB61528

6B

113.3

5.16E-04

5.2

IWB14375

6B

113.7

1.68E-04

4.8

IWB1747

6B

113.7

5.46E-04

4.7

IWB30381

6B

113.7

7.14E-04

4.4

IWB41515

6B

113.7

4.78E-05

4.2

IWB57727

6B

113.7

7.14E-04

4.2

IWB58200

6B

113.7

3.42E-04

4.2

IWB59006

6B

113.7

1.88E-05

4.2

IWB59306

6B

113.7

6.29E-07

4.1

IWB70316

6B

113.7

2.35E-04

4.1

IWB72471

6B

113.7

1.52E-04

4.1

IWB9416

6B

113.7

4.59E-06

4.1

IWA4245

6B

114.4

2.10E-04

4.0

IWA4246

6B

116.2

8.75E-04

3.9

IWB28557

6B

116.2

4.91E-04

3.9

IWB59175.2

6B

119.0

4.47E-04

3.9

IWB24880

6B

120.3

1.35E-04

3.8

IWB24881

6B

120.3

8.13E-04

3.7

IWB41216

6B

120.3

7.51E-04

3.7

IWB24882

6B

120.6

1.35E-04

3.5

IWB3553

6B

120.6

5.79E-05

3.5

IWB45581

6B

120.6

2.20E-05

3.5

IWB46893

6B

120.6

9.30E-05

3.5

IWB66027

6B

120.6

5.14E-07

3.4

IWB10711.2

6B

121.8

2.38E-08

3.4

IWB23602

6B

121.8

1.39E-04

3.4

IWB23603

6B

121.8

1.86E-04

3.4

IWB40587

6B

121.8

1.69E-04

3.4

IWB44802

6B

121.8

1.57E-06

3.3

IWB73072

6B

121.8

2.25E-08

3.3

IWB48548

6B

121.9

1.57E-06

3.3

IWB28880

6B

122.1

1.57E-06

3.3

IWB44669

6B

122.1

1.08E-07

3.3

IWB464

6B

122.1

7.18E-04

3.3

IWB71190

6B

122.2

2.71E-04

3.2

IWB43213

6B

122.3

1.69E-04

3.2

IWB41217

6B

122.9

6.96E-04

3.2

IWB47075

6B

122.9

6.28E-09

3.2

IWB34899.2

7A

6.4

3.22E-05

5.0

aChr ‘0’ indicates unmapped SNPs that were significant in the analysis

bR2 Indicates the percent of phenotypic variation explained by the significant locus

Table 5

Elite spring wheat lines from North American breeding programs that exhibit high level of adult plant resistance (APR) to Ug99 in four field environments

Linea

Originb

Environmentc

Avg severityd

  

KenOff13

KenMain13

EthOff13

EthOff14

 

Park

Alberta

25

5

20

20

18

9262

CIMMYT

NA

5

30

30

22

AC_Cadillac

Manitoba

18

5

20

2

11

AC_Splendor

Manitoba

8

5

11

NA

8

Glencross

Manitoba

18

15

40

5

19

Peace

Manitoba

NA

5

10

5

7

Fortuna

MSU

8

5

6

10

7

Hi-Line

MSU

NA

5

30

30

22

Newana

MSU

NA

5

13

20

13

Thatcher

MSU

10

5

10

20

11

AC_Eatonia

Saskatchewan

NA

5

40

10

18

CDC_Alsak

Saskatchewan

5

5

35

10

14

CDC_Osler

Saskatchewan

NA

5

5

5

5

Neepawa

Saskatchewan

8

5

35

10

14

Roblin

Saskatchewan

NA

5

25

NA

15

Selkirk

Saskatchewan

10

5

10

50

19

10010-20

UCD

15

5

20

10

13

UC1642

UCD

NA

5

45

20

23

UC1682

UCD

10

5

25

50

23

MN03119-4

UMN

NA

10

45

20

25

MN03148

UMN

25

5

25

20

19

MN08013-2

UMN

10

5

30

50

24

HW080169

WSU

NA

5

40

30

25

Avg_APR_Lines

-

18

8

31

28

21

Avg_GWAS_Panel

-

33

35

52

50

43

a‘Avg_APR_Lines’ represents the mean disease severity (%) across the lines showing high level of APR, and ‘Avg_GWAS_Panel’ represents the mean disease severity among all lines in the GWAS panel

bSource (breeding program) of the line showing APR to Ug99

cDisease severity (%) for each environment

dThe average disease severity (%) across four environments

Table 6

Elite spring wheat lines from North American breeding programs that exhibit high level of seedling resistance to race TTKSK. For each line, the observed seedling infection type (IT) for each race and the corresponding value on the linear scale are presented under the column ‘IT’ and ‘Linear Score’, respectively

Linea

Originb

TTKSK

TRTTF

TKTTF

  

IT

Linear Score

IT

Linear Score

IT

Linear Score

9253

CIMMYT

2- / 3+

4

2 / 3+

5

2-

4

9262

CIMMYT

2

5

2

5

;2-

1

9263

CIMMYT

;12-

1

;1

1

0; / 33+

0

AC_Cadillac

Manitoba

22+

5

2

5

0;1

1

Peace

Manitoba

22+

5

2-;

3

0;

0

Hi-Line

MSU

0;3-

2

2-

4

33-

9

MT0415

MSU

2

5

33+

8

01

1

Thatcher

MSU

0; / 3+

0

33+

8

33+

8

AC_Crystal

Saskatchewan

2+

6

2

5

32+

7

AC_Karma

Saskatchewan

2

5

2

5

22+

5

AC_Vista

Saskatchewan

22+

5

2

5

22+

5

SD4214

SDSU

2+

6

3+

9

12-

3

SD4279

SDSU

2

5

2

5

33+

9

PI610750

UCD

22+

5

2-

4

2-

4

UC1643

UCD

2

5

22-

5

0;1

1

Avg_Resistant_Lines

-

-

4

-

5

-

4

Avg_GWAS_Panel

-

-

8

-

7

-

4

a‘Avg_ Resistant_Lines’ and ‘Avg_GWAS_Panel’ represent the mean linear score among lines resistant to TTKSK, and all lines in the GWAS panel, respectively

bSource (breeding program) of the line showing APR to Ug99

Notes

Declarations

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Authors’ Affiliations

(1)
Department of Agronomy, Purdue University
(2)
Department of Agronomy and Plant Genetics, University of Minnesota
(3)
United States Department of Agriculture-Agricultural Research Service (USDA-ARS), Cereal Disease Laboratory
(4)
Department of Plant Pathology, University of Minnesota
(5)
Department of Crop and Soil Sciences, Washington State University
(6)
International Maize and Wheat Improvement Center (CIMMYT), ICRAF House
(7)
United States Department of Agriculture-Agricultural Research Service (USDA-ARS)
(8)
Kenya Agricultural and Livestock Research Organization (KALRO)
(9)
Ethiopian Institute of Agricultural Research (EIAR)

Reference

  1. Bajgain P, Rouse MN, Bulli P, Bhavani S, Gordon T, Wanyera R, et al. Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races. BMC Plant Biol. 2015;15:249.PubMedPubMed CentralView ArticleGoogle Scholar

Copyright

© Bajgain et al. 2015

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