Skip to main content

Table 1 List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers

From: Erratum to: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

SNPa Chrb Pos (cM) P value R2 (%)c KenOff13d KenMain13e EthOff13f EthOff14g
IWB1351 0 0.0 9.18E-04 1.4 - - - +
IWB11987 0 0.0 2.71E-04 4.0 - - - -
IWB13304 0 0.0 9.18E-04 1.4 - - - +
IWB20617 0 0.0 8.92E-04 0.5 - - - -
IWB40153 0 0.0 9.18E-04 1.4 - - - +
IWB65634 0 0.0 2.18E-04 3.9 - - - -
IWA3120 1B 90.3 9.07E-04 0.6 - - - -
IWB21176 1B 90.3 9.64E-04 0.6 - - + -
IWB31027 1B 90.3 9.64E-04 0.6 - - + -
IWB56771 1B 90.3 9.34E-04 0.6 - - + -
IWB59663 1B 90.3 9.64E-04 0.6 - - + -
IWB49915 2A 122.5 9.18E-04 1.4 - - - +
IWB49914 2A 123.6 9.18E-04 1.4 - - - +
IWB22672 2A 159.7 9.98E-04 0.6 - - + -
IWB2369 2B 48.5 7.68E-04 0.4 - - - -
IWA4275 2B 105.9 8.75E-04 1.4 - - - -
IWA8534 2B 126.1 1.80E-04 0.3 - + - -
IWB23660 2B 126.3 1.79E-04 0.3 - + - -
IWB25868 2B 126.3 3.11E-04 0.7 - + - -
IWB69631 2B 126.3 3.11E-04 0.7 - + - -
IWB25869 2B 126.5 3.11E-04 0.7 - + - -
IWB32143 2B 157.2 5.05E-04 4.6 - - - -
IWB8481 2D 9.2 8.44E-04 0.5 - - - -
IWA5203 3B 11.5 7.97E-04 0.4 - - - -
IWB30730 3B 11.5 7.74E-04 1.3 - - - -
IWB12193 3B 11.6 3.24E-04 4.2 - + - -
IWB49924 3B 11.6 5.65E-04 0.2 - - - -
IWB65737 3B 11.6 9.15E-04 0.6 - - - -
IWB60424 3B 13.8 5.02E-04 0.1 - - - -
IWB36021 3B 14.1 8.31E-04 1.3 - - - -
IWA2493 3B 32.2 1.49E-04 0.2 - - + -
IWB40004 4A 30.9 9.12E-04 0.6 - + - -
IWB52694 4A 43.4 9.96E-05 3.2 - + - -
IWB46973 4A 47.0 8.26E-04 1.3 - + - -
IWB56556 4A 47.0 7.54E-04 1.3 - - - -
IWB67877 4A 47.0 8.34E-04 1.3 - - - -
IWB47184 5A 69.6 3.44E-04 0.3 - - + -
IWA233 6A 66.0 8.48E-04 1.3 - + - -
IWB24757 6B 119.7 6.33E-04 1.1 - - - -
IWB35697 6B 119.7 1.77E-05 1.3 - - + +
IWB6474 6B 119.7 6.33E-04 1.1 - - - -
IWB45581 6B 120.6 3.00E-04 0.6 - - - -
IWB5070 7A 211.0 2.19E-04 3.9 - - - -
IWB1874 7A 212.7 3.18E-04 0.3 - - - -
IWB4830 7A 212.7 4.50E-04 4.5 - - + -
IWB62560 7A 213.2 2.30E-04 0.6 - - - -
IWB47548 7B 153.4 6.50E-04 0.3 - - - -
IWA4175 7B 177.1 9.52E-04 0.6 - - - -
  1. aUnderlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches
  2. bChr ‘0’ indicates unmapped SNPs that were significant in the analysis
  3. cR2 Indicates percent of phenotypic variation explained by the significant locus
  4. d-gThe ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments
Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us