Kim HJ, Triplett BA: Cotton fiber growth in planta and in vitro: Models for plant cell elongation and cell wall biogenesis. Plant Physiol. 2001, 127: 1361-1366.
Article
PubMed
PubMed Central
Google Scholar
Sunilkumar G, Campbell LM, Puckhaber L, Stipanovic RD, Rathore KS: Engineering cottonseed for use in human nutrition by tissue-specific reduction of toxic gossypol. Proc Natl Acad Sci USA. 2006, 103: 18054-18059.
Article
PubMed
PubMed Central
Google Scholar
Zhang HB, Li Y, Wang B, Chee PW: Recent advances in cotton genomics. Int J Plant Genomics. 2008, 2008: 742304-
Article
PubMed
PubMed Central
Google Scholar
Basra AS, Malik AC: Development of the cotton fiber. Int Rev Cytol. 1984, 89: 65-113.
Article
Google Scholar
Taliercio EW, Boykin D: Analysis of gene expression in cotton fiber initials. BMC Plant Biol. 2007, 7: 22-
Article
PubMed
PubMed Central
Google Scholar
Jacob-Wilk D, Kurek I, Hogan P, Delmer DP: The cotton fiber zinc-binding domain of cellulose synthase A1 from Gossypium hirsutum displays rapid turnover in vitro and in vivo. Proc Natl Acad Sci USA. 2006, 103: 12191-12196.
Article
PubMed
PubMed Central
Google Scholar
Wu Z, Soliman KM, Bolton JJ, Saha S, Jenkins NJ: Identification of differentially expressed genes associated with cotton fiber development in a chromosomal substitution line (CS-B22sh). Funct Integr Genomics. 2007, 8: 165-174.
Article
PubMed
Google Scholar
Lee JJ, Woodward AW, Chen ZJ: Gene expression changes and early events in cotton fibre development. Ann Bot. 2007, 100: 1391-401.
Article
PubMed
PubMed Central
Google Scholar
Chen ZJ, Scheffler BE, Dennis E, Triplett BA, Zhang T, Guo W, Chen X, Stelly DM, Rabinowicz PD, Town CD, Arioli T, Brubaker C, Cantrell RG, Lacape JM, Ulloa M, Chee P, Gingle AR, Haigler CH, Percy R, Saha S, Wilkins T, Wright RJ, Van Deynze A, Zhu Y, Yu S, Abdurakhmonov I, Katageri I, Kumar PA, Mehboob-Ur-Rahman , Zafar Y, Yu JZ, Kohel RJ, Wendel JF, Paterson AH: Toward sequencing cotton (Gossypium) genomes. Plant Physiol. 2007, 145: 1303-1310.
Article
PubMed
PubMed Central
Google Scholar
Kim HJ, Triplett BA: Characterization of GhRac1 GTPase expressed in developing cotton (Gossypium hirsutum L.) fibers. Biochim Biophys Acta. 2004, 1679: 214-221.
Article
PubMed
Google Scholar
Zhang B, Wang Q, Wang K, Pan X, Liu F, Guo T, Cobb GP, Anderson TA: Identification of cotton microRNAs and their targets. Gene. 2007, 397: 26-37.
Article
PubMed
Google Scholar
Lee RC, Feinbaum RL, Ambros V: The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell. 1993, 75: 843-54.
Article
PubMed
Google Scholar
Wightman B, Ha I, Ruvkun G: Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern-formation in C. elegans. Cell. 1993, 75: 855-62.
Article
PubMed
Google Scholar
Bartel DP: MicroRNAs: genomics, biogenesis, mechanism and function. Cell. 2004, 17: 1658-1673.
Google Scholar
Axtell MJ, Jan C, Rajagopalan R, Bartel DP: A two hit triggers for siRNA Biogenesis in plants. Cell. 2006, 127: 565-77.
Article
PubMed
Google Scholar
Quesada V, Dean C, Simpson GG: Regulated RNA processing in the control of Arabidopsis flowering. Int J Dev Biol. 2005, 49: 773-780.
Article
PubMed
Google Scholar
Zhai J, Liu J, Liu B, Li P, Meyers BC, Chen X, Cao X: Small RNA-directed epigenetic natural variation in Arabidopsis thaliana. PLoS Genetics. 2008, 4: e10000056-
Article
Google Scholar
Pandey SP, Shahi P, Gase K, Baldwin IT: Herbivory-induced changes in the small-RNA transcriptome and phytohormone signaling in Nicotiana attenuata. Proc Natl Acad Sci USA. 2008, 105: 4559-64.
Article
PubMed
PubMed Central
Google Scholar
Zhang B, Wang Q, Pan X: MicroRNAs and their regulatory roles in animals and plants. J Cell Physiol. 2007, 210: 279-89.
Article
PubMed
Google Scholar
Wang QL, Li ZH: The functions of microRNAs in plants. Front Biosci. 2007, 12: 3975-3982.
PubMed
Google Scholar
Willmann MR, Poethig RS: Conservation and evolution of miRNA regulatory programs in plant development. Curr Opin Plant Biol. 2007, 10: 503-11.
Article
PubMed
PubMed Central
Google Scholar
Ambros V, Bartel B, Bartel DP, Burge CP, Carrington JC, Chen X, Dreyfuss G, Eddy SR, Griffiths-Jones S, Marshall M, Matzke M, Ruvkun G, Tuschl T: A uniform system for microRNA annotation. RNA. 2003, 9: 277-279.
Article
PubMed
PubMed Central
Google Scholar
Griffiths-Jones S: The microRNA Registry. Nucleic Acids Res. 2004, 32: D109-D112.
Article
PubMed
PubMed Central
Google Scholar
Mardis E: The impact of next-generation sequencing technology on genetics. Trends in Genetics. 2008, 24: 133-41.
Article
PubMed
Google Scholar
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP: A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana. Genes Dev. 2006, 20: 3407-25.
Article
PubMed
PubMed Central
Google Scholar
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, Cunningham R, Davis J, Degroeve S, Déjardin A, Depamphilis C, Detter J, Dirks B, Dubchak I, Duplessis S, Ehlting J, Ellis B, Gendler K, Goodstein D, Gribskov M, Grimwood J, Groover A, Gunter L, Hamberger B, Heinze B, Helariutta Y, Henrissat B, Holligan D, Holt R, Huang W, Islam-Faridi N, Jones S, Jones-Rhoades M, Jorgensen R, Joshi C, Kangasjärvi J, Karlsson J, Kelleher C, Kirkpatrick R, Kirst M, Kohler A, Kalluri U, Larimer F, Leebens-Mack J, Leplé JC, Locascio P, Lou Y, Lucas S, Martin F, Montanini B, Napoli C, Nelson DR, Nelson C, Nieminen K, Nilsson O, Pereda V, Peter G, Philippe R, Pilate G, Poliakov A, Razumovskaya J, Richardson P, Rinaldi C, Ritland K, Rouzé P, Ryaboy D, Schmutz J, Schrader J, Segerman B, Shin H, Siddiqui A, Sterky F, Terry A, Tsai CJ, Uberbacher E, Unneberg P, Vahala J, Wall K, Wessler S, Yang G, Yin T, Douglas C, Marra M, Sandberg G, Peer Van de Y, Rokhsar D: The genome of Black Cottonwood, Populus trichocarpa (Torr. And Gray). Science. 2006, 313: 1596-1604.
Article
PubMed
Google Scholar
Qiu CX, Xie FL, Zhu YY, Guo K, Huang SQ, Nie L, Yang ZM: Computational identification of microRNAs and their targets in Gossypium hirsutum expressed sequence tags. Gene. 2007, 395: 49-61.
Article
PubMed
Google Scholar
Target Finder. [http://bioinfo3.noble.org/miRNA/miRU.htm]
Zhang Y: miRU: an automated plant miRNA target prediction server. Nucleic Acids Res. 2005, 33: W701-4.
Article
PubMed
PubMed Central
Google Scholar
Bartel B, Bartel DP: MicroRNAs: at the root of plant development?. Plant Physiol. 2003, 132: 709-717.
Article
PubMed
PubMed Central
Google Scholar
Basra AS, Malik CP: Dark metabolism of CO2 during fibre elongation of two cottons differing in fibre lengths. J Exp Bot. 1983, 34: 1-9.
Article
Google Scholar
Sirzen-Zelenskaya A, Zeyse J, Kapfhammer JP: Activation of class I metabotropic glutamate receptors limits dendritic growth of Purkinje cells in organotypic slice cultures. Eur J Neurosci. 2006, 24: 2978-2986.
Article
PubMed
Google Scholar
Rafalska I, Zhang Z, Benderska N, Wolff H, Hartmann AM, Brack-Werner R, Stamm S: The intranuclear localization and function of YT521-B is regulated by tyrosine phosphorylation. Hum Mol Genet. 2004, 13: 1535-1549.
Article
PubMed
Google Scholar
Baulcombe DC: Short silencing RNA: The dark matter of genetics?. Cold Spring Harbor Symposia on Quantitative Biology. 2006, 72: 13-20.
Article
Google Scholar
Smith LM, Pontes O, Searle I, Yelina N, Yousafzai FK, Herr AJ, Pikaard CS, Baulcombe DC: An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. Plant Cell. 2007, 19: 1507-1521.
Article
PubMed
PubMed Central
Google Scholar
Fahlgren N, Montgomery TA, Howell MD, Allen E, Dvorak SK, Alexander AL, Carrington JC: Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis. Curr Biol. 2006, 16: 939-944.
Article
PubMed
Google Scholar
John ME, Keller G: Characterization of mRNA for a proline-rich protein of cotton fiber. Plant Physiol. 1995, 108: 669-676.
Article
PubMed
PubMed Central
Google Scholar
Trainin T, Shmuel M, Delmer DP: In Vitro Prenylation of the Small GTPase Rac13 of Cotton. Plant Physiol. 1996, 112: 1491-1497.
PubMed
PubMed Central
Google Scholar
Pirtle RM, Yoder DW, Huynh TT, Nampaisansuk M, Pirtle IL, Chapman KD: Characterization of a palmitoyl-acyl carrier protein thioesterase (FatB1) in cotton. Plant Cell Physiol. 1999, 40: 155-163.
Article
PubMed
Google Scholar
Wanjie SW, Welti R, Moreau RA, Chapman KD: Identification and quantification of glycerolipids in cotton fibers: reconciliation with metabolic pathway predictions from DNA databases. Lipids. 2005, 40: 773-785.
Article
PubMed
Google Scholar
Qin YM, Hu CY, Pang Y, Kastaniotis AJ, Hiltunen JK, Zhu YX: Saturated very-long-chain Fatty acids promote cotton fiber and Arabidopsis cell elongation by activating ethylene biosynthesis. Plant Cell. 2007, 19: 3692-3704.
Article
PubMed
PubMed Central
Google Scholar
Qin YM, Pujol FM, Hu CY, Feng JX, Kastaniotis AJ, Hiltunen JK, Zhu YX: Gene tic and biochemical studies in yeast reveal that the cotton fibre-specific GhCER6 gene functions in fatty acid elongation. J Exp Bot. 2007, 58: 473-481.
Article
PubMed
Google Scholar
Qin YM, Pujol FM, Shi YH, Feng JX, Liu YM, Kastaniotis AJ, Hiltunen JK, Zhu YX: Cloning and functional characterization of two cDNAs encoding NADPH-dependent 3-ketoacyl-CoA reductased from developing cotton fibers. Cell Res. 2005, 15: 465-473.
Article
PubMed
Google Scholar
Wilkins TA, Jernstedt JA: Molecular genetics of developing cotton fibers. Cotton fibers. Edited by: Basra AM. 1999, New York: Hawthorne Press, 231-267.
Google Scholar
Ruan YL, Llewellyn DJ, Furbank RT: The control of single-celled cotton fiber elongation by developmentally reversible gating of plasmodesmata and coordinated expression of sucrose and K+ transporters and expansin. Plant Cell. 2001, 13: 47-63.
PubMed
PubMed Central
Google Scholar
Zhu YP, Xu KX, Luo B, Wang JW, Chen XY: An ATP-binding cassette transporter GhWBC1 from elongating cotton fibers. Plant Physiol. 2003, 133: 580-588.
Article
PubMed
PubMed Central
Google Scholar
Ruan YL, Xu SM, White R, Furbank RT: Genotypic and developmental evidence for the role of plasmodesmatal regulation in cotton fiber elongation mediated by callose turnover. Plant Physiology. 2004, 136: 4104-4113.
Article
PubMed
PubMed Central
Google Scholar
Haigler CH, Zhang DH, Wilkerson CG: Biotechnological improvement of cotton fibre maturity. Physiol Plantarum. 2005, 124: 285-294.
Article
Google Scholar
Li HB, Qin YM, Pang Y, Song WQ, Mei WQ, Zhu YX: A cotton ascorbate peroxidase is involved in hydrogen peroxide homeostasis during fibre cell development. New Phytol. 2007, 175: 462-471.
Article
PubMed
Google Scholar
Nolte KD, Hendrix DL, Radin JW, Koch KE: Sucrose synthase localization during initiation of seed development and trichome differentiation in cotton ovules. Plant Physiol. 1995, 109: 1285-1293.
PubMed
PubMed Central
Google Scholar
Pear JR, Kawagoe Y, Schreckengost WE, Delmer DP, Stalker DM: Higher plants contain homologs of the bacterial celA genes encoding the catalytic subunit of cellulose synthase. Proc Natl Acad Sci USA. 1996, 93: 12637-12642.
Article
PubMed
PubMed Central
Google Scholar
Orford SJ, Timmis JN: Specific expression of an expansin gene during elongation of cotton fibers. Biochim Biophys Acta. 1998, 1398: 342-346.
Article
PubMed
Google Scholar
Peng L, Xiang F, Roberts E, Kawagoe Y, Greve LC, Kreuz K, Delmer DP: The experimental herbicide CGA 325'615 inhibits synthesis of crystalline cellulose and causes accumulation of non-crystalline beta-1,4-glucan associated with CesA protein. Plant Physiol. 2001, 126: 981-992.
Article
PubMed
PubMed Central
Google Scholar
Van't Hof J: Increased nuclear DNA content in developing cotton fiber cells. Am J Bot. 1999, 86: 776-779.
Article
PubMed
Google Scholar
Zhang C, Guo L, Wang X, Zhang H, Shi H, Xu W, Li X: Molecular characterization of four ADF genes differentially expressed in cotton. J Genet Genomics. 2007, 34: 347-54.
Article
PubMed
Google Scholar
Lightfoot DJ, Malone KM, Timmis JN, Orford SJ: Evidence for alternative splicing of MADS-box transcripts in developing cotton fibre cells. Mol Genet Genomics. 2008, 279: 75-85.
Article
PubMed
Google Scholar
Hovav R, Udall JA, Hovav E, Rapp R, Flagel L, Wendel JF: A majority of cotton genes are expressed in single-celled fiber. Planta. 2008, 227: 319-329.
Article
PubMed
Google Scholar
Yang SS, Cheung F, Lee JJ, Ha M, Wei NE, Sze SH, Stelly DM, Thaxton P, Triplett B, Town CD, Chen ZJ: Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton. Plant J. 2006, 47: 761-775.
Article
PubMed Central
Google Scholar
Integrated DNA Technology. [http://www.idtdna.com]
National Center for Biotechnology Information. [http://www.ncbi.nlm.nih.gov/]
The Arabidopsis Information Resource. [http://www.arabidopsis.org]
Cotton Pilot Project. Accessible through: http://omics.hpcc.ttu.edu/index.php?option=com_content&task=view&id=13&Itemid=28, [https://xgi.ncgr.org/cpp/blasttool.html]
miRBase. [http://microrna.sanger.ac.uk]