Table 2 Sequences of small RNAs expressed in two or more days post anthesis period (DPA) of cotton ovule development
From: Small RNA regulation of ovule development in the cotton plant, G. hirsutumL
Group# | Sequence ID# | Sequence (5'→3') | Length (nt) | #Clo-nes | dpa | MB/GB ID |
|---|---|---|---|---|---|---|
1 | Gh-sRNA-3dpa12 | AAGAGGCUGUGUGGCUCACUGUGC | 24 | 6 | 3 | None |
| Â | Gh-sRNA-5dpq23 | AAGAGGCUGUGUGGCUCACUGUGC | 24 | 4 | 5 | Â |
2 | Gh-sRNA-3dpa19 | AGGGUGAGCGUUUGAUUGAGUUGA | 24 | 1 | 3 | None |
| Â | Gh-sRNA-4dpa6 | AGGGUGAGCGUUUGAUUGAGUUGA | 24 | 8 | 4 | Â |
3 | Gh-sRNA-3dpa 24 | UGCCCUUCAAUAUCACAAGUGC | 22 | 3 | 3 | None |
| Â | Gh-sRNA-6dpa21 | UGCCCUUCAAUAUCACAAGUGC | 22 | 3 | 6 | Â |
4 | Gh-sRNA-4dpa25 | UUGAGAAUCCUGAUGAUGUUGCAG | 24 | 1 | 4 | miR-172 |
| Â | Gh-sRNA-0dpa103 | AGAAUCUUGAUGAUGCUGCAG | 21 | 4 | 0 | Â |
| Â | Gh-sRNA-3dpa26 | AGAAUCCUGAUGAUGCUGCAG | 21 | 9 | 3 | Â |
| Â | Gh-sRNA-2dpa119 | AGAAUCCUGAUGAUGCUGCAG | 21 | 13 | 2 | Â |
5 | Gh-sRNA-3dpa29 | AAAUCGUGCCCUAACGUAUUGAGU | 24 | 1 | 3 | None |
| Â | Gh-sRNA-4dpa12 | AAAUCGUGCCCUAACGUAUUGAGU | 24 | 15 | 4 | Â |
6 | Gh-sRNA-3dpa3 | AGGUCAUGAGAGGCCCACAUGAGC | 24 | 11 | 3 | None |
| Â | Gh-sRNA-8dpa6 | AGGUCAUGAGAGGCCCACAUGAGC | 24 | 11 | 8 | Â |
7 | Gh-sRNA-3dpa4 | UUUUUCACUGUCCAAGGUAAGCCU | 24 | 5 | 3 | None |
| Â | Gh-sRNA-6dpa9 | UUUUUCACUGUCCAAGGUAAGCCU | 24 | 17 | 6 | Â |
| Â | Gh-sRNA-7dpa15 | UUUUUCACUGUCCAAGGUAAGCCU | 24 | 3 | 7 | Â |
| Â | Gh-sRNA-10dpa2 | UUUUUCACUGUCCAAGGUAAGCCU | 24 | 20 | 10 | Â |
8 | Gh-sRNA-10dpa12 | AGUGUCACGGAACAAAUGUCUUGA | 24 | 5 | 10 | None |
| Â | Gh-sRNA-4dpa2 | AGUGUCACGGAACAAAUGUCUUGAU | 25 | 12 | 4 | Â |
9 | Gh-sRNA-4dpa24 | AUCAAAGCCCAUGACAAAUGCACA | 24 | 2 | 4 | None |
| Â | Gh-sRNA-7dpa18 | AUCAAAGCCCAUGACAAAUGCACA | 24 | 1 | 7 | Â |
10 | Gh-sRNA-4dpa30 | GCACGUCUGCCUGGGUGUCACGC | 23 | 16 | 4 | 5.8S rRNA |
| Â | Gh-sRNA-2dpa105 | UCGCGUCUGCCUGGGUGUCACGC | 23 | 1 | 2 | Â |
| Â | Gh-sRNA-8dpa27 | GCACGUCUGCCUGGGUGUCACGC | 23 | 9 | 8 | Â |
| Â | Gh-sRNA-0dpa100 | CACGUCUGCCUGGGUGUCACGC | 22 | 1 | 0 | Â |
11 | Gh-sRNA-4dpa9 | AAAUGAUAGGCUUGCCCGGGUGGU | 24 | 11 | 4 | None |
| Â | Gh-sRNA-7dpa17 | AAAUGAUAGGCUUGCCCGGGUGGU | 24 | 1 | 7 | Â |
12 | Gh-sRNA-2dpa38 | AACCUGCAUCUCCACCUUAUUAUU | 24 | 8 | 2 | None |
| Â | Gh-sRNA-5dpa02 | AACCUGCAUCUCCACCUUAUUAUU | 24 | 2 | 5 | Â |
| Â | Gh-sRNA-1dpa9 | AACCUGCAUCUCCACCUUAUUAUU | 24 | 3 | 1 | Â |
13 | Gh-sRNA-2dpa104 | GAGCCAAAAUGAGAUAGAUAAGC | 23 | 1 | 2 | None |
| Â | Gh-sRNA-5dpa31 | CAAAAUGAGAUAGAUAAGCUGAA | 23 | 3 | 5 | Â |
14 | Gh-sRNA-7dpa23 | AAGCUCAGGAGGGAUAGCGCC | 21 | 2 | 7 | miR-390 |
| Â | Gh-sRNA-1dpa84 | AAGCUCAGGAGGGAUAGCGCC | 21 | 4 | 1 | Â |
| Â | Gh-sRNA-0dpa104 | AAGCUCGGGAGGGAUAGCGCC | 21 | 1 | 0 | Â |
| Â | Gh-sRNA-2dpa126 | AAGCUCAGGAGGGAUAGCGCC | 21 | 1 | 2 | Â |
15 | Gh-sRNA-2dpa30 | GAUCGACCCGAUUUAAGCAACGAA | 24 | 2 | 2 | None |
| Â | Gh-sRNA-0dpa12 | GAUCGACCCGAUU-AAGCAACGAAC | 24 | 2 | 0 | Â |