Kshama G, Mahanta JC, Deole AL, Kantharaju BM: Raw silk production: 2007–08. Indian Silk. 2008, 47: 43-44.
Google Scholar
Khurana P, Checker VG: The advent of genomics in mulberry and perspectives for productivity enhancement. Plant Cell Rep. 2011, 30: 825-838. 10.1007/s00299-011-1059-1.
Article
PubMed
CAS
Google Scholar
Zietjiewicz E, Rafalski A, Labuda D: Genome fingerprinting by simple sequence repeat (SSR) – anchored polymerase chain reaction amplification. Genomics. 1994, 20: 176-183. 10.1006/geno.1994.1151.
Article
Google Scholar
Prevost A, Wilkinson MJ: A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor Appl Genet. 1999, 98: 107-112. 10.1007/s001220051046.
Article
CAS
Google Scholar
Gepts P: The use of molecular and biochemical markers in crop evolution studies. Evol. Biol. 1993, 27: 51-94.
Article
Google Scholar
Mathithumilan B, Dandin SB: Genetic analysis of diploid and colchi-tetraploid mulberry (Morus indica and Morus alba) by molecular and morphological markers. Int J Plant Breed. 2008, 3: 58-64.
Google Scholar
Vijayan K, Chatterjee SN: ISSR profiling of Indian cultivars of mulberry (Morus spp.) and its relevance to breeding programs. Euphytica. 2003, 131: 53-63. 10.1023/A:1023098908110.
Article
CAS
Google Scholar
Vijayan K, Srivastava PP, Awasthi AK: Analysis of phylogenetic relationship among five mulberry (Morus) species using molecular markers. Genome. 2004, 47: 439-448. 10.1139/g03-147.
Article
PubMed
CAS
Google Scholar
Awasthi AK, Nagaraja GM, Naik GV, Sriramana K, Thangavelu K, Nagaraju J: Genetic diversity and relationships in mulberry (Genus Morus) as revealed by RAPD and ISSR marker assays. BMC Genet. 2004, 5: 1-18.
Article
PubMed
PubMed Central
Google Scholar
Beckmann JS, Soller M: Toward a unified approach to genetic mapping of eukaryotes based on sequence tagged microsatellite sites. Bio Tech. 1990, 8: 930-932. 10.1038/nbt1090-930.
Article
CAS
Google Scholar
Tautz D, Renz M: Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucl Acid Res. 1984, 25: 4127-38.
Article
Google Scholar
Bhat PR, Krishnakumar V, Hendre PS, Rajendrakumar P, Varshney RK, Aggarwal RK: Identification and characterization of expressed sequence tags-derived simple sequence repeats markers from robusta coffee variety ‘CxR’ (an interspecific hybrid of Coffea canephora x Coffeacongensis). Mol Ecol Notes. 2005, 5: 80-83. 10.1111/j.1471-8286.2004.00839.x.
Article
CAS
Google Scholar
McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K, Walton M, Fu B, Maghirang R, Li Z, Xing Y, Zhang Q, Kono I, Yano M, Fjellstrom R, De Clerck G, Schneider D, Cartinhour S, Ware D, Stein L: Development and Mapping of 2240 New SSR Markers for Rice (Oryza sativa L.). DNA Res. 2002, 9: 199-207. 10.1093/dnares/9.6.199.
Article
PubMed
CAS
Google Scholar
Abbott AG, Sosinski BM, Gannavarapu LD, Hager LE, Beck GJ, King CD, Ryder S, Rajapakse WV, Baird RE, Ballard : Characterization of microsatellite markers in peach (Prunuspersica (L.) Batsch). Theor Appl. Genet. 2000, 101: 421-428. 10.1007/s001220051499.
Article
Google Scholar
Mookerjee S, Guerin J, Collins G, Ford C, Sedgley M: Paternity analysis using microsatellite markers to identify pollen donors in an olive grove. Theor Appl Genet. 2005, 111: 1174-1182. 10.1007/s00122-005-0049-5.
Article
PubMed
CAS
Google Scholar
Giraldo E, Viruel MA, Opez-Corrales ML, Hormaza JI: Characterization and cross-species transferability of microsatellites in the common fig (Ficus carica L.). J Hort Sci Biotechnol. 2005, 80: 217-224.
CAS
Google Scholar
Aggarwal RK, Udaykumar D, Hendre PS, Sarkar A, Singh LI: Isolation and characterization of six novel microsatellite markers for mulberry (Morus indica). Mol Ecol Notes. 2004, 4: 477-479. 10.1111/j.1471-8286.2004.00718.x.
Article
CAS
Google Scholar
Zhao W, Miao X, Jia S, Pan Y, Huang Y: Isolation and characterization of microsatellite loci from the mulberry, Morus L. Plant Science. 2005, 168: 519-525. 10.1016/j.plantsci.2004.09.020.
Article
CAS
Google Scholar
Khurana P, Khurana JP, Ravi V, Lal S: Repertoire of leaf expressed sequence tags (ESTs) and partial characterization of stress-related and membrane transporter genes from mulberry(Morus indica L.). Tree Genet Genomes. 2009, 5 (2): 359-374. 10.1007/s11295-008-0192-7.
Article
Google Scholar
Gulyani V, Khurana P: Identification and expression profiling of drought-regulated genes in mulberry (Morus sp.) by suppression subtractive hybridization of susceptible and tolerant cultivars. Tree Genet Genomes. 2011, 7: 725-738. 10.1007/s11295-011-0369-3.
Article
Google Scholar
Checker VG, Saeed B, Khurana P: Analysis of expressed sequence tags from mulberry (Morus indica) roots and implications for comparative transcriptomics and marker identification. Tree Genet Genomes. 2012, 8: 1437-1450. 10.1007/s11295-012-0531-6.
Article
Google Scholar
Li Y, Korol AB, Fahima T, Beiles A, Nevo E: Microsatellites within genes: structure, function, and evolution. Mol Biol Evol. 2004, 6: 991-1007.
Article
Google Scholar
Lagercrantz U, Ellegren H, Andersson L: The abundance of various polymorphic SSR motifs differs between plants and vertebrates. Nucl Acid Res. 1993, 21: 1111-1115. 10.1093/nar/21.5.1111.
Article
CAS
Google Scholar
Morgante M, Olivieri AM: PCR-amplified SSRs as markers in plant genetics. Plant J. 1993, 3: 175-182. 10.1111/j.1365-313X.1993.tb00020.x.
Article
PubMed
CAS
Google Scholar
Wang Z, Weber JL, Zhong G, Tanksley SD: Survey of plant short tandem DNA repeats. Theor Appl Genet. 1994, 88: 1-6.
PubMed
CAS
Google Scholar
Liu BH: Statistical Genomics: In Linkage Mapping and QTL Analysis. Boca Raton: CRC Press, FA: 1997.
Google Scholar
Edwards KJ, Barker JHA, Daly A, Jones C, Karp A: Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques. 1996, 20: 758-760.
PubMed
CAS
Google Scholar
Zane L, Bargelloni L, Patarnello T: Strategies for microsatellite isolation: a review. Mol Ecol. 2002, 11: 1-16. 10.1046/j.0962-1083.2001.01418.x.
Article
PubMed
CAS
Google Scholar
Ferguson ME, Burow MD, Schultz SR, Bramel PJ, Paterson AH, Kresovich S, Mitchell S: Microsatellite identification and characterization in peanut (A. hypogaea L.). Theor Appl Genet. 2004, 108: 1064-1070. 10.1007/s00122-003-1535-2.
Article
PubMed
CAS
Google Scholar
He G, Meng R, Newman M, Gao G, Pittman RN, Prakash CS: Microsatellites as DNA markers in cultivated peanut (Arachis hypogaea L.). BMC Plant Biol. 2003, 3: 3-9. 10.1186/1471-2229-3-3.
Article
PubMed
PubMed Central
Google Scholar
Jung S, Abbott A, Jesudurai C, Tomkins J, Main D: Frequency, type, distribution and annotation of simple sequence repeats in Rosaceae ESTs. Funct Integr Genomics. 2005, 5: 136-143. 10.1007/s10142-005-0139-0.
Article
PubMed
CAS
Google Scholar
Aggarwal RK, Hendre PS, Varshney RK, Bhat PR, Krishna kumar V, Singh L: Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. Theor Appl Genet. 2007, 114: 359-372. 10.1007/s00122-006-0440-x.
Article
PubMed
CAS
Google Scholar
Feng SP, Li WG, Huang HS, Wang JY, Wu YT: Development, characterization and cross-species/genera transferability of ESTSSR markers for rubber tree (Hevea brasiliensis). Mol Breed. 2009, 23: 85-97. 10.1007/s11032-008-9216-0.
Article
CAS
Google Scholar
Nicot N, Chiquet V, Gandon B, Amilhat L, Legeai F, Leroy P, Bernard M, Sourdille P: Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs). Theor Appl Genet. 2004, 109: 800-805. 10.1007/s00122-004-1685-x.
Article
PubMed
CAS
Google Scholar
Gao LF, Tang JF, Li HW, Jia JZ: Analysis of microsatellites in major crops assessed by computational and experimental approaches. Mol Breed. 2003, 12: 245-261. 10.1023/A:1026346121217.
Article
CAS
Google Scholar
Moretzsohn MC, Leoi L, Proite K, Guimaraes PM, Leal-Bertioli SCM, Gimanes MA, Martin WS, Valls JFM, Grattapaglia D, Bertioli D: A microsatellite based, gene-rich linkage map for the AA genome of Arachis (Fabaceae). Theor Appl Genet. 2005, 111: 1060-1071. 10.1007/s00122-005-0028-x.
Article
PubMed
CAS
Google Scholar
Gimenes MA, Hosino AA, Barbosa AVG, Palmieri DA, Lopes CR: Characterization and transferability of microsatellite markers of cultivated peanut (Arachis hypogaea). BMC Plant Biol. 2007, 7: 9. 10.1186/1471-2229-7-9.
Article
PubMed
PubMed Central
Google Scholar
Butcher PA, Decroocq S, Gray Y, Moran GF: Development, inheritance and cross-species amplification of microsatellite markers from Acacia mangium. Theor. Appl. Genet. 2000, 101: 1282-1290. 10.1007/s001220051608.
Article
CAS
Google Scholar
De Wiel CV, Arens P, Vosman B: Microsatellite retrieval in lettuce (Lactuca sativa L.). Genome. 1998, 42: 139-150.
Article
Google Scholar
Cuc LM, Mace ES, Crouch JH, Quang VD, Long TD, Varshney R: Isolation and characterization of novel microsatellite markers and their application for diversity assessment in cultivated groundnut (Arachis hypogaea). BMC Plant Biol. 2008, 8: 55. 10.1186/1471-2229-8-55.
Article
PubMed
PubMed Central
Google Scholar
Weber JL: Informativeness of human (dC-dA)n (dG-dT)n polymorphism. Genomics. 1990, 7: 524-530. 10.1016/0888-7543(90)90195-Z.
Article
PubMed
CAS
Google Scholar
Hopkins MS, Casa AM, Wang T, Mitchell SE, Dean RE, Kochertgandkresovich S: Discovery and characterization of polymorphic simple sequence repeats (SSRs) in peanut. Crop Sci. 1999, 39: 1243-1247. 10.2135/cropsci1999.0011183X003900040047x.
Article
CAS
Google Scholar
Scotti I, Vendramin GG, Matteotti LS, Scarponi C, Sari-Gorla M, Binelli G: Postglacial recolonization routes for Piceaabies K. in Italy as suggested by the analysis of sequence-characterized amplified region (SCAR) markers. Mol Ecol. 2000, 9: 699-708. 10.1046/j.1365-294x.2000.00911.x.
Article
PubMed
CAS
Google Scholar
Cordeiro GM, Casu R, McIntyre CL, Manners JM, Henry RJ: Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to Erianthus and Sorghum. Plant Sci. 2001, 160: 1115-1123. 10.1016/S0168-9452(01)00365-X.
Article
PubMed
CAS
Google Scholar
Metzgar D, Bytof J, Wills C: Selection against frame shift mutations limits microsatellite expansion in coding DNA. Genome Research. 2000, 10: 72-80.
PubMed
CAS
PubMed Central
Google Scholar
Morgante M, Hanafey M, Powell W: Microsatellites are preferentially associated with non-repetitive DNA in plant genomes. Nat. Genet. 2002, 30: 194-200. 10.1038/ng822.
Article
PubMed
CAS
Google Scholar
Wang Y, Kang M, Huang M: Microsatellite Loci Transferability in Chestnut. J Amer Soc Hort Sci. 2008, 133: 692-700.
Google Scholar
Marcotte EM, Pellegrini M, Yeates TO, Eisenberg D: A census of protein repeats. J Mol Biol. 1999, 293: 151-160. 10.1006/jmbi.1999.3136.
Article
PubMed
CAS
Google Scholar
Wren JD, Forgacs E, Fondon JW, Pertsemlidis A, Cheng SY: Repeat polymorphisms within gene regions: Phenotypic and evolutionary implications. Am J Human Genet. 2000, 67: 345-356. 10.1086/303013.
Article
CAS
Google Scholar
Vinoda KS: Identification of QTLs conditioning water use efficiency and associated traits in mulberry though marker assisted selection. PhD thesis:2010.
Google Scholar
Varshney RK, Graner A, Sorrells ME: Genic microsatellite markers in plants: Features and applications. Tren biotech. 2005, 23: 48-55. 10.1016/j.tibtech.2004.11.005.
Article
CAS
Google Scholar
Grattapaglia D, Plomion C, Krist M, Sedroff R: Genomics of growth traits in forest tress. Curr Opin Plant Biol. 2009, 12: 1-9. 10.1016/j.pbi.2008.12.005.
Article
Google Scholar
Zhao WG, Zhou ZH, Miao XX, Zhang Y, Wang SB, Huang JH, Xiang H, Pan YL, Huang YP: A comparison of genetic variation among wild and cultivated Morus species (Moraceae: Morus) as revealed by ISSR and SSR markers. Biodiv Conserv. 2007, 6: 275-290.
Google Scholar
Kalinowski ST: Counting alleles with rarefaction: private alleles and hierarchical sampling designs. Conser Genet. 2004, 5: 539-543.
Article
CAS
Google Scholar
Gupta PK, Rustgi S, Sharma S, Singh R, Kumar N, Balyan HS: Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics. 2003, 270: 315-323. 10.1007/s00438-003-0921-4.
Article
PubMed
CAS
Google Scholar
Datwyler SL, Weiblen GD: On the origin of the Fig: Phylogenetic relationships of Moraceae from NDHF sequences. Am J Bot. 2004, 5: 767-777.
Article
Google Scholar
Leitch IJ, Chase MW, Bennett MD: Phylogenetic analysis of DNA C-values provides evidence for a small ancestral genome size in flowering plants. Annal Bot. 1998, 82: 85-94.
Article
CAS
Google Scholar
Saghaimaroof MA, Solima KM, Jorgenson RA, Allard RW: Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proceed Nat Acad Sci. 1984, 81: 8014-8018. 10.1073/pnas.81.24.8014. USA
Article
CAS
Google Scholar
Chomczynski P, Sacchi N: Single-step method of RNA isolation by acid guanidiniumthiocyanate-phenol-chloroform extraction. Anal Biochem. 1987, 162: 156-9.
Article
PubMed
CAS
Google Scholar
Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Met Mol Biol. 2000, 132: 365-386.
CAS
Google Scholar
Ausubel FM, Brent R, Kingston RE, Moore DD, Seidmann JG, Smith JA, Struhl E: (Eds): Current protocols in molecular biology volume 3. New York: John Wiley and Sons:2003:
Google Scholar
Liu K, Muse SV: Power Marker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005, 21: 2128-2129. 10.1093/bioinformatics/bti282.
Article
PubMed
CAS
Google Scholar
Perrier X, Flori A, Bonnot F: Data analysis methods. In Genetic diversity of cultivated tropical plants. Edited by: Hamon P, Seguin M, Perrier X, Glaszmann JC. 2003, Enfield: Science Publishers, Montpellier, 43-76.
Google Scholar