Sl no | Primer name | Primer sequence | GenBank-ID | Amplicon size | Repeat motif | Ta (0°C) | Repeat type |
---|---|---|---|---|---|---|---|
1 | MESTSSR10F | CATTGCACATTGCAGGTAGC | GT629469.1 | 237 | GTT | 52.8 | Perfect |
MESTSSR10R | CGGCCATCCAAAATGTTGTTC | ||||||
2 | MESTSSR13F | TCTATCTCAACCGGAAGTCC | GT628644.1 | 230 | (CAAAAG)G(AAAATA) | 54.8 | interrupted |
MESTSSR13R | CCAATTTGCTCGTCTTATGC | ||||||
3 | MESTSSR14F | CGGCCACAGGTACTTTC | GT628768.1 | 202 | TTGATT | 50.4 | Perfect |
MESTSSR14R | GGCAGCGATTTAGGATTGG | ||||||
4 | MESTSSR20F | CGCAAGTGTCTCAACTG | GT629110.1 | 200 | TGA | 49.1 | Perfect |
MESTSSR20R | GGAACGGATGGAGTAAG | ||||||
5 | MESTSSR23F | GGCCCAAACTCCATAGC | ES448350.1 | 202 | TAC | 50.4 | Perfect |
MESTSSR23R | CCGCCAATTCTAGACCAATG | ||||||
6 | MESTSSR26F | CGTGATTACCTTCGGATTGG | ES448391.1 | 219 | AGCTGG | 57.9 | Perfect |
MESTSSR26R | CCAACCCAGTAGACCCAGTG | ||||||
7 | MESTSSR27F | CCAACATTATCCGGAACACC | ES448394.1 | 266 | CGG | 54.8 | Perfect |
MESTSSR27R | GGTAAAGCCATCCGTTGC | ||||||
8 | MESTSSR28F | GCCCAGTTTCCCACAGAA | ES448403.1 | 217 | ATA | 47.9 | Perfect |
MESTSSR28R | GGATGGTTTGTGCGTGC | ||||||
9 | MESTSSR31F | CACCAATTAAAAGCGCAGTG | ES448813.1 | 204 | GA | 57.9 | Perfect |
MESTSSR31R | CTTTGTGGTTGGCTCGTG | ||||||
10 | MESTSSR35F | CGTTTTCCGCTTCAGAGAG | ES448478.1 | 206 | AG | 54.8 | Perfect |
MESTSSR35R | GCCGATATCCTCCTTTCCTC | ||||||
11 | MESTSSR37F | CAAAAGCGGTTTGGAATAGC | ES448476.1 | 245 | (CTTTC) CTCC(T) | 54.8 | interrupted |
MESTSSR37R | CCTCAACACAAAACCCACC | ||||||
12 | MESTSSR40F | GAATCCTACAAGGGAGC | ES449069.1 | 215 | AAAAT | 52.8 | Perfect |
MESTSSR40R | CATACAAGGATGCCCACC | ||||||
13 | MESTSSR41F | GGTCGACAAGAGGTAATC | ES449022.1 | 121 | AAAAG | 56.7 | Perfect |
MESTSSR41R | GAAGGCACCGAAGAGAAC | ||||||
14 | MESTSSR42F | CAAGAGGTAATCCGTTC | ES448502.1 | 254 | AG | 54.8 | Perfect |
MESTSSR42R | CGTTGTTAGCAGGAGC | ||||||
15 | MESTSSR46F | GCCCATGTTTGCGGAG | ES449184.1 | 200 | AG | 56.7 | Perfect |
MESTSSR46R | GGATTTTTCTGTCTGGGTG | ||||||
16 | MESTSSR47F | GACTGCGGGAGAACAG | ES448510.1 | 220 | CTC | 54.8 | Perfect |
MESTSSR47R | GTTCACCGAGGCTGAGAG | ||||||
17 | MESTSSR48F | GTTGTGGTGGTTGTTGC | ES448516.1 | 201 | TC | 56.7 | Perfect |
MESTSSR48R | CCTTCACTTTCTCGCC | ||||||
18 | MESTSSR49F | CTTCGACGCCTTCTGCG | ES448598.1 | 184 | GAAGA | 56.7 | Perfect |
MESTSSR49R | GAGCGTCTCGAAGCAGTTG | ||||||
19 | MESTSSR50F | GCCGGCATGTACGGATA | ES448967.1 | 235 | CCTAAC | 54.8 | Perfect |
MESTSSR50R | GTAAAAGTTTCGCCCCAGG | ||||||
20 | MESTSSR51F | CCTAGGGTTTCCTTCGCTTC | ES448621.1 | 223 | GCG | 54.8 | Perfect |
MESTSSR51R | CGCTTAGGCTCCTTCCTC | ||||||
21 | MESTSSR52F | CTTCGTTACGCTCGCTATG | ES448640.1 | 261 | TATTTT | 56.7 | Perfect |
MESTSSR52R | CCTTCTCTCAAGAATACTGG | ||||||
22 | MESTSSR53F | GGCCAACATGTACGGATAG | ES449078.1 | 203 | CCTAAC | 56.7 | Perfect |
MESTSSR53R | CGCCAGGTACAACAAGAAG | ||||||
23 | MESTSSR56F | CATTGCGTTCCTTGAG | ES448442.1 | 220 | ATCATG | 58.8 | Perfect |
MESTSSR56R | GGAGCCAAGACTCCTAAG | ||||||
24 | MESTSSR59F | GAGCTCCGACGACCAC | ES448462.1 | 236 | TCATGA | 54.8 | Perfect |
MESTSSR59R | GCGTCTCGACGTGAGAAATAAC | ||||||
25 | MESTSSR61F | CCATAGCCTCAACGTTTC | ES448534.1 | 239 | AAAAAC | 54.8 | Perfect |
MESTSSR61R | CGCTCACGTCCGTATC | ||||||
26 | MESTSSR66F | GGAAAATTCATCCCCCAAGC | ES448761.1 | 258 | TTTTTG | 53.8 | Perfect |
MESTSSR66R | CGATGAGAAGCTCAAGGAG | ||||||
27 | MESTSSR67F | GTGCTCGTAGCTTTGATGG | ES448763.1 | 215 | ATCGCC | 54.8 | Perfect |
MESTSSR67R | GCGAAGGAGAAGGAGGAGAG | ||||||
28 | MESTSSR73F | CTCAAGCTATGCATCCAACGC | ES448909.1 | 237 | CT | 52.8 | Perfect |
MESTSSR73R | CCACTTCGAGAGCTTCG | ||||||
29 | MESTSSR74F | CCATGGCTGAGCACGAG | ES448909.1 | 238 | GAA, GAG | 52.8 | compound |
MESTSSR74R | GAGCTCCAGTGTTCCTC | ||||||
30 | MESTSSR76F | GATCCAGAACTCCCAAACC | ES448912.1 | 209 | CTCCGT | 50.4 | Perfect |
MESTSSR76R | GGTAATCCGAGTTCGAGACG | ||||||
31 | MESTSSR77F | CCATAGCCTCAACGTTTC | ES448915.1 | 238 | AAAAAC | 52.8 | Perfect |
MESTSSR77R | CGCTCACGTCCGTATC | ||||||
32 | MESTSSR78F | GCACTCTCAAACAAATCCTC | ES448921.1 | 242 | AAGTGG | 52.8 | Perfect |
MESTSSR78R | CGTTTGGAAACGGCTACTTC | ||||||
33 | MESTSSR79F | CCCATAGCCTCAACGTTTC | ES448926.1 | 221 | AAAAAC | 45.9 | Perfect |
MESTSSR79R | CGACAACAACCGTCAAGTC | ||||||
34 | MESTSSR85F | GTCATCTATGTCGGGTGGTC | ES448670.1 | 310 | ATACAT | 55.4 | Perfect |
MESTSSR85R | CATGGAGCGTTTGTTGTGTG | ||||||
35 | MESTSSR99F | GGCCAACATGTACGGATAG | ES448967.1 | 203 | CCTAAC | 50.4 | Perfect |
MESTSSR99R | CGCCAGGTACAACAAGAAG | ||||||
36 | MESTSSR108F | GGCTCTGAATGTCCGAGAAG | ES448289.1 | 246 | GAGTTG | 50.4 | Perfect |
MESTSSR108R | GGGTGGTAGATTTGGCAC | ||||||
37 | MESTSSR109F | CTCACGTCCGTATCATCG | ES448314.1 | 244 | TTTGTT | 50.4 | Perfect |
MESTSSR109R | CCATTCCCATAGCCTCAAC | ||||||
38 | MESTSSR111F | CATCTATGTCGGGTGGTCG | ES449122.1 | 299 | AAAT | 45.9 | Perfect |
MESTSSR111R | CTATGCACAACAGGCTGC | ||||||
39 | MESTSSR113F | GCCTCCCATTATGCACTATG | ES449132.1 | 206 | AAAACA | 52.8 | Perfect |
MESTSSR113R | CGGATCTTCCAGGCTC | ||||||
40 | MESTSSR115F | CAGGAATCAGAGCCAGAGC | ES448647.1 | 398 | AAAAAC | 53.8 | Perfect |
MESTSSR115R | CTGGACCATGTGGAAGC | ||||||
41 | MESTSSR117F | CATTATCCGGAACACCAGACG | ES448396.1 | 247 | CGG | 53.8 | Perfect |
MESTSSR117R | GCTAAGAACCTCGCTCG | ||||||
42 | MESTSSR121F | CACGTCCGTATCATCGG | ES449197.1 | 244 | TTTGTT | 52.8 | Perfect |
MESTSSR121R | CCATTCCCATAGCCTCAAC | ||||||
43 | MESTSSR129F | GATTACTCCAACCAACTCC | ES449040.1 | 223 | AAAACC | 52.8 | Perfect |
MESTSSR129R | CAAGGGGGCTAGGAAG | ||||||
44 | MESTSSR123F | CATCTATGTCGGGTGGTCG | ES448449.1 | 240 | CT | 52.8 | Perfect |
MESTSSR123R | GTGTTTGCTGGACTTTGC | ||||||
45 | MESTSSR126F | CACCGATGAGCCCTGGTC | ES448693.1 | 200 | TTC | 52.8 | Perfect |
MESTSSR126R | GCACAATCCATCCCAAGTG | ||||||
46 | MESTSSR127F | CCAACATTATCCGGAACACC | ES448594.1 | 285 | CGG | 52.8 | Perfect |
MESTSSR127R | CCTGGACGGAAGAAGTGG | ||||||
47 | MESTSSR131F | CCTCATTGCGTTCCTTGAG | ES448442.1 | 225 | ATA, ATCATG | 54.1 | compound |
MESTSSR131R | CTGATTTGGGAGCCAAGAC | ||||||
48 | MESTSSR132F | CTATGTCGGGTGGTCG | GT735086.1 | 473 | TTTTCC | 54.1 | Perfect |
MESTSSR132R | CATACCGTCGGAGATGC | ||||||
49 | MESTSSR136F | CCATTCCCATAGCCTC | ES449178.1 | 244 | AAAAAC | 50.5 | Perfect |
MESTSSR136R | CGTCCGTATCATCGG | ||||||
50 | MESTSSR134F | GGTTGTTGTCGAATCCG | ES448600.1 | 208 | TTTGTT | 55.4 | Perfect |
MESTSSR134R | GTACAAACCGAACGGGAAC | ||||||
51 | MESTSSR135F | CCTCATTGCGTTCCTTG | ES448442.1 | 219 | ATCATG | 54.1 | Perfect |
MESTSSR135R | CCGGTGAGGTGATTGG |