Harlan HV. Some distinctions in our cultivated barleys with reference to their use in plant breeding. US Dept Agric Bul (Bulletin of the US Department of Agriculture). 1914;137:38.
Google Scholar
Aastrup S, Outtrup H, Erdal K. Location of the proanthocyanidins in the barley grain. Carlsb Res Commun. 1984;49:105–9.
Article
CAS
Google Scholar
Britton G. The biochemistry of natural pigments. Cambridge: Cambridge University Press; 1983.
Google Scholar
Jana BK, Mukherjee SK. Notes on the distribution of phytomelanin layer in higher plants – a short communication. J Pharm Biol. 2014;4:131–2.
Google Scholar
Franckowiak JD, Lundqvist U. BGS 203. Barley Genet Newsl. 1997;26:209.
Google Scholar
Buckley GFH. Inheritance in barley with special reference to the color of the caryopsis and lemma. Sci Agric. 1930;10:460–92.
Google Scholar
Robertson DW, Wiebe GA, Shands RG, Hagberg A. A summary of linkage studies in cultivated barley, Hordeum species. Crop Sci. 1965;5(Suppl 3):33–43. 1954-1963
Article
Google Scholar
Woodward RW. Inheritance of melanin-like pigment in the glumes and caryopses of barley. J Agric Res. 1941;63:21–8.
Google Scholar
Woodward RW. Linkage relationships between the allelomorphic series, B, Bmb, Bg, and Atat factors in barley. J Amer Soc Agron. 1942;34:659–61.
Article
Google Scholar
Takahashi R. Genetic features of east Asian barleys. In: Yasuda S, Konishi T, editors. Barley genetics V. Proc. fifth Int. barley genetics Symp. (Okayama;1986). Okayama: Okayama. Sanyo Press Co; 1987. p. 7–20.
Google Scholar
Ceccarelli S, Grando S, van Leur JAG. Genetic diversity in barley landraces from Syria and Jordan. Euphytica. 1987;36:389–405.
Article
Google Scholar
Weltzien E. Evaluation of barley (Hordeum vulgare L) landrace populations originating from different growing regions in the near east. Plant Breed. 1988;101:95–106.
Article
Google Scholar
Bishaw Z, Struik PC, van Gastel AJG. Wheat and barley seed system in Syria: farmers, varietal perceptions, seed sources and seed management. Int J Plant Prod. 2011;5:323–47.
Google Scholar
Zhou X, Chao M, Liang X. Screening and testing of barley varieties for scab resistance (in Chinese with English abstract). Acta Phytophylacica Sinica. 1991;18:261–5.
Google Scholar
Choo TM. Breeding barley for resistance to fusarium head blight and mycotoxin accumulation. Plant Breed Rev. 2006;26:125–69.
Google Scholar
Choo TM, Vigier BJ, Savard ME, Blackwell BA, Martinn RA, Wang JM, Yang J, Abdel-Aal ESM. Black barley as a means of mitigating deoxynivalenol contamination. Crop Sci. 2015;55:1096–103.
Article
CAS
Google Scholar
Loskutov IG, Blinova EV, Gavrilova OP, Gagkaeva TY. The valuable characteristics of oats genotypes and resistance to Fusarium disease. Vavilov Zh Genet Selekt. 2016;20:286–94.
Google Scholar
Kim MJ, Hyun JN, Kim JA, Park JC, Kim MY, Kim JG, Lee SJ, Chun SC, Chung IM. Relationship between phenolic compounds, anthocyanins content and antioxidant activity in colored barley germplasm. J Agric Food Chem. 2007;55:4802–9.
Article
CAS
PubMed
Google Scholar
Siebenhandl S, Grausgruber H, Pellegrini N, Del Rio D, Fogliano V, Pernice R, Berghofer E. Phytochemical profile of main antioxidants in different fractions of purple and blue wheat, and black barley. J Agric Food Chem. 2007;55:8541–7.
Article
CAS
PubMed
Google Scholar
Shoeva OY, Mock H-P, Kukoeva TV, Börner A, Khlestkina EK. Regulation of the flavonoid biosynthesis pathway genes in purple and black grains of Hordeum vulgare. PLoS One. 2016;11:e0163782.
Article
PubMed
PubMed Central
Google Scholar
Varga M, Berkesi O, Darula Z, May NV, Palágyi A. Structural characterization of allomelanin from black oat. Phytochemistry. 2016;130:313–20.
Article
CAS
PubMed
Google Scholar
Mayer AM. Polyphenol oxidases in plants and fungi: going places? A review. Phytochemistry. 2006;67:2318–31.
Article
CAS
PubMed
Google Scholar
Sullivan ML. Beyond Brown: Polyphenol oxidases as enzymes of plant specialized metabolism. Frontiers Plant Sci. 2014;5:783.
Google Scholar
Khlestkina EK, Pshenichnikova TA, Röder MS, Arbuzova VS, Salina EA, Börner A. Comparative mapping of genes for glume colouration and pubescence in hexaploid wheat (Triticum aestivum L.). Theor Appl Genet. 2006;113:801–7.
Article
CAS
PubMed
Google Scholar
Khlestkina EK, Salina EA, Pshenichnikova TA, Röder MS, Börner A. Glume coloration in wheat: allelism test, consensus mapping and its association with specific microsatellite allele. Cereal Res Commun. 2009;37:37–43.
Article
CAS
Google Scholar
Khlestkina EK. Regulatory-target gene relationships in allopolyploid and hybrid genomes. In: Urbano KV, editor. Advances in genetics research, vol. 3. USA: NOVA Science Publishers, Inc; 2010. p. 311–28.
Google Scholar
Rice-Evans C, Miller N, Paganga G. Antioxidant properties of phenolic compounds. Trends Plant Sci. 1997;2:152–9.
Article
Google Scholar
Shahidi F, Naczk M. Phenolics in food and Nutraceuticals. Florida: CRC Press LLC; 2004.
Google Scholar
Graf E. Antioxidant potential of ferulic acid. Free Radic Biol Med. 1992;13(4):435–48.
Article
CAS
PubMed
Google Scholar
Gunnaiah R, Kushalappa AC, Duggavathi R, Fox S, Somers DJ. Integrated metabolo-proteomic approach to decipher the mechanisms by which wheat QTL (Fhb1) contributes to resistance against Fusarium graminearum. PLoS One. 2012;7:e40695.
Article
CAS
PubMed
PubMed Central
Google Scholar
Siegele DA. Universal stress proteins in Escherichia coli. J Bacteriol. 2005;187:6253–4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Franckowiak JD, Foster AE, Pederson VD, Pyler RE. Registration of Bowman barley. Crop Sci. 1985;25:883.
Article
Google Scholar
Plaschke J, Ganal MW, Röder MS. Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor Appl Genet. 1995;91:1001–7.
CAS
PubMed
Google Scholar
Ramsay L, Macaulay M, Degli Ivanissivich S, MacLean K, Cardle L, Fuller J, Edwards K, Tuvensson S, Morgante M, Massari A, Maesti E, Marmiroli N, Sjakste T, Ganal M, Powell W, Waugh R. A simple sequence repeat-based linkage map of barley. Genetics. 2000;156:1997–2005.
CAS
PubMed
PubMed Central
Google Scholar
Li JZ, Sjakste TG, Röder MS, Ganal MW. Development and genetic mapping of 127 new microsatellite markers in barley. Theor Appl Genet. 2003;107:1021–7.
Article
CAS
PubMed
Google Scholar
Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier M-H, Leroy P, Ganal MW. A microsatellite map of wheat. Genetics. 1998;149:2007–23.
PubMed
PubMed Central
Google Scholar
Schmieder R, Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics. 2011;27:863–4.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol. 2013;14:R36.
Article
PubMed
PubMed Central
Google Scholar
Langmead B, Salzberg S. Fast gapped-read alignment with bowtie 2. Nat Methods. 2012;9:357–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Tanscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotech. 2010;28:511–5.
Article
CAS
Google Scholar
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;7:621–8.
Article
Google Scholar
Trapnell K, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. Tanscript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology. 2010;28:511–5.
Robinson M, McCarthy D, Smyth G. EdgeR: a bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics. 2010;26:139–40.
Article
CAS
PubMed
Google Scholar
Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC Bioinformatics. 2009;10:421.
Article
PubMed
PubMed Central
Google Scholar
Zhou D, Xin Z, Yi L, Zhang Z, Zhen S. agriGO: a GO analysis toolkit for the agricultural community. Nucl Acids Res. 2010;68:64–70.
Google Scholar
Himi E, Nisar A, Noda K. Colour genes (R and Rc) for grain and coleoptile upregulate flavonoid biosynthesis genes in wheat. Genome. 2005;48:747–54.
Article
CAS
PubMed
Google Scholar