Vázquez-Lobo A, Roujol D, Zúñiga-Sánchez E, Albenne C, Pinero D, Gamboa-deBuen A, Jamet E: The highly conserved spermatophyte cell wall DUF642 protein family: phylogeny and first evidence of interaction with cell wall polysaccharides in vitro. Mol Phylogenet Evol. 2012, 63: 510-520. 10.1016/j.ympev.2012.02.001.
Article
PubMed
Google Scholar
Gao Y, Badejo AA, Sawa Y, Ishikawa T: Analysis of two L-galactono-1,4-lactone responsive genes with complementary expression during the development of Arabidopsis thaliana . Plant Cell Physiol. 2012, 53: 592-601. 10.1093/pcp/pcs014.
Article
CAS
PubMed
Google Scholar
Sreenivasulu N, Usadel B, Winter A, Radchuk V, Scholz U, Stein N, Weschke W, Strickert M, Close TJ, Stitt M, Graner A, Wobus U: Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools. Plant Physiol. 2008, 146: 1738-1758. 10.1104/pp.107.111781.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dekkers BJ, Pearce S, van Bolderen-Veldkamp RP, Marshall A, Widera P, Gilbert J, Drost HG, Bassel GW, Müller K, King JR, Wood AT, Grosse I, Quint M, Krasnogor N, Leubner-Metzger G, Holdsworth MJ, Bentsink L: Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. Plant Physiol. 2013, 163: 205-215. 10.1104/pp.113.223511.
Article
PubMed Central
CAS
PubMed
Google Scholar
Soeda Y, Konings MC, Vorst O, van Houwelingen AM, Stoopen GM, Maliepaard CA, Kodde J, Bino RJ, Groot SP, van der Geest AH: Gene expression programs during Brassica oleracea seed maturation, osmopriming, and germination are indicators of progression of the germination process and the stress tolerance level. Plant Physiol. 2005, 137: 354-368. 10.1104/pp.104.051664.
Article
PubMed Central
CAS
PubMed
Google Scholar
Garza-Caligaris LE, Avendaño-Vázquez AO, Alvarado-López S, Zúñiga-Sánchez E, Orozco-Segovia A, Pérez-Ruiz RV, Gamboa-deBuen A: At3g08030 transcript: a molecular marker of seed ageing. Ann Bot. 2012, 110: 1253-1260. 10.1093/aob/mcs200.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jamet E, Canut H, Bougart G, Pont Lezica RF: Cell wall proteins: a new insight through proteomics. Trends Plant Sci. 2006, 11: 33-39. 10.1016/j.tplants.2005.11.006.
Article
CAS
PubMed
Google Scholar
Tung CW, Dwyer KG, Nasrallah ME, Nasrallah JB: Genome-wide identification of genes expressed in Arabidopsis pistils specifically along the path of pollen tube growth. Plant Physiol. 2005, 138: 977-989. 10.1104/pp.105.060558.
Article
PubMed Central
CAS
PubMed
Google Scholar
Rejón JD, Delalande F, Schaeffer-Reiss C, Carapito C, Zienkiewicz K, de Dios AJ, Rodríguez-García MI, Van Dorsselaer A, Castro AJ: Proteomics profiling reveals novel proteins and functions of the plant stigma exudate. J Exp Bot. 2013, 64: 5695-5705. 10.1093/jxb/ert345.
Article
PubMed Central
PubMed
Google Scholar
Zúñiga-Sánchez E, Gamboa-deBuen A: The two DUF642 At5g11420 and At4g32460 - encoded proteins interact in vitro with the AtPME3 catalytic domain. In Protein Interaction/Book 1. Edited by Cai J, Wang RE. Rijeka: InTech Editorial; 2012. ISBN 979-953-307-5777.
Mewalal R, Mizrachi E, Mansfield SD, Myburg AA: Cell wall-related proteins of unknown function: missing links in plant cell wall development. Plant Cell Physiol. 2014, 6: 1031-1043. 10.1093/pcp/pcu050.
Article
Google Scholar
Peaucelle A, Braybrook SA, Le Guillou L, Bron E, Kuhlemeier C, Höfte H: Pectin induced changes in cell wall mechanics underlie organ initiation in Arabidopsis. Curr Biol. 2011, 21: 1720-1726. 10.1016/j.cub.2011.08.057.
Article
CAS
PubMed
Google Scholar
Müller K, Levesque-Tremblay G, Bartels S, Weitbrecht K, Wormit A, Usadel B, Haughn G, Kermode AR: Demethylesterification of cell wall pectins in Arabidopsis plays a role in seed germination. Plant Physiol. 2013, 161: 305-316. 10.1104/pp.112.205724.
Article
PubMed Central
PubMed
Google Scholar
Hongo S, Sato K, Yokoyama R, Nishitani K: Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stem. Plant Cell. 2012, 24: 2624-2634. 10.1105/tpc.112.099325.
Article
PubMed Central
CAS
PubMed
Google Scholar
Di Matteo A, Giovane A, Raiola A, Camardella L, Bonivento D, De Lorenzo G, Cervone F, Bellincampi D, Tsernoglou D: Structural basis for the interaction between pectin methylesterase an a specific inhibitor protein. Plant Cell. 2005, 17: 849-858. 10.1105/tpc.104.028886.
Article
PubMed Central
CAS
PubMed
Google Scholar
González-Carranza ZH, Elliott KA, Robert JA: Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana . J Exp Bot. 2007, 58: 3719-3730. 10.1093/jxb/erm222.
Article
PubMed
Google Scholar
Suárez C, Zienkiewicz A, Castro AJ, Zienkiewicz K, Majewska-Sawka A, Rodríguez-García MI: Cellular localization and levels of pectins and arabinogalactan proteins in olive (Olea europaea L.) pistil tissues during development: implications for pollen–pistil interaction. Planta. 2013, 237: 305-319. 10.1007/s00425-012-1774-z.
Article
PubMed
Google Scholar
Louvet R, Rayon C, Domon JM, Rusterucci C, Fournet F, Leaustic A, Crépeau MJ, Ralet MC, Rihouey C, Bardor M, Lerouge P, Gillet F, Pelloux J: Major changes in the cell wall during silique development in Arabidopsis thaliana . Phytochem. 2011, 72: 59-67. 10.1016/j.phytochem.2010.10.008.
Article
CAS
Google Scholar
Lee KJ, Dekkers BJ, Steinbrecher T, Walshs CT, Bacic A, Bentsink L, Leubner-Metzger G, Knox JP: Distinct cell wall architectures in seed endosperms in representatives of the Brassicaceae and Solanaceae. Plant Physiol. 2012, 160: 1551-1566. 10.1104/pp.112.203661.
Article
PubMed Central
CAS
PubMed
Google Scholar
Nakabayashi K, Okamoto M, Koshiba T, Kamiya Y, Nambara E: Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed. Plant J. 2005, 41: 697-709. 10.1111/j.1365-313X.2005.02337.x.
Article
CAS
PubMed
Google Scholar
Ren CH, Kermode AR: An increase in pectin methyl esterase activity accompanies dormancy breakage and germination of yellow cedar seeds. Plant Physiol. 2000, 124: 231-242. 10.1104/pp.124.1.231.
Article
PubMed Central
CAS
PubMed
Google Scholar
Weitbrecht K, Müller K, Leubner-Metzger G: First off the mark: early seed germination. J Exp Bot. 2011, 62: 3289-3309. 10.1093/jxb/err030.
Article
CAS
PubMed
Google Scholar
Kanai M, Nishimura M, Hayashi M: A peroxisomal ABC transporter promotes seed germination by inducing pectin degradation under the control of ABI5. Plant J. 2010, 62: 936-947.
CAS
PubMed
Google Scholar
Goda H, Sawa S, Asami T, Fujioka S, Shimada Y, Yoshida S: Comprehensive comparison of auxin-regulated and brassinosteroid regulated genes in Arabidopsis. Plant Physiol. 2004, 134: 1555-1573. 10.1104/pp.103.034736.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ogawa M, Hanada A, Yamauchi Y, Kuwahara A, Kamiya Y, Yamaguchi S: Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell. 2003, 15: 1591-1604. 10.1105/tpc.011650.
Article
PubMed Central
CAS
PubMed
Google Scholar
Baumann K, De Paolis A, Costantino P, Gualberti G: The DNA binding site of the Dof protein NtBBF1 is essential for tissue-specific and auxin-regulated expression of the rolB oncogene in plants. Plant Cell. 1999, 11: 323-334. 10.1105/tpc.11.3.323.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bastian R, Dawe A, Meier S, Ludidi N, Bajic VB, Gehring C: Gibberelic acid and cGMP-dependent transcriptional regulation in Arabidopsis thaliana . Plant Sign Beh. 2010, 5: 224-232. 10.4161/psb.5.3.10718.
Article
CAS
Google Scholar
Saez-Aguayo S, Ralet MC, Berger A, Botran L, Ropartz D, Marion-Poll A, North HM: PECTIN METHYLESTERASE INHIBITOR6 promotes Arabidopsis mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells. Plant Cell. 2013, 25: 308-323. 10.1105/tpc.112.106575.
Article
PubMed Central
CAS
PubMed
Google Scholar
Li J, Jiang D, Zhou H, Li F, Yang J, Hong L, Fu X, Li Z, Liu Z, Li J, Zhuang C: Expression of RNA-interference/antisense transgenes by the cognate promoters of target genes is a better gene-silencing strategy to study gene functions in rice. PLoS One. 2011, 6: e17444-10.1371/journal.pone.0017444.
Article
PubMed Central
CAS
PubMed
Google Scholar
Overvoorde P, Fukaki H, Beeckman T: Auxin control of root development. Cold Spring Harbor Perspectives in Biology: Auxin Signaling from Synthesis to Systems Biology. Edited by: Estelle M, Weijers D, Ljung K, Leyser O. 2011, Cold Spring Harbor Laboratory Press, New York
Google Scholar
Sundberg E, Ostergaard L: Distinct and dynamic auxin activities during reproductive development. Cold Spring Harbor Perspectives in Biology: Auxin Signaling from Synthesis to Systems Biology. Edited by: Estelle M, Weijers D, Ljung K, Leyser O. 2011, Cold Spring Harbor Laboratory Press, New York
Google Scholar
Lehner A, Dardelle F, Soret-Morvan O, Lerouge P, Driouich A, Mollet JC: Pectins in the cell wall of Arabidopsis thaliana pollen tube and pistil. Plant Signal Behav. 2010, 5: 1282-1285. 10.4161/psb.5.10.13040.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hewezi T, Howe P, Maier TR, Hussey RS, Mitchum MG, Davis EL, Baum TJ: Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell. 2008, 20: 3080-3093. 10.1105/tpc.108.063065.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wolf S, Mouille G, Pelloux J: Homogalacturonan methyl esterification and plant development. Mol Plant. 2009, 2: 851-860. 10.1093/mp/ssp066.
Article
CAS
PubMed
Google Scholar
Sénéchal F, Wattier C, Rustérucci C, Pelloux J: Homogalacturonan-modifying enzymes: structure, expression, and roles in plants. J Exp Bot. 2014, 65: 5125-5160. 10.1093/jxb/eru272.
Article
PubMed Central
PubMed
Google Scholar
Proseus TE, Boyer JS: Calcium pectate chemistry controls growth rate of Chara corallina . J Exp Bot. 2003, 57: 3989-4002. 10.1093/jxb/erl166.
Article
Google Scholar
Peaucelle A, Louvet R, Johansen JN, Höfte H, Laufs P, Pelloux J, Mouille G: Arabidopsis phyllotaxis is controlled by the methyl-esterification status of cell wall pectins. Curr Biol. 2008, 18: 1943-1948. 10.1016/j.cub.2008.10.065.
Article
CAS
PubMed
Google Scholar
Hepler PK, Rounds CM, Winship LJ: Control of cell wall extensibility during pollen tube growth. Mol Plant. 2013, 6: 998-1017. 10.1093/mp/sst103.
Article
PubMed Central
CAS
PubMed
Google Scholar
Wang M, Yuan D, Gao W, Li Y, Tan J, Zhang X: A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. PLoS One. 2013, 8: e72082-10.1371/journal.pone.0072082.
Article
PubMed Central
CAS
PubMed
Google Scholar
Oñate-Sánchez V, Vicente-Carbajosa J: DNA-free RNA isolation protocols for Arabidopsis thaliana, including seeds and siliques. BMC Res Notes. 2008, 1: 93-10.1186/1756-0500-1-93.
Article
PubMed Central
PubMed
Google Scholar
Pfaffl MW: A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acid Res. 2001, 29: e45-10.1093/nar/29.9.e45.
Article
PubMed Central
CAS
PubMed
Google Scholar
Clough SJ, Bent AF: Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana . Plant J. 1998, 16: 735-743. 10.1046/j.1365-313x.1998.00343.x.
Article
CAS
PubMed
Google Scholar
Harpaz‐Saad S, McFarlane HE, Xu S, Divi UK, Forward B, Western TL, Kieber JJ: Cellulose synthesis via the FEI2 RLK/SOS5 pathway and Cellulose synthase 5 is required for the structure of seed coat mucilage in Arabidopsis. Plant J. 2011, 68: 941-953. 10.1111/j.1365-313X.2011.04760.x.
Article
PubMed
Google Scholar