Nagy A, Perrimon N, Sandmeyer S, Plasterk R: Tailoring the genome: the power of genetic approaches. Nature Gen. 2003, 33 Suppl.: 276-284. 10.1038/ng1115.
Article
Google Scholar
Henikoff S, Comai L: Single-nucleotide mutations for plant functional genomics. Annual Reviews of Plant Biology. 2003, 54: 375-401. 10.1146/annurev.arplant.54.031902.135009.
Article
CAS
Google Scholar
Long D, Coupland G: Transposon tagging with Ac/Ds in Arabidopsis. Methods Mol Biol. 1998, 82: 315-328.
PubMed
CAS
Google Scholar
Waterhouse PM, Graham MW, Wang MB: Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc Natl Acad Sci USA. 1998, 95: 13959-13964. 10.1073/pnas.95.23.13959.
Article
PubMed
CAS
PubMed Central
Google Scholar
Krysan PJ, Young JC, Jester PJ, Monson S, Copenhaver G, Preuss D, Sussman MR: Characterization of T-DNA insertion sites in Arabidopsis thaliana and the implications for saturation mutagenesis. OMICS. 2002, 6: 163-174. 10.1089/153623102760092760.
Article
PubMed
CAS
Google Scholar
Lisch D: Mutator transposons. Trends Plant Sci. 2002, 7: 498-504. 10.1016/S1360-1385(02)02347-6.
Article
PubMed
CAS
Google Scholar
Bensen RJ, Johal GS, Crane VC, Tossberg JT, Schnable PS, Meeley RB, Briggs SP: Cloning and characterization of the maize An1 gene. Plant Cell. 1995, 7: 75-84. 10.1105/tpc.7.1.75.
Article
PubMed
CAS
PubMed Central
Google Scholar
May BP, Liu H, Vollbrecht E, Senior L, Rabinowicz PD, Roh D, Pan X, Stein L, Freeling M, Alexander D, Martienssen R: Maize-targeted mutagenesis: A knockout resource for maize. Proc Natl Acad Sci U S A. 2003, 100: 11541-11546. 10.1073/pnas.1831119100.
Article
PubMed
CAS
PubMed Central
Google Scholar
http://chloroplast.uoregon.edu/: . [http://chloroplast.uoregon.edu/]
Raizada MN, Nan GL, Walbot V: Somatic and germinal mobility of the RescueMu transposon in transgenic maize. Plant Cell. 2001, 13: 1587-1608. 10.1105/tpc.13.7.1587.
Article
PubMed
CAS
PubMed Central
Google Scholar
http://gremlin3.zool.iastate.edu/zmdb/RescueMu.html: .
Cowperthwaite M, Park W, Xu Z, Yan X, Maurais SC, Dooner HK: Use of the transposon Ac as a gene-searching engine in the maize genome. Plant Cell. 2002, 14: 713-726. 10.1105/tpc.010468.
Article
PubMed
CAS
PubMed Central
Google Scholar
Li X, Song Y, Century K, Straight S, Ronald P, Dong X, Lassner M, Zhang Y: A fast neutron deletion mutagenesis-based reverse genetics system for plants. Plant J. 1991, 27: 235-242. 10.1046/j.1365-313x.2001.01084.x.
Article
Google Scholar
McCallum CM, Comai L, Greene EA, Henikoff S: Targeted screening for induced mutations. Nat Biotechnol. 2000, 18: 455-457. 10.1038/74542.
Article
PubMed
CAS
Google Scholar
Colbert T, Till BJ, Tompa R, Reynolds S, Steine MN, Yeung AT, McCallum CM, Comai L, Henikoff S: High-throughput screening for induced point mutations. Plant Physiol. 2001, 126: 480-484. 10.1104/pp.126.2.480.
Article
PubMed
CAS
PubMed Central
Google Scholar
Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Young K, Taylor NE, Henikoff JG, Comai L, Henikoff S: Large-scale discovery of induced point mutations with high throughput TILLING. Genome Res. 2003, 13: 524-530. 10.1101/gr.977903.
Article
PubMed
CAS
PubMed Central
Google Scholar
Greene EA, Codomo CA, Taylor NE, Henikoff JG, Till BJ, Reynolds SH, Enns LC, Burtner C, Johnson JE, Odden AR, Comai L, Henikoff S: Spectrum of chemically induced mutations from a large-scale reverse-genetic screen in Arabidopsis. Genetics. 2003, 164: 731-740.
PubMed
CAS
PubMed Central
Google Scholar
Till BJ, Burtner C, Comai L, Henikoff S: Mismatch cleavage by single-strand specific nucleases. Nucleic Acids Res. 2004, 32: 2632-2641. 10.1093/nar/gkh599.
Article
PubMed
CAS
PubMed Central
Google Scholar
Comai L, Young K, Till BJ, Reynolds SH, Greene EA, Codomo CA, Enns LC, Johnson JE, Burtner C, Odden AR, Henikoff S: Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant J. 2004, 37: 778-786. 10.1111/j.0960-7412.2003.01999.x.
Article
PubMed
CAS
Google Scholar
Markiewicz P, Kleina LG, Cruz C, Ehret S, Miller JH: Genetic studies of the lac repressor. XIV. Analysis of 4000 altered Escherichia coli lac repressors reveals essential and non-essential residues, as well as "spacers" which do not require a specific sequence. J Mol Biol. 1994, 240: 421-433. 10.1006/jmbi.1994.1458.
Article
PubMed
CAS
Google Scholar
Ng PC, Henikoff S: Predicting deleterious amino acid substitutions. Genome Res. 2001, 11: 863-874. 10.1101/gr.176601.
Article
PubMed
CAS
PubMed Central
Google Scholar
Saunders CT, Baker D: Evaluation of structural and evolutionary contributions to deleterious mutation predictions. J Mol Biol. 2002, 27: 891-901. 10.1016/S0022-2836(02)00813-6.
Article
Google Scholar
Ng PC, Henikoff S: SIFT: Predicting amino acid changes that affect protein function. Nucleic Acids Res. 2003, 31: 3812-3814. 10.1093/nar/gkg509.
Article
PubMed
CAS
PubMed Central
Google Scholar
Taylor N, Greene EA: PARSESNP: A tool for the analysis of nucleotide polymorphisms. Nucleic Acids Res. 2003, 31: 3808-3811. 10.1093/nar/gkg574.
Article
PubMed
CAS
PubMed Central
Google Scholar
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, Jacobsen SE: Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science. 2001, 292: 2077-2080. 10.1126/science.1059745.
Article
PubMed
CAS
Google Scholar
Papa CM, Springer NM, Muszynski MG, Meeley R, Kaeppler SM: Maize Chromomethylase Zea methyltransferase2 Is Required for CpNpG Methylation. Plant Cell. 2001, 13: 1919-1928. 10.1105/tpc.13.8.1919.
Article
PubMed
CAS
PubMed Central
Google Scholar
Jackson JP, Lindroth AM, Cao X, Jacobsen SE: Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature. 2002, 416: 556-560. 10.1038/nature731.
Article
PubMed
CAS
Google Scholar
Zilberman D, Cao X, Jacobsen SE: ARGONAUTE4 controls of locus-specific siRNA accumulation and DNA and histone methylation. Science. 2003, 299: 716-719. 10.1126/science.1079695.
Article
PubMed
CAS
Google Scholar
Tompa R, McCallum CM, Delrow J, Henikoff JG, vanSteensel B, Henikoff S: Genome-wide profiling of DNA methylation reveals transposon targets of CHROMOMETHYLASE3. Curr Biol. 2002, 12: 65-68. 10.1016/S0960-9822(01)00622-4.
Article
PubMed
CAS
Google Scholar
Chuang CF, Meyerowitz EM: Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana. Proc Natl Acad Sci USA. 2000, 97: 4985-4990. 10.1073/pnas.060034297.
Article
PubMed
CAS
PubMed Central
Google Scholar
Jackson AL, Bartz SR, Schelter J, Kobayashi SV, Burchard J, Mao M, Li B, Cavet G, Linsley PS: Expression profiling reveals off-target gene regulation by RNAi. Nat Biotechnol. 2003, 21: 635-637. 10.1038/nbt831.
Article
PubMed
CAS
Google Scholar
Tax FE, Vernon DM: T-DNA-associated duplication/translocations in Arabidopsis. Implications for mutant analysis and functional genomics. Plant Physiol. 2001, 126: 1527-1538. 10.1104/pp.126.4.1527.
Article
PubMed
CAS
PubMed Central
Google Scholar
Okagaki RJ, Neuffer MG, Wessler SR: A deletion common to two independently derived waxy mutations of maize. Genetics. 1991, 128: 425-431.
PubMed
CAS
PubMed Central
Google Scholar
Till BJ, Colbert T, Tompa R, Enns LC, Codomo CA, Johnson JE, Reynolds SH, Henikoff JG, Greene EA, Stein MN, Comai L, Henikoff S: High-throughput TILLING for functional genomics. Plant Functional Genomics: Methods and Protocols. Edited by: GrotewaldE. 2003, Clifton, NJ, Humana Press, 205-220.
Chapter
Google Scholar
CODDLE: . [http://www.proweb.org/coddle]
Chrom DB: . [http://chromdb.org]