- Research article
- Open Access
Production of cecropin A antimicrobial peptide in rice seed endosperm
© Bundó et al.; licensee BioMed Central Ltd. 2014
Received: 4 October 2013
Accepted: 14 April 2014
Published: 22 April 2014
Cecropin A is a natural antimicrobial peptide that exhibits rapid, potent and long-lasting lytic activity against a broad spectrum of pathogens, thus having great biotechnological potential. Here, we report a system for producing bioactive cecropin A in rice seeds.
Transgenic rice plants expressing a codon-optimized synthetic cecropin A gene drived by an endosperm-specific promoter, either the glutelin B1 or glutelin B4 promoter, were generated. The signal peptide sequence from either the glutelin B1 or the glutelin B4 were N-terminally fused to the coding sequence of the cecropin A. We also studied whether the presence of the KDEL endoplasmic reticulum retention signal at the C-terminal has an effect on cecropin A subcellular localization and accumulation. The transgenic rice plants showed stable transgene integration and inheritance. We show that cecropin A accumulates in protein storage bodies in the rice endosperm, particularly in type II protein bodies, supporting that the glutelin N-terminal signal peptides play a crucial role in directing the cecropin A to this organelle, independently of being tagged with the KDEL endoplasmic reticulum retention signal. The production of cecropin A in transgenic rice seeds did not affect seed viability or seedling growth. Furthermore, transgenic cecropin A seeds exhibited resistance to infection by fungal and bacterial pathogens (Fusarium verticillioides and Dickeya dadantii, respectively) indicating that the in planta-produced cecropin A is biologically active.
Rice seeds can sustain bioactive cecropin A production and accumulation in protein bodies. The system might benefit the production of this antimicrobial agent for subsequent applications in crop protection and food preservation.
Antimicrobial peptides (AMPs) are evolutionarily conserved components of the innate immune system of most living organisms. AMPs show a high degree of sequence diversity but share some characteristics including their predominantly cationic character, a high content of hydrophobic residues, and an amphipathic structure. They are also natural antibiotics that exhibit rapid, potent and long-lasting activity against a broad spectrum of pathogens by affecting conserved features of microbial cell membranes . AMPs are emerging as valuable agents for crop protection [2–4], food preservation [5, 6], and pharmaceuticals for both human and animal health [7–9] to alleviate the growing problem of conventional antibiotic resistance and the shortage of effective compounds. However, the high cost of chemical synthesis or the low yield obtained via purification from natural sources has limited the use of AMPs in these fields, particularly in applications with little added value.
Plants are promising biofactory systems for AMPs; they are economical to grow, easily scalable and generally regarded as safe because of the low risk of contamination with human and animal pathogens . Plants have successfully been used for the production of different proteins for therapeutic and technological applications . However, little attention has been paid to the use of plants as biofactories for AMPs. Evidence indicating that plants can sustain AMP production can be found in the literature, since plants have been used for the heterologous production of AMPs with the aim of improving host resistance to pathogen infection . No extensive efforts were made in those studies, however, to quantify the amount of AMP produced in the transgenic plants.
Seeds naturally accumulate proteins, packed in a dehydrated optimal biochemical environment for long-term storage. Thus, this organ seems suitable for the production of stable large amounts of AMPs in a compact biomass. In particular, rice seeds are considered as a good biofactory due to high grain yields. Furthermore, rice is easy to transform, can be grown under containment conditions, and the risk of unintended gene flow is minimal compared with other crops .
The rice endosperm is an appropriate tissue for the heterologous production of proteins of interest [13–17]. This organ occupies most of the space within the rice seed. Endosperm cells mostly contain starch granules and proteins, and are the major storage protein sink. In rice, 60% to 80% of all storage proteins are glutelins, which are insoluble in neutral saline solutions but soluble in acid or alkaline solutions . They are classified into four groups (GluA, GluB, GluC and GluD) based on their amino acid sequence . Some 20% to 30% of all rice seed proteins are alcohol-soluble prolamines . Rice seeds also accumulate a salt-soluble globulin which comprises up to 5% of the seed protein . These storage proteins are densely packed into specialized storage organelles called protein bodies (PBs). There are two types of PBs in rice seeds: PB-I and PB-II. The former are spherical protein inclusions that bud from the endoplasmic reticulum (ER) and in which prolamines are typically accumulated [21, 22]. The later, also known as protein storage vacuoles (PSVs), contain glutelin and globulin proteins, and are characterized by their irregular shape, with a diameter of about 2–4 μm, and their highly uniform dense structure. Glutelins aggregate in PB-II and form protein inclusions with crystalline structures [21, 23]. PB-II are derived from Golgi or may bypass the Golgi complex . All storage proteins contain an N-terminal signal peptide that mediates translocation into the ER, where the signal peptide is cleaved and the protein is transported to the appropriate storage compartment . The seed storage organelles can contain recombinant proteins, offering stability in planta and allowing considerable accumulation .
The aim of this study is to explore the feasibility of using rice seed endosperm for the production of AMPs. Cecropin A was chosen as the AMP to be produced, based on its biotechnological potential. Cecropin A is a linear and cationic peptide isolated from insect haemolymph that shows potent lytic activity against important bacterial and fungal phytopathogens [27–29]. Its constitutive accumulation in transgenic rice plants has been shown to confer enhanced pathogen resistance . Previous studies by our group demonstrated that transgenic rice plants constitutively expressing a cecropin A gene designed to secret the encoded peptide in the extracellular space had an abnormal phenotype and were not fertile . No effect on plant performance was observed in the transgenic rice plants that accumulated cecropin A in the ER, the plants accumulated low levels of the peptide in their leaves . Here, we report the production and accumulation of bioactive cecropin A in rice endosperm without any impact on seed viability or seedling growth. Two different endosperm-specific promoters were used to drive the expression of a codon-optimized synthetic cecropin A gene (CecA), namely the GluB1 and GluB4 promoters. The N-terminal signal peptide sequence of either the GluB1 or GluB4 protein was fused to the cecropin A sequence. Furthermore, two different CecA genes, encoding the cecropin A or cecropin A-KDEL peptide, were assayed to determine the effect of the ER retention signal (KDEL) on peptide accumulation and subcellular localization.
Generation of transgenic rice plants for cecropin A production
Transgenic rice plants were produced by Agrobacterium-mediated transformation using the hygromycin resistance gene as the selectable marker. After each transformation, hygromycin-resistant plants were obtained and transgene integration was verified by PCR analysis of (Additional file 1). No apparent adverse effects on the plant phenotype were observed under greenhouse conditions. Six independent lines per transformation event were selected to obtain the T2 homozygous progeny plants. The stability of the transgene integration and inheritance was monitored across generations by the hygromycin resistance phenotype encoded in the T-DNA.
Accumulation of cecropin A in rice seeds
We then examined whether the glutelin promoters specifically direct CecA gene expression specifically to seed and not to vegetative tissue, such as roots or leaves. To this end, protein extracts were prepared from the roots and leaves of representative lines per each transgene and subjected to Western blot analysis. As positive controls, protein extracts from transgenic lines expressing CecA genes controlled by the maize ubiquitin-1 promoter were also included in this analysis. As shown in Figure 2A, cecropin A was detected in the protein extracts of seeds carrying any of the CecA genes controlled by glutelin promoters, whereas they were absent in the extracts from leaves and roots of the same plants. As expected, positive reactions were detected in the leaf and root protein extracts of the lines constitutively expressing CecA genes. Thus, this analysis confirmed that cecropin A accumulated in rice seeds, but not in the vegetative tissues, when expression was controlled by either the GluB1 or the GluB4 promoter.
To further characterize the cecropin A lines, the distribution of the heterologous peptide in the seeds was analysed by in situ immunodetection. As shown in Figure 2B, a positive reaction was detected in the mature seeds of transgenic plants harbouring any of the four transgenes. Specific immunological reactions were detected in the endosperm of cecropin A seeds as compared to wild-type seeds. An unspecific reaction in embryo tissue was also observed in all the seeds analysed, including wild-type and empty vector seeds (Figure 2B). Therefore, the transgenic lines produced and accumulated cecropin A in the rice seed endosperm.
A comparative analysis of cecropin A accumulation in the different transgenic lines generated in this work was carried out. By comparing band intensities with those of known amounts of synthetic cecropin A, the cecropin A content in the lines was determined (Figure 2C). This study revealed variability in cecropin A accumulation between transgenic lines harbouring the same transgene, as well as in lines harbouring different transgenes. The accumulation levels ranged from 0.5 to 6 μg/g seed tissue. Similar accumulation levels were observed using either the GluB1 or GluB4 promoter, suggesting that the observed variability is associated with transgenesis rather with the activity of one or another promoter. Furthermore, the cecropin A levels were similar in seeds harbouring the transgenes with or without the KDEL extension sequence, indicating that the KDEL signal did not enhance accumulation of the peptide. Only one line carrying the pGluB1:CecAKDEL transgene (line 5) appeared to accumulate higher levels than the other transgenic lines. In addition, the observed variability in accumulation did not correlate with the transgene copy number of each line, as most of the lines generated contained one or two transgene insertions as estimated by quantitative PCR (Additional file 2).
Cecropin A accumulates in PB-II
Identification of in planta-produced cecropin A by MS analysis
Resistance of cecropin A rice seeds to seed-borne pathogens
In the present study, we generated transgenic rice plants that produce bioactive cecropin A in their seed endosperm. Stable integration and inheritance of transgenes was demonstrated. Our transgenic rice seeds tolerated the accumulation of this bioactive peptide without any major change in germination rate or seed viability; thus indicating that rice seeds can sustain the production of this AMP. Therefore, our work demonstrates the usefulness of the GluB1 and GluB4 promoters to drive strong and tissue-specific expression of CecA genes in rice seeds. High activity in the rice endosperm was reported for these two promoters, with GluB4 activity being slightly higher than that of GluB1. Consistently with those findings, we detected specific accumulation of cecropin A on seed endosperms, and not in vegetative tissues, when CecA gene expression was driven by either of these two promoters. While, similar accumulation levels were observed with the two promoters assayed, the accumulation levels were higher than those of seeds of transgenic plants that constitutively express the CecA gene controlled by the strong maize ubiquitin-1 promoter. Moreover, the endosperm-specific expression of CecA genes had no negative effects on the normal growth and development of the rice plant; whereas important effects on plant fitness have been reported in transgenic rice plants that constitutively express transgenes encoding cecropin A or cecropin A-derived AMPs [30, 35]. As an additional benefit, the seed-specific accumulation of the cecropin A limits the exposure of the beneficial microbes in the rhizosphere to AMPs.
Concerning the study of targeting mechanisms, in this work we analysed the effects of the N-terminal signal peptide of a rice glutelin, either GluB1 or GluB4, and of the presence or absence of C-terminal KDEL tag. These signal peptides are known to guide translocation of the GluB1 and GluB4 storage proteins into the ER lumen and to be essential for transfer to PBs . Immunofluorescence and microscopic visualization of the transgenic seed tissues revealed that cecropin A accumulated in the glutelin-containing storage vacuole of endosperm cells, when either signal peptide was fused to the cecropin A. This subcellular localization was observed in all transgenic seeds, including those that accumulated the cecropin A tagged with the KDEL signal. Thus, it appears that the GluB1 or GluB4 N-terminal signal peptide includes the sorting signals necessary to direct this peptide to the PB-II and overpowers the KDEL ER retention signal. Unexpected accumulation of KDEL-tagged recombinant seed proteins has previously been reported and is not fully understood [36–39]. Most KDEL-tagged recombinant seed proteins have been reported to accumulate primarily, or exclusively in ER-derived PBs or PB-I . Presumably, protein sorting to PBs might not only rely on the presence of specific targeting signals in the polypeptide but also might depend on the intrinsic properties of the protein or possible interactions with other proteins in the ER lumen [24, 39]. For instance, protein aggregation has been reported as a determinant of sorting to PBs [24, 40]. There is then the possibility that the specific physico-chemical properties of the cecropin A may be responsible for its localization in the PB-II. In favour of this hypothesis, the cecropin A peptide has amphipathic properties with a structure where hydrophobic residues are clustered into a separated domain, which may confer a tendency for self-aggregation, as proved by its dimeric form in the rice protein extracts. Moreover, cecropin A is a strongly cationic peptide and this may facilitate its interaction with the acidic glutelins during their transport to PSVs, and then they may sort together to the same organelle. However, some cecropin A-containing bodies from which the glutelin proteins were excluded were also visualized, indicating that cecropin A could also accumulate in other ER-derived PBs. Further studies are needed to clarify the molecular determinants of cecropin A accumulation into the PB-II in seeds. Be that as it may, the important result is the compartmentalization of the cecropin A antimicrobial peptide inside subcellular organelles, which protect the peptide from endogenous proteases, thereby offering stability and allowing it to accumulate in rice tissues. Cecropin peptides are known to be highly susceptible to plant proteases and therefore their accumulation in plant tissues is not straightforward . In addition, sequestration of this AMP into a storage organelle, such as PBs, would reduce its toxicity to the host plant and cecropin A seeds were indeed viable and showed a normal germination rate.
Transgenic plants expressing the cecropin A gene under the control of either promoter with the KDEL extension, or not, were evaluated in terms of cecropin A accumulation in seeds. Accumulation ranged from 10 to 100 ng per seed, as measured via immunoblot analysis. There were differences in cecropin A accumulation, which were mainly associated with variability of transgene expression between independently generated lines for each transformation event. Even the attachment of the KDEL signal to cecropin A appears not to have an important effect on its accumulation in rice seeds (i.e., the pGluB1:CecAKDEL and pGluB1:CecA, or pGluB4:CecAKDEL and pGluB4:CecA lines accumulated similar levels of cecropin A. This is despite the fact that several reports indicate that the presence of the KDEL signal sequence enhances the stability and yield of some recombinant proteins in seeds [14, 41]. Rice endosperm has been used to produce several valuable recombinant proteins, including antibodies, vaccines and other pharmaceuticals [13–15, 39, 41–43]. For several of these proteins, the reported accumulation was higher than the cecropin A levels in our transgenic seeds; ranging from 1 μg/seed for the human interleukin-10 protein , to the 60 μg/seed for the chimeric tolerogen 7Crp protein , and up to 200 μg/seed for chimeric tolerogen TPC7 . However, difficulties in accumulating small peptides (of fewer than 50 residues) in rice endosperm have also been reported and associated with transgene silencing and instability of transgene products in plant cells [45–48]. Thus small peptides have generally been produced through tandem repeats or fusion to carrier proteins [41, 45–49], requiring downstream processing to deliver the peptide of interest. Taking into account the peptide size, the amount of the small cecropin A peptide (37 amino acids, 4 kDa) accumulated in rice seeds ranged from 2.5 to 25 pmols/seed. These values are within the average to the reported accumulation of peptides when considering only the size of the peptide with the total fusion protein, such as 1.18 or 51.47 pmols/seed of the chimeric tolerogen 3Crp [47, 48] or 6.25 pmols/seed of the tolerogen Cryj I and Cryj II . Additionally, underestimation of cecropin A accumulation based on immunoblot detection cannot be ruled out, since difficulties in Western blot analysis and immunodetection of other basic short peptides have been reported . Nevertheless, the usefulness of producing single cecropin A peptides is not only determined by the level of accumulation in transgenic rice seeds, but also by the potency of cecropin A as an antimicrobial agent for the target pathogens without additional processing. In this sense, previous studies on the antimicrobial activity of cecropin A and cecropin A-derived peptides have shown their effectiveness at very low micromolar concentrations in terms of growth inhibition of economically important phytopathogens, including the fungi F. solani, F. verticillioides and Phytophthora infenstans, and the bacteria Erwinia amylovora, Pseudomonas syringae and Xanthomonas axonapodis[27, 28, 52, 53].
The targeting of endosperm PBs not only conferred stability and reduced the toxicity of cecropin A, thereby allowing its accumulation in plant cells, but it also facilitated its purification from rice seeds. PBs are dense organelles that can easily be isolated by centrifugation [26, 54]. This is particularly relevant here, since downstream processing of plant material to purify products greatly increases the production costs of recombinant proteins when using plants as biofactories . A simple procedure based on two-step centrifugation was implemented here to obtain enriched cecropin A-containing PB fractions. Further studies are required to set up and optimize large-scale purification of cecropin A from seeds for potential applications in crop protection or food preservation. The production system for cecropin A described here using rice endosperm as biofactories can potentially be extended to other AMPs, although this needs to be evaluated for AMPs of different sizes, structures or mechanisms of action.
Finally, the observations that the in planta-produced cecropin A is biologically active and that accumulation of cecropin A in rice seeds confers protection against fungal and bacterial pathogens have additional implications for plant protection. In the present work, disease resistance against two important rice pathogens was evaluated. The fungus F. verticillioides has been associated with the bakanae disease in rice , which occurs widely throughout Asia and sporadically in other rice producing areas, and causes important crop losses worldwide. Moreover, F. verticillioides is a seed-borne and seed-transmitted pathogen that not only causes yield losses but also decreases the quality of grain by producing hazardous mycotoxins . The cecropin A-seeds also showed enhanced resistance against D. dadantii, previously known as Erwinia chrysanthemi, the causal agent of foot rot of rice [57, 58]. Resistance to F. verticillioides and D. dadantii in transgenic seeds indicates that cecropin A accumulation could be a useful strategy for engineering broad-spectrum protection in rice grain.
Rice seeds can sustain the production of biologically active cecropin A, and presumably other antimicrobial peptides with similar properties. Confining the accumulation of AMP within subcellular compartments, specifically protein bodies, and limiting its production to the rice endosperm avoids the potential negative impact of its production in seed viability and seedling growth. This work has implications for molecular farming since it demonstrates the potential of rice seeds as biofactories for antimicrobial peptides and also for plant protection by showing that production of the antimicrobial peptide cecropin A is a useful strategy for engineering broad-spectrum protection against pathogen infection in rice grains.
Isolation of rice glutelin gene promoters
The promoters and the signal peptide sequence of the two rice glutelin genes, GluB1 and GluB4, were amplified by PCR from rice (Oryza sativa cv. Senia) genomic DNA using Taq DNA polymerase (Invitrogen). The primer pairs used for the amplification of each promoter are indicated in Additional file 3. The amplified fragments were inserted into the pGEMT-easy vector (Promega) and their nucleotide sequences determined.
Construction of plant expression vectors
Four vectors containing a codon-optimized synthetic CecA gene were prepared for plant transformation. The scheme of the constructs is presented in Figure 1A. Two of them were designed for the production of cecropin A and the other two for C-terminal KDEL-tagged cecropin A. CecA gene expression was under the control of the endosperm-specific promoters of either the GluB1 or the GluB4 genes including the signal peptide sequence for the corresponding glutelin protein, and the terminator signal of the nopaline synthase gene. For vector preparation, the nos terminator was inserted as a BamHI-SacI fragment downstream of the promoter fragments in the pGEMT-easy vector; these restriction sites were incorporated into the oligonucleotides used for the PCR amplification of the nos terminator. Next, the synthetic cecA genes were inserted as BamHI fragments between the promoter and the nos terminator. The corresponding fragments were obtained by PCR amplification using the oligonucleotides that incorporated the BamHI restriction sites (Additional file 3) from the previously described synthetic CecA genes . Finally, the complete cassettes for the expression of the CecA gene under the control of the glutelin promoters as KpnI-SacI fragments, and for the expression of the CecA-KDEL gene as KpnI fragments, were cloned into the pCAMBIA 1300 vector. This resulted in the plasmids presented in Figure 1A. All the constructs used for rice transformation were verified by nucleotide sequencing.
Production of transgenic rice plants
Transgenic rice lines (O. sativa cv. Senia or cv. Ariete) were produced by Agrobacterium-mediated transformation of embryonic callus derived from mature embryos, as described previously . The expression vector constructs were transferred to Agrobacterium tumefaciens EHA105 . The parent pCAMBIA 1300 vector already contains the hygromycin phosphotransferase gene (hptII) in the T-DNA region, affording hygromycin resistance. Transgene insertion was confirmed in the regenerated plants by PCR analysis using leaf genomic DNA as the template. The positive transformants were grown under containment greenhouse conditions to obtain homozygous transgenic lines in the T2 generation. Homozygous lines were identified by segregation of hygromycin resistance. The transgene copy number was estimated using quantitative PCR in the T2 homozygous lines by comparison with standard curves for the CecA gene at different DNA concentrations (Additional file 2), using a previously described method [35, 61]. Rice plants transformed with the empty vector (pCAMBIA 1300) were also produced for this study; rice plants constitutively expressing the CecA gene were also assayed . All rice plants were grown at 28°C ± 2°C under a 14 h/10 h light/dark photoperiod.
In situ immunodetection of cecropin A in whole seeds
Cecropin A accumulation in the transgenic rice seeds was analysed by in situ immunodetection using antibodies against cecropin A , according to the method of Qu and collaborators  with minor modifications. These included a stronger and extended blocking procedure (overnight incubation of sections in 10% skimmed milk in TBST), reaction with cecropin A antiserum (2 hours incubation with a 1:500 dilution), and the colorimetric detection of the antigen-antibody complexes using the NBT/BCIP substrate of alkaline phosphatase (Roche).
Immunolocalization of cecropin A in PBs
Dehulled mature seeds were used for immunofluorescent detection of cecropin A in rice PBs using 10% skimmed milk as a blocking reagent . Immunoreaction with rabbit anti-cecropin A antibodies (1:200 dilution) were visualized using the fluorescent labelled AlexaFluor488 anti-rabbit IgG as secondary antibodies (Molecular Probes, 1:5000 dilution). Anti-glutelin antibodies (kindly provided by Dr. Okita, Washington State University, USA) were conjugated to the fluorophore AlexaFluor647 using the APEX antibody labelling kit (Molecular Probes) and were used for fluorescent immunodetection of PB-II. PB-I were fluorescently labelled with rhodamine B hexyl ester (Molecular Probes). Fluorescent endosperm cells were analysed with a confocal laser scanning microscope (Leica TCS-SP5II). The AlexaFluor488 fluorophore was excited with a blue argon ion laser (488 nm) and the emitted light was collected between 500 and 550 nm. The rhodamine was excited with a HeNe laser (543 nm) and the emitted light was collected between 570 and 650 nm; and the AlexaFluor647 fluorophore was excited with a HeNe laser (633 nm) and the emitted light was collected between 650 and 750 nm. The resulting images were processed using Leica LAS-AF software (version 1.8.2).
Ten dehulled mature seeds per line were water imbibited for one hour, and then ground in a mortar at 0°C in 5 ml of homogenization buffer (HB, 10 mM Tris–HCl pH 7.5, KCl 50 mM, MgCl2 10 mM, EDTA 10 mM and plant protease inhibitors) containing 10% sucrose. The homogenates were filtered through two layers of Miracloth (Calbiochem) to remove tissue debris and centrifugated at 100 × g for 5 min at 4°C. Aliquots of the supernatants (3 ml) were layered onto discontinuous sucrose density gradients (20%, 30%, 50%, and 70% w/v) in HB buffer and centrifugated at 4°C for 2 h at 24000 × g in a Beckman SW40 Ti rotor. Equivalent aliquots of supernatant, interphase fractions and pellet were analysed by SDS-PAGE followed by protein staining in Coomassie blue or immunoblot using specific antibodies.
Preparation of protein extracts and immunoblot analysis
Protein extracts were prepared from dehulled mature seeds (10 seeds, 200 mg), after one hour water imbibition, using a simplified method for enrichment in dense organelles. The same protocol was used for vegetative tissues (200 mg). The plant material was ground and homogenized in a sucrose-containing extraction buffer (10 mM phosphate buffer pH7.5, 0.6 M sucrose). Then the cellular debris and starch were removed from the homogenates by low speed centrifugation (200 x g), and PB enriched fractions were obtained by high speed centrifugation (2000 × g) and resuspended directly in SDS-loading buffer. Protein extracts were separated on tricine-SDS-PAGE (16.5%), transferred to a nitrocellulose membrane (Protran 0.2 μm) and immunodetected as described previously . To determine cecropin A accumulation in seed protein extracts, different amounts of cecropin A (GeneScript) were used as standards. Chemiluminescent reaction was captured with an ImageQuant™ LAS4000 (GE Healthcare) digital imaging system. Signal intensity was quantified using Multi-Gauge V3.0 (FujiFilm) software. Quantification was performed in 3 independent experimental replicas using at least 3 independent lines per transgene and 10 seeds per line.
Mass Spectrometry Analysis
Subcellular fraction samples containing PBs were diluted in 5 volumes of ultrapure water and precipitated by centrifugation for 45 min at 75000 × g. Then, proteins were resuspended in SDS-loading buffer and separated by tricine-SDS-PAGE (16.5%). Two bands were excised from the gel between the dye front and the 20 kDa marker (Sigma). For in-gel digestion, gel pieces were washed in 25 mM NH4HCO3, pH8, 50% acetonitrile, dehydrated with 100% acetonitrile and digested with 50 μl of a trypsin (Promega) solution in 25 mM NH4HCO3, pH8 overnight at 37°C. Peptides were extracted successively with 2% v/v formic acid and acetonitrile/water (80/20 v/v). Extracts were combined, dried and dissolved in 0.1% formic acid before LC-MS analysis.
The protein digests were analysed using a QTOF mass spectrometer (Maxis Impact; Bruker Daltonik GmbH), interfaced with a nano-HPLC Ultimate 3000 (Dionex). Samples were first loaded onto the pre-column (C18 PepMap100, 300 μm × 5 mm, 5 μm, 100 A, Dionex) at a flow rate of 20 μl/min for 5 minutes with solvent A (0.1% formic acid, 2% acetonitrile in water, v/v/v). After pre-concentration, peptides were separated in the reversed-phase column (C18 PepMap100, 75 μm × 250 mm, 3 μm, 100 A, Dionex) at a flow rate of 0.3 μl/min using a two-step linear gradient from 7% to 25% solvent B (0.1% formic acid, 90% acetonitrile in water, v/v/v) from 0 to 70 min and from 25% to 40% solvent B, from 70 to 90 min, and eluted into the mass spectrometer. The instrument was operated in the positive ion mode and the captive-spray source parameters were: a capillary voltage of 1300 V, a dry gas flow rate of 4 l/min at 150°C. After an initial MS scan at 5 Hz over the mass range of 50–2200 Th, the 30 most intense precursors were fragmented by collision-induced dissociation. The MS/MS raw data were analysed using Data Analysis software (Bruker Daltonik GmbH) to generate the peak lists. A local database including the cecropin A sequence was queried using the Mascot search engine (v. 2.2.04; Matrix Science) with the following parameters: trypsin as enzyme, 1 missed cleavage allowed, oxidation of methionine as variable modification, 15 ppm in MS and 0.05 Da in MS/MS.
Disease resistance assays
Resistance to F. verticillioides was assayed in transgenic rice seeds by inoculation with spore suspensions at different concentrations (103 or 105 spores/ml) on MS medium without sucrose as previously described . Inhibition of germination was determined by comparison to the seeds inoculated with sterile water 7 days post imbibition. The F. verticillioides isolate used in this work was collected from rice plants in Spain and provided by the Plant Protection Facilities of the Generalitat de Catalunya.
Resistance of cecropin A-seeds to D. dadantii (formely known as Erwinia chrysanthemi isolate AC4150) was evaluated by implementing a high-throughput assay derived from a previously described assay . The seeds were germinated in 24-well plates (3 seeds per well) in 1 ml of sterile water or bacterial culture suspensions (104 CFU) for 7 days. Inhibition of germination was evaluated as the ratio to non-inoculated seeds and by comparison to wild-type untransformed seeds.
We thank Dr. Okita of Washington State University for kindly providing us with rice glutelin antibodies. We are grateful to G. Peñas for collaborating with parts of this work, to P. Fontanet for help with greenhouse plants and to M. Amenós for help with confocal microscopy. We also acknowledge the REFUGE platform (http://www.refuge-platform.org/) funded by Agropolis Fondation for assistance in rice transformation. This work was supported by SEPSAPE grants (Plant-KBBE programme) EUI2008-03769 and EUI2008-03572 from the Spanish Ministry of Science and Innovation, and ANR-08-KBBE-010 from the French Research Agency. We also thank the Consolider-Ingenio CSD2007-00036 award to CRAG and the Department d’Innovació, Universitats i Empresa of the Generalitat de Catalunya (Xarxa de Referencia en Biotecnología, Xarxa de Referència en Tecnologia dels Aliments, SGR09626, and 2008SGR812) for support. We acknowledge support of the publication fee by the CSIC Open Access Publication Support Initiative through its Unit of Information Resources for Research (URICI).
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