Recovery from heat, salt and osmotic stress in Physcomitrella patens requires a functional small heat shock protein PpHsp16.4
© Ruibal et al.; licensee BioMed Central Ltd. 2013
Received: 29 July 2013
Accepted: 28 October 2013
Published: 5 November 2013
Plant small heat shock proteins (sHsps) accumulate in response to various environmental stresses, including heat, drought, salt and oxidative stress. Numerous studies suggest a role for these proteins in stress tolerance by preventing stress-induced protein aggregation as well as by facilitating protein refolding by other chaperones. However, in vivo evidence for the involvement of sHsps in tolerance to different stress factors is still missing, mainly due to the lack of appropriate mutants in specific sHsp genes.
In this study we characterized the function of a sHsp in abiotic stress tolerance in the moss Physcomitrella patens, a model for primitive land plants. Using suppression subtractive hybridization, we isolated an abscisic acid-upregulated gene from P. patens encoding a 16.4 kDa cytosolic class II sHsp. PpHsp16.4 was also induced by salicylic acid, dithiothreitol (DTT) and by exposure to various stimuli, including osmotic and salt stress, but not by oxidative stress-inducing compounds. Expression of the gene was maintained upon stress relief, suggesting a role for this protein in the recovery stage. PpHsp16.4 is encoded by two identical genes arranged in tandem in the genome. Targeted disruption of both genes resulted in the inability of plants to recover from heat, salt and osmotic stress. In vivo localization studies revealed that PpHsp16.4 localized in cytosolic granules in the vicinity of chloroplasts under non stress conditions, suggesting possible distinct roles for this protein under stress and optimal growth.
We identified a member of the class II sHsp family that showed hormonal and abiotic stress gene regulation. Induction of the gene by DTT treatment suggests that damaged proteins may act as signals for the stress-induction of PpHsp16.4. The product of this gene was shown to localize in cytosolic granules near the chloroplasts, suggesting a role for the protein in association with these organelles. Our study provides the first direct genetic evidence for a role of a sHsp in osmotic and salt stress tolerance, and supports a function for this protein particularly during the stress recovery stage of P. patens.
Plants must face and cope with various environmental stresses during their life cycle. Drought, salinity and exposure to extreme temperatures are serious threats to agriculture and have a great impact on plant productivity. Most of these stresses share common consequences as a result from water deprivation, namely osmotic stress and the associated oxidative stress .
Tracheophytes have evolved numerous anatomical adaptations to cope with water deficit. These include the presence of vascular tissues, root systems and stomata, which all together help minimizing water loss. By contrast, bryophytes lack these adaptations and must rely on efficient biochemical and physiological mechanisms to survive stress by limiting or repairing the cellular damage resulting from these conditions .
Numerous studies have shown that the plant hormone abscisic acid (ABA) plays a crucial role in controlling downstream responses essential for adaptation to abiotic stress. As part of osmotic stress responses, regulation of gene expression occurs in both ABA-dependent and ABA-independent manner . Activation of ABA and stress responsive genes lead to accumulation of proteins belonging to different families, including components of the regulatory networks and proteins implicated in cellular defenses. The latter include proteins such as aquaporins, chaperones, enzymes for osmolyte biosynthesis or detoxification and late embryogenesis abundant (LEA) proteins .
Environmental stresses that result in cellular dehydration, such as salt, freezing and water stress lead to similar changes in plant gene expression [5–7]. Disruption of cellular homeostasis induced by exposure to these stresses often causes protein dysfunction. Therefore, cells must employ efficient mechanisms to allow proteins to maintain their functional conformation as well as to prevent the aggregation of denatured proteins under stress. One of the most widespread cellular responses to abiotic stress is the production of heat shock proteins (Hsps). They accumulate in both prokaryotic and eukaryotic cells in response to heat or exposure to various other stress conditions. Strong evidences support a role for Hsps as molecular chaperones, preventing protein aggregation or assisting protein folding during stress [8–12]. Hsps are grouped into five families according to their approximate molecular weight: Hsp100s, Hsp90s, Hsp70s, Hsp60s and Hsp20s, also known as small Hsps (sHsps). Small Hsps belong to a diverse and ubiquitous family of stress proteins that range in size from 12–42 kDa, and are defined by the presence of a conserved C-terminal α-crystallin domain . Plant sHsp protein family is far more complex than that in any other organism investigated to date, probably reflecting a molecular adaptation to stress conditions that are unique to plants . For instance, the Arabidopsis genome encodes 19 sHsps which are divided into several subfamilies according to their sequence relatedness and their subcellular localization . Angiosperms have 11 subfamilies that include most but not all of the sHsps. Six of the subfamilies are cytosolic/nuclear localized sHsps (CI-CVI) whereas five others are targeted to organelles: endoplasmic reticulum (ER), peroxisomes (PX), chloroplasts (CP) and mitochondria (MTI and MTII) [8, 14, 15].
Plant sHsps have been shown to accumulate in response to a broad spectrum of stress factors, such as heat, drought, salinity, low temperature and oxidative stress [8, 12, 16–21]. Moreover, some members of the cytosolic CI and CII sHsps have been shown to be constitutively expressed in the resurrection plant Craterostigma plantagineum, but not in the desiccation-sensitive callus, strongly suggesting a protective role for these proteins during desiccation . Although they are usually not detected under normal growth conditions, several members of the sHsp protein family are developmentally regulated, being the most extensively characterized example of this non-stress regulation during seed development . Developmental regulation of sHsps is generally restricted to some members of the class I and class II sHsps, suggesting that these proteins have distinct regulatory controls during seed maturation as opposed to during stress .
Stress-induced expression of sHsps is controlled by heat shock transcription factors (Hsfs) which bind to highly conserved palindromic motifs, so-called heat stress- elements (HSEs) [24–26]. Unlike most other organisms, plant Hsf gene family is highly complex, usually consisting in more than 20 members with high functional diversification . Some members of the Hsf protein family are essential for expression of Hsps during certain developmental stages. This is the case of HsfA9 from Arabidopsis which controls accumulation of Hsps during seed maturation. Expression of Arabidopsis HsfA9 has been shown to depend on the ABSCISIC ACID INSENSITIVE 3 (ABI3) transcription factor, which regulates various genes during seed desiccation . Furthermore, ABI3 is required for Arabidopsis developmental regulation of Hsp17.4 but is not required for stress induction of this gene , reflexing the complexity of the regulatory network that control the expression of this type of genes.
The specific mechanisms by which sHsps confer cell protection are not fully understood. However, in recent years several studies have contributed to develop models showing how these proteins act . Small Hsps have been shown to have the capacity to stabilize and prevent aggregation of non-native proteins via binding through hydrophobic interactions [10, 29–33]. Although sHsps do not appear themselves to be able to refold non-native proteins, the current model for sHsps function is that their selective binding to unfolded proteins may facilitate subsequent ATP-dependent refolding by other chaperones [10, 29–31, 34]. Consistent with this idea, in vitro studies of Hsp18.1 from Pisum sativum as well as Hsp16.6 from Synechocystis sp PCC6803 showed that these proteins bind to unfolded proteins allowing their further refolding by Hsp70/Hsp100 complexes .
Although it is generally assumed that sHsps are directly involved in abiotic stress tolerance in plants, much of the information available to date is based on in vitro assays, mainly due of the lack of gene-specific knockout mutants in sHps genes. Physcomitrella patens is an excellent model organism for investigating the role of individual genes by reverse genetics, due to the high frequency of homologous recombination that facilitates the targeted disruption of nuclear genes . In higher plants, disrupted individual genes are usually obtained by screening of random mutants and the probability of altering a specific gene depends very much on the size of the target sequence. Therefore, P. patens has significant advantages over other model plants for functional studies of small genes, such as sHsps, by gene targeting via homologous recombination. In addition to this, several studies have shown that P. patens is highly tolerant to dehydration, salinity, and other abiotic stress factors [37–40], and this tolerance is thought to be based on the mobilization of efficient defense and repair mechanisms in response to stress and during stress relief .
This study addressed the question of the function of the duplicated sHsp genes PpHsp16.4 in abiotic stress tolerance in P. patens, which was isolated as an ABA-induced gene using suppression subtractive hybridization. PpHsp16.4 gene product was localized in the cytoplasm and showed to be phylogenetically related to the cytosolic class II family of sHsps. We demonstrated that knockout mutants of the two PpHsp16.4 genes lead to impaired or delayed recovery of plants from salt, osmotic and heat stress.
Identification of an ABA-induced gene encoding a 16.4 kDa sHsp from Physcomitrella patens
Small Hsp family of Physcomitrella patens
Scaffold 372: 273630 - 274513
Scaffold 8: 747337 - 748527
Scaffold 97: 716468 - 718213
Scaffold 38: 1916174 - 1917189
Expression profile of PpHsp16.4gene
In addition to the observed basal expression in unstressed plants, PpHsp16.4 was strongly induced by treatment with ABA, SA and DTT and after exposure of plants to heat, strong light, and salt or osmotic stress. In contrast, no increase in mRNA levels of PpHsp16.4 was observed in response to UV-B or to the oxidative stress inducing compounds, H2O2 or the herbicide MV, which is a superoxide anion propagator. Similarly, treatment of plants with these compounds for shorter or longer periods of time (4 h and 48 h) failed to induce PpHsp16.4 gene expression (Additional file 2), supporting that oxidative stress does not play a major role in the regulation of PpHsp16.4 gene expression. This later results were somewhat unexpected, as most of the CI and CII sHsp genes from other plants species are induced by oxidative stress .
Small Hsps have been suggested to be important not only during stress conditions, but also during plant recovery from stress . This prompted us to analyze the expression of PpHsp16.4 upon relief from heat or osmotic stress (Figure 2B). Plants were incubated at 37°C or in mannitol containing plates for 48 h, and thereafter transferred to optimal growth conditions for 6 h. In these experiments we used higher concentrations of mannitol for imposing a more severe osmotic stress, as these conditions have previously proven to be suitable for the evaluation of the P. patens capacity to recover from osmotic stress . Expression of PpHsp16.4 was compared to the dehydrin PpDHNA, which was previously shown to be strongly induced by osmotic stress but rapidly repressed upon stress relief [37, 45]. Our results showed that, in contrast to PpDHNA, relatively high expression levels of PpHsp16.4 were still observed after plants returned to optimal conditions, suggesting that PpHsp16.4 plays a role also during stress recovery.
Recently, Khandelwal et al  demonstrated that ABI3 is required for ABA-dependent recovery of P. patens from severe dehydration. Stress treatment of abi3 knockout plants resulted in a small or no reduction of the expression of several genes associated with stress tolerance. However, transcript accumulation of most of the assayed genes was drastically compromised in the abi3 mutant upon stress relief, suggesting that ABI3 is required primarily for stress recovery. These results prompted us to investigate the biological relevance of ABI3 in the regulation of PpHsp16.4 expression. We used a null mutant line of P. patens abi3 which contains no detectable ABI3 due to the disruption of the three copies of the gene . Our results showed that the basal transcript levels of PpHsp16.4, observed during normal growth, were considerably reduced in abi3 compared to the wild type. However, the expression profile of PpHsp16.4 was very similar in wild type and abi3 genotypes, both during stress as well as upon stress relief. In contrast, PpDHNA transcript accumulation in response to osmotic stress was markedly compromised in the abi3 mutant, suggesting that different pathways regulate the stress-induced expression of these two genes (Figure 2B). Our results suggest that, in contrast to other stress responsive genes, the stress induction and maintenance of PpHsp16.4 gene expression in P. patens is regulated in an ABI3 independent manner.
PpHsp16.4localized in cytosolic granules
To rule out that the observed localization pattern could result from the constitutive overexpression of PpHsp16.4 in heterologous systems, we examined in detail the targeting of fusion proteins expressed in their natural transcription and translation context in P. patens. For that purpose, we generated P. patens knock-in lines by inserting the Citrine yellow fluorescent protein gene  just before the stop codon of PpHsp16.4 by means of homologous recombination (Figure 3B). In this way, the expression of PpHsp16.4-Citrine chimeric gene was driven by its native promoter, and the spatiotemporal regulation of the fusion protein could be examined. Gene fusions were confirmed in stable transgenic lines by PCR using primers that recognized a sequence within the Citrine gene of the replacement construct combined with primers annealing with the genomic sequences flanking the 5′ region of the two identical PpHsp16.4a and PpHsp16.4b loci (Figure 3C). We selected three lines that were correctly targeted to the PpHsp16.4 locus based on the expected size of the PCR amplification products (1787 bp). Accumulation of the fusion protein in ABA-treated transgenic lines was analyzed by Western blot using α-GFP antibodies (Figure 3D). A band of ~43 kDa, consistent with the predicted size of PpHsp16.4-Citrine fusion protein was observed in all three lines. An additional band with a molecular mass of 27 kDa was observed in all experiments and corresponded to the cleaved Citrine product. To determine whether the accumulation pattern of PpHsp16.4-Citrine fusion protein correlated with the expression pattern of the wild type PpHsp16.4 gene, transgenic knock-in lines were analyzed by Western blot for the presence of PpHsp16.4-Citrine after treatment with ABA or in response to various abiotic stress stimuli, including heat (37°C), salt (NaCl) or osmotic stress (mannitol). Accumulation of the fusion protein was also analyzed upon relief from heat stress, by incubating plants at 37°C for 48 hours, and thereafter transferring them to optimal growth conditions for 6 hours. All treatments resulted in higher accumulation of the fusion protein when compared to the controls, indicating that the targeted construct was properly regulated, and that transcript and protein levels of this gene exhibited similar expression patterns (Figure 3E). These transgenic lines were analyzed by confocal microscopy for the determination of the tissue and subcellular localization pattern of the fusion protein. Consistent with the localization analysis in heterologous systems, PpHsp16.4-Citrine accumulated in well-defined regions of the cytoplasm of P. patens cells and was missing in other cellular compartments. One or few fluorescent bodies were observed in protoplasts from stable transgenic lines (Figure 3F-V) and in plant cells from different tissues. These structures were found to be always located in the vicinity of chloroplasts when plants were grown under optimal conditions (Figure 3F-I, II). Fluorescent structures were usually more abundant in protonema tissue (Figure 3F-I) than in the leafy gametophyte (Figure 3F-II). Upon exposure to heat or osmotic stress, fluorescent structures became larger and were more abundant than in control cells (Figure 3F-III, IV), resembling the cytosolic granules described by Löw et al  in tomato plants exposed to prolonged heat stress.
Targeted disruption of the two copies of PpHsp16.4compromised stress tolerance
Several lines were obtained in which either PpHsp16.4a or PpHsp16.4b had been targeted (data not shown). Two independent lines (dKO-1 and dKO-2) were identified, in which homologous recombination had occurred at the 5′end of both PpHsp16.4a and PpHsp16.4b loci (Figure 4B). To analyze whether these lines had incorporated the construct by two events of homologous recombination, primers were designed to recognize specific sequences outside the construct, downstream of PpHsp16.4a (primer b) or of PpHsp16.4b (primer f). When these primers were used in combination with a primer located within the selection cassette (primer d), no PCR product was observed in any of the lines analyzed. This result could be indicative of an integration pattern derived from a HR event at one end and a non-homologous end joining event at the other. To investigate whether a wild type copy of the targeted locus remained adjacent to the inserted construct, we used the primers that recognize genomic sequences flanking the construct of either PpHsp16.4a (primers a and b) or PpHsp16.4b (primers f and e). PCR products from the expected sizes (3882 bp PpHsp16.4a and 4024 bp for PpHsp16.4b) were obtained from the wild type genotype, but no amplification was observed when using DNA from any of the dKO lines, indicating the absence of a full wild type copy of these genes in the double mutants (Figure 4C).
Complex integration patterns, derived from concatenation of DNA or from other possibilities, have been shown to occur frequently when transforming P. patens genome with a targeting vector . To analyze the nature of the DNA integration within PpHsp16.4a and PpHsp16.4b loci in the double targeted lines, we used two outward-pointing primers (c and d) specific to the selection cassette to identify possible head-to-tail concatemers. A single PCR fragment of 1.3 kb was observed for the dKO-2 line (Figure 4D). This fragment was cloned and sequenced and the results support a model where at least two copies of the construct DNA had integrated in a head-to-tail orientation, but with the loss of the 3′ PpHsp16.4 genomic sequence. No PCR product was obtained when using a single primer only, indicating the absence of head-to-head or tail-to-tail full length concatemers (data not shown). A schematic representation of a possible integration pattern in either PpHsp16.4a or PpHsp16.4b loci in dKO-2, is shown in Figure 4E. To determine whether the construct had integrated only at PpHsp16.4 loci or additional copies were introduced in other genomic locations, we performed Southern blot using part of the selection cassette as a probe (Figure 4G). Genomic DNA from the double KOs was digested with PstI or with BamHI restriction enzymes, which cleave within the selection cassette, at the positions shown in Figure 4A. If a single insertion had occurred in each of the target genes, four hybridization bands of 8.38, 4.58, 7.7 and 3.3 kb should be detected after PstI digestion, and two bands of 5.4 and 4.7 kb, after BamHI cleavage. The restriction pattern obtained with PstI resulted in two bands of 8.4 and 4.5 kb in both mutants. It is possible that the 7.7 and 3.3 kb bands were not detected due to the short area of coverage of the probe. In case of the dKO-2 line, an additional band of 1.5 kb was observed, supporting multiple integration events in the same locus. Digestion with BamHI produced two hybridization bands of 5.4 and 4.7 kb in both KOs and an additional band of 1 kb was observed in dKO-2. These results suggest that no additional inserts had been integrated in other genomic regions outside of PpHsp16.4a and PpHsp16.4b loci in the double mutants, although a complex integration pattern, most likely involving the deletion of part of the DNA lying between both genes, had occurred for at least dKO-2 line.
Abiotic stress-induction of PpHsp16.4is independent of ROS and ABI3
This study provides genetic evidence for the involvement of a sHsp from P. patens in heat, salt and osmotic stress tolerance. PpHsp16.4 gene, which was found to be abundant in a subtractive library enriched in ABA-induced cDNAs, encodes a 16.4 kDa protein belonging to the cytosolic class II subfamily of plant sHsps. PpHsp16.4 was shown to be expressed at low levels under optimal growth conditions, and up-regulated in response to exposure to various abiotic stress factors, including strong light, heat, salt and osmotic stress. These stresses are usually accompanied by oxidative cell damage due to the accumulation of ROS, and therefore, it has been suggested that these compounds play an important role in sHsp gene regulation . Consistent with this, many of the CI or CII sHsp encoding genes from Arabidopsis and from other angiosperms, are expressed in response to oxidative stress among a broad spectrum of other stressors [15, 22, 50–53]. Furthermore, heat shock transcription factors have been shown to sense ROS and in turn activate Hsp gene expression [54, 55], and some data suggest that Hsps protect cells against ROS [20, 56]. However, in our experiments, expression of PpHsp16.4 gene was not affected by H2O2 or by the herbicide methyl viologen, indicating that ROS are not the primary signals for the induction of this particular gene. In contrast, induction of the unfolded protein response by treatment of plants with DTT resulted in a strong accumulation of PpHsp16.4 transcripts, suggesting that rather than ROS themselves, the damaged proteins may act as signals for gene induction, as it has been previously suggested .
In addition to stress, PpHsp16.4 was induced by treatment with ABA and SA, two phytohormones that have been linked to heat stress signaling and basal thermotolerance in plants [58, 59]. SA has been shown to induce the expression of sHsp genes from Arabidopsis[60, 61] and P. patens, suggesting a conservation of this regulatory pathway between angiosperms and mosses. Elevated levels of both ABA and SA have been measured in various plant species in response to heat stress [58, 60, 63], although their role in the regulation of Hsp gene expression during heat stress is not clear [59, 64].
A recent report demonstrated that PpABI3 was essential during the plant’s recovery from stress for maintenance of transcripts encoding proteins that are critical for tolerance . The high expression levels of PpHsp16.4 observed when plants were transferred to optimal conditions after exposure to stress, suggests a role for the corresponding protein in the recovery stage. However, expression of PpHsp16.4 during stress and upon stress relief was ABI3-independent. Nevertheless, the basal expression of the gene under optimal growth conditions was reduced in abi3 mutant, suggesting that different regulatory pathways operate in the regulation of PpHsp16.4 and supporting distinct developmental and stress regulation pathways of sHsps, as previously suggested . These results also suggest that PpHsp16.4 may be involved in cellular functions under non-stress conditions as it has been suggested for several members of the plant sHsp gene family that exhibit constitutive expression under non-stress conditions in various developmental stages [51, 65].
A functional PpHsp16.4gene is required for recovery from heat, salt and osmotic stress
Elucidation of plant sHsp function in vivo has been challenging due to the limited T-DNA insertion lines that are available in Arabidopsis to facilitate the analysis of sHsp deficient plants. The possibility to carry out targeted gene disruption in P. patens by means of homologous recombination, allowed us to assess the role of PpHsp16.4 genes in stress tolerance, by generating single and double knockout mutants of these genes. Our results showed that although wild type plants normally exhibit a low but constitutive expression level of PpHsp16.4 under optimal growth, we were not able to detect any significant difference in growth or morphology between the wild type and any of the mutant genotypes during non-stress conditions. Moreover, no phenotypical differences in the stress response were observed between the wild type and the single and double knockout mutants when growing in the presence of high salt or osmotic stress, or after incubation at 37°C. Nevertheless, we were able to detect a clear phenotype in the double knockout plants at the stress recovery stage. When plants exposed to heat, salt or osmotic stress were transferred to optimal growth medium, the double knockout lines were affected or failed completely to resume growth. Our data is consistent with other studies showing that P. patens, like other bryophytes, survives stress by employing molecular mechanisms that protect cellular integrity during stress and enable damage repair upon stress relief allowing plants to resume growth [37, 39, 46]. In this context, in accordance to the current models for sHsp action , PpHsp16.4 may contribute to stress tolerance by preventing stress-induced irreversible protein aggregation and, together with other chaperones, help re-solubilizing aggregated proteins allowing cells to return to equilibrium during recovery. It is intriguing that such phenotypic alterations were observed in spite of the large number of sHsp genes present in P. patens and the possible redundancy in their function.
Subcellular localization of PpHsp16.4 reveals possible distinct roles for this protein during stress and under physiological conditions
The generation of P. patens knock-in lines expressing the Citrine fluorescent protein fused to the C-terminal end of PpHsp16.4, allowed us to examine the subcellular localization and the spatiotemporal regulation of the fusion protein, when driven by the native promoter of the gene. PpHSP16.4 was expressed in all tissues under normal growth conditions as shown by the presence of single or multiple fluorescent bodies within the cytoplasm of the cells. Interestingly, these structures were always located in the vicinity of chloroplasts, suggesting a possible role for this protein in association with chloroplast functions. Chloroplasts are the primary targets of damage caused by high light, which interferes with oxygenic photosynthesis, a phenomenon known as photoinhibition , and exposure of plants to excess light strongly induced PpHsp16.4 transcript accumulation. Moreover, a recent report has demonstrated that a cytosolic class I Arabidopsis Hsp17.8 plays a role under standard physiological conditions, in targeting proteins to the outer membranes of chloroplasts . These authors showed that in non-stressed cells, Arabidopsis sHsp17.8 acts as an ankyrin repeat protein 2A (AKR2A) cofactor and binds chloroplasts as a dimer assisting protein targeting to this organelle. However, under heat shock conditions, expression of the gene was strongly induced and Hsp17.8 was converted to high oligomeric forms, as shown for other sHsps. Using heterologous tobacco and Arabidopsis transient or stable expression systems, we showed that PpHsp16.4 localized in the cytoplasm under the form of large and shapeless structures, resembling the heat-induced granules described by Löw et al . The observed fluorescent structures probably represent oligomeric complexes of PpHsp16.4-GFP fusion proteins, as it is well known that plant sHsps form oligomers of different orders [15, 68]. The expression profile of PpHsp16.4 in P. patens supported a similar pattern as for the Arabidopsis sHsp17.8. Indeed, upon heat shock or osmotic stress, the expression of PpHsp16.4 was strongly induced both at the transcript and the protein level, and the cytosolic signals of the fusion protein were converted to large structures which are consistent with high oligomeric protein complexes. This supports the idea that when acting as chaperones in the stress response, PpHsp16.4 could bind to unfolded proteins in large complexes, thereby preventing them from forming nonspecific aggregates, as it has been proposed for sHsp function .
Since the development of P. patens as a model system for reverse genetics by using homologous recombination technologies, numerous studies have contributed to genetically dissect plant responses to environmental stress. Despite the significant amount of data concerning the structure, gene regulation and function of the plant sHsp gene family, attributing specific roles to individual proteins in stress tolerance has been difficult. Using this excellent model, we provide the first direct genetic evidence for a role of a sHsp in osmotic and salt stress tolerance. Our results support a function of this protein particularly during the stress recovery stage of P. patens, emphasizing the importance of cellular mechanisms that protect protein integrity and enable damage repair upon stress relief. Our results also suggest a role for this sHsp under non stress conditions, in association with chloroplasts, as it has been shown for some class I sHsps from Arabidopsis.
Plant material, growth conditions and stress treatments
Physcomitrella patens Grandsen wild type  was used for all experiments described in this study. The abi3 triple knockout mutant  was kindly provided by Prof. Ralph S. Quatrano. Plants were grown and maintained axenically on cellophane overlaid BCDAT medium (1.6 g L-1 Hoagland’s 1 mM MgSO4, 1.8 mM KH2PO4 pH 6.5, 10 mM KNO3, 45 μM FeSO4, 1 mM CaCl2, 5 mM ammonium tartrate and 10 g L-1 agar) as described by Ashton and Cove . To generate protonemal cultures plant material was macerated with a sterile mortar and pestle in 2 ml of sterile double distilled water. For micropropagation, moss colonies were cut with a scalpel and plant fragments were transferred to fresh medium with cellophane. All plants were grown at 22°C under a photoperiod of 16 hours light, with a photon flux of 60 μmol m-2 sec-1. Three weeks-old colonies were used for all experiments. Abscisic acid, H2O2, methyl viologen, salicylic acid, dithiothreitol, NaCl and mannitol treatments were incorporated in the BCDAT medium. The concentrations of these compounds are indicated in the figure legends. Strong light treatment was performed by exposing the colonies with a photon flux of 350 μmol m-2 sec-1. UV-B treatment was done using a Hi-Tech lamp (G25T8E, Japan) with UV-B 0.034 mW/cm2. All treatments were performed for 24 hours except for strong light that was performed for 2 hours. All experiments were repeated at least three times. The different plant genotypes were grown together in the same plate, five colonies per genotype, and five plates per treatment and time point.
Tobacco plants of Nicotiana tabacum cv Petit Havana  was used for transient expression analysis. For protoplast preparation, plants were grown from surface-sterilized seeds in Murashige and Skoog medium  and 2% sucrose at 22°C with a 16 h day length at a light irradiance of 200 μmol m-2 sec-1. For agroinfiltration experiments, soil-grown tobacco plants were used.
Arabidopsis thaliana (Col-0) was used for stable transformation and confocal microscopy. For in vitro growth, seeds were surface sterilized for 15 min in 7% of bleach with 0.05% Tween-20, washed with sterile water, incubated at 4°C for 3 days and plated in Petri dishes with half strength MS medium (2.4 g L-1 Murashige and Skoog, 5 g L-1 sucrose, 0.5 g L-1 Monohydrate 2- ethanesulfonic acid and 10% agar). Plants were grown at 22°C with a photoperiod of 16 h light and a photon flux of 120 μmol m-2 sec-1.
Subtracted cDNA library construction
Moss colonies were treated with 20 μM ABA during 6, 24 and 48 hours and total RNA was extracted from untreated controls and ABA treated plants. Fifty μg of total RNA extracted from each time point were pooled together to constitute a single ABA treated sample and an untreated control. Two μg of mRNA purified from the RNA samples were used for cDNA synthesis. The Clontech PCR Select-cDNA Subtraction Kit (BD Biosciences Clontech) was employed for suppressive subtractive hybridization, using the samples derived from ABA-treated plants as tester and the controls as driver. The secondary PCR products were purified and inserted into pCR II vector and transformed into Escherichia coli TOP 10 competent cells, using TA cloning kit Dual Promoter from Life Technologies. Approximately 800 clones were selected for insert sequencing.
Translated protein sequences from Arabidopsis and rice sHsp genes were retrieved from Phytozome database, based on previous analysis reported in the literature [8, 65]. For the identification of sHsps genes in the genome of P. patens, all annotated genes in the Phytozome database were screened for the presence of the conserved α-crystalline domain, using this sequence as a query for a BlastP search. Sequences were aligned with ClustalW in a MEGA version 5 software [42, 43] for subsequent phylogenetic analysis. Construction of phylogenetic trees was done using the Neighbor joining method. Due to the large differences in the sizes of some members of the P. patens sHsp protein family, only 17 of the 22 genes from this species are shown in the results represented in Figure 1.
Accession numbers of sHsp genes from rice were: Os16.9 I [Os01g0136100], Os16.91 I [Os01g0136000], Os16.92 I[Os01g0136200], Os16.93I [Os01g0135900], Os17.4A I [Os03g0266900], Os17.4B I[Os03g0267200], Os17.4C I [Os03g0267000], Os17.4D I [Os03g0266300], Os17.6C II[Os02g0217900], Os17.8II [Os01g0184100], Os17.6B III [Os02g0782500], Os18.8 IV [Os07g0517100], Os22.2 V [Os05g0500500], Os17.6 PX [Os06g0253100], Os22.3 ER [Os04g0445100], Os26 CP [Os03g0245800], Os22 MT [Os02g0758000], Os22.4 MT [Os06g0219500], Os16.9C [Os02g0711300], Os17.6A [Os01g0135800], Os18 [Os11g0244200], Os18.2 [Os02g128000], Os21.2 [Os02g0107100]. Accession numbers of sHsp genes from Arabidopsis were: AtHsp17.4I [At3g46230], AtHsp18.1I [At5g59720], AtHsp17.6BI [At2g29500], AtHsp17.6AI [At1g59860], AtHsp17.8I [At1g07400], AtHsp17.6CI [At1g53540], AtHsp18.5VI [At2g19310], AtHsp22.0ER [At4g10250], AtHsp15.4IV [At4g21870], AtHsp15.7PX [At5g37670], AtHsp21.7 V [At5g54660], AtHsp17.4III [At1g54050], AtHsp17.6II [At5g12020], AtHsp17.7II [At5g12030], AtHsp14.2 [At5g47600], AtHsp26.5 [At1g52560], AtHsp21CP [At4g27670], AtHsp23.5MT [At5g51440], AtHsp23.6MT [At4g25200]. Accession numbers from the deduced sHsp proteins of P. patens are listed in Table 1.
Construct design for targeted gene disruption of PpHsp16.4 in P. patens
The construct for disruption of PpHsp16.4 was done using the vector pUBW302 , containing the nptII gene driven by the constitutive 35S promoter and the 3′UTR of the ocs gene. A 792 bp genomic fragment from the 5′region of the PpHsp16.4 gene (bases -711 to 79 bases from the start codon) was cloned upstream from the 35S promoter, whereas a 876 bp DNA fragment corresponding to bases 292 to 1168 of the genomic sequence of the gene was inserted downstream of the ocs terminator signal. The genomic sequence for the 5′ insertion was PCR amplified using gene-specific primers containing sequences for restriction enzymes KpnI (forward primer “ccggtacccatccattgatctaac”) and HindIII (reverse primer “cacaagcttctgggactgtggat”) to facilitate the subsequent cloning of the fragment. The 3′sequence of the gene was PCR amplified from genomic DNA using the forward primer “tgtggatccggactaccaattgtgact” and reverse primer “acagcggccgcactagcacctcccaa”, and cloned in pUBW302 vector using BamHI and NotI restriction enzymes.
Construct design for PpHsp16.4-Citrine in vivo fusion in P. patens
For the knock-in gene fusion construct we used the vector pCTRN-NPTII 2, generated by Makino H. et al. and acquired from the Physcobase clone collection (http://moss.nibb.ac.jp). A DNA fragment corresponding to bases -25 to 967 (from the start codon) of the genomic sequence of PpHsp16.4, including the entire coding sequence of the gene and lacking the stop codon, was PCR amplified from P. patens genomic DNA using the primers “gtggtaccttggtcaacttgagagaa” (forward) and “atcgatatctccccccatagtcacctc” (reverse), containing KpnI and EcoRV restriction sites, respectively. This fragment was cloned upstream and in frame with the Citrine gene of the vector pCTRN-NPTII 2. Subsequently, a 1131 bp 3′region of PpHsp16.4 genomic locus, including the 3′UTR of the gene and part of the adjacent genomic sequence (bases 995 to 2099), was amplified by PCR using the primers “acaggatccgggctctctagaaatgac” (forward) and “ttcgcggccgcaagcttttggtttatg” (reverse), which contained restriction sites for BamHI and NotI, respectively. This fragment was inserted downstream of the nptII selection cassette of the vector in order to direct two events of homologous recombination in the PpHsp16.4 locus.
Generation of P. patenstransgenic lines
The generation of moss protoplasts and the subsequent transformation were done as described by Schaefer et al . Briefly, isolated protoplasts (final concentration of 1.6x106 per ml) were incubated with 30 μg of linearized plasmid DNA (digested with KpnI). After polyethylene glycol treatment, protoplasts were incubated for 7 days at 22°C on BCDAT medium supplemented with 10 mM CaCl2 and 0.44 M mannitol. Protoplasts were thereafter transferred to BCDAT medium supplemented with 40 μg mL-1 of G418 and cultured for 10 days. Protoplasts were subsequently allowed to grow for 10 days on BCDAT medium without selection and finally returned to BCDAT medium containing 40 μg mL-1 of G418. Plants showing growth after two weeks on selection medium were analyzed for the correct incorporation of the transgene on the PpHsp16.4 locus.
Molecular characterization of knockout mutants
The incorporation of the gene targeting construct in the PpHsp16.4 locus was confirmed by PCR amplification of genomic DNA using the following primers: (a) “ataaaaacaaataaatacaaaaacct” or (e) “catccattctacttgttgaaccacct”, forward primers for PpHsp16.4a or PpHsp16.4b, respectively, in combination with the reverse primer (c) “ctttctctgtgttcttgatgcagttag”. To identify possible head-to-tail concatemers we used primer (c) together with primer (d) “ctacccgtgatattgctgaagagc”. Full lenght genomic sequences were amplified by using primer (a) with primer (b) “tatagatattccttatattcaactcaa“ for PpHsp16.4a, and primer (e) together with (f) “catcttcttgcattattcttggggg” for PpHsp16.4b gene. To verify the lack of functional PpHsp16.4a and PpHsp16.4b genes due to targeted gene disruption in the P. patens mutants, total RNA was isolated from wild-type and mutant genotypes, treated with 50 μM ABA for 24 hours. Northern blot analysis were performed as described below in this section, using the full length cDNA sequence of PpHsp16.4 radiolabeled as a probe.
Total RNA was isolated from control or treated P. patens tissues corresponding to 20 to 30 colonies, using standard procedures based on phenol/chloroform extraction followed by LiCl precipitation. Ten μg of total RNA separated in denaturing formaldehyde agarose gels were transferred to nylon membranes (Hybond XL, Amersham Pharmacia Biotech), according to Sambrook et al . Membranes were prehybridized at 65°C in 5× SSPE, 5× Denhardt’s solution, 0.2% SDS and 0.5 mg mL-1 denatured salmon sperm DNA. Hybridizations were performed at 65°C overnight. The DNA fragments corresponding to full-length cDNA sequences of PpHsp16.4 or PpDHNA [EMBL:AAR13080.1 or Phypa_221321] were labeled with [α32P]-dCTP using the Rediprime II random priming labeling system (Amersham Pharmacia Biotech) and used as probe in these studies. Filters were washed twice for 30 min at 65°C with 5× SSC-0.5% SDS, and twice using the same conditions with 1× SSC-0.5% SDS, and exposed in autoradiography films. Ethidium bromide staining was used to ensure equal amounts of loading of RNA in the samples.
Genomic DNA was extracted as described by Dellaporta et al  with an additional RNase treatment and phenol extraction using fresh plant material. The genomic DNA was analyzed by digesting 10 μg with BamHI and PstI restriction enzymes. Restricted DNA was separated in 1% agarose gels and transferred into nylon filters (Hybond XL, Amersham Pharmacia Biotech) according to Sambrook et al . Membranes were prehybridized and hybridized as described for the Northern blot analysis. A DNA fragment corresponding to an NcoI restriction fragment consisting on part of the 35S promoter and the nptII gene from the selection cassette, was labeled with [α32P]-dCTP using the Rediprime II random priming labeling system (Amersham Pharmacia Biotech) and used as probe in these studies.
Molecular characterization of P. patensPpHsp16.4-Citrine knock-in lines
The incorporation of the gene targeting construct PpHsp16.4-Citrine in the PpHsp16.4 locus was confirmed by PCR amplification of genomic DNA using the following primers: (g) “ccggtacccatccattgatctaac” and (h) “cgccctcgccggacacgctgaact”, specific for a genomic region upstream the targeting construct and the Citrine gene, respectively. To verify the correct expression of PpHsp16.4:Citrine in P. patens knock-in lines, Western blots were performed with protein samples extracted from transgenic lines untreated controls, or treated with 50 μM ABA, incubated at 37°C or in 300 mM NaCl or 500 mM mannitol containing plates for 24 hours. Furthermore, plants were incubated for 48 h, at 37°C and thereafter transferred to optimal growth conditions for 6 hours, to determine the fusion protein levels during stress recovery. Western blot analysis were performed as described in Saavedra et al . Briefly, soluble plant proteins were extracted in 50 mM Tris–HCl pH 7.2, 250 mM sucrose, 5 mM EDTA pH 8.0, 10 mM β-mercaptoethanol, 10 mM MgCl2, 1 mM CaCl2 and 1 mM PMSF. Ten μg of soluble proteins were separated in 10% polyacrylamide gels and electroblotted onto nitrocellulose membranes (Hybond-ECL, Amersham, GE Healthcare). Blots were incubated with 0.5% Ponceau red for 10 minutes and washed with distilled water. Ponceau staining of ribulose-1,5-bis-phosphate carboxylase/oxygenase (Rubisco) large subunit served as loading controls. Membranes were blocked in Tris-buffered saline (TBS, 20 mM Tris–HCl, 150 mM NaCl pH 7.4) containing 5% (weight in volume, w/v) skimmed milk powder and 0.2% Tween-20 for one hour at room temperature. The primary antibodies used in this study were the commercial anti-GFP antibody produced in rabbit (Sigma Aldrich), 1 mg/ml stock, diluted 1/4000 in TBS, 0.1% Tween, or the polyclonal antisera anti-PpDHNA , diluted 1/1500. Horseradish peroxidase-labeled goat anti-rabbit antibody (Sigma Aldrich) diluted 1/10000 in TBS-Tween 0.1% was used as secondary antibody. Protein reactions were visualized in autoradiography films using the ECL detection system.
Construct design for cDNA fusion with GFP
Full length cDNA of PpHsp16.4, lacking the stop codon, was PCR amplified from total ARN samples extracted from P. patens treated with 50 μM ABA for 24 hours, using the following primers: forward “gtggatccttggtcaacttgagag” and reverse “atatctcgagtgctttccccccatagtcac”. The resulting PCR fragment was cloned using BamHI and XhoI restriction enzymes into the pENTR2B entry vector (Gateway, Invitrogen). This construct was thereafter used for LR-mediated recombination of PpHsp16.4 cDNA sequence into the pK7FWG2 destination binary vector , containing the GFP coding sequence under the regulation of the 35S promoter. The PpHsp16.4 cDNA sequence was fused in frame to the 5’ end of GFP, resulting in the chimeric gene 35S:PpHsp16.4-GFP. The resulting construct was introduced in Agrobacterium tumefaciens strain pGV3101/pMP90  by electroporation.
Arabidopsistransformation and molecular characterization of transgenic lines
The 35S:PpHsp16.4-GFP construct was introduced into Arabidopsis (Col-0) by Agrobacterium-mediated floral dip transformation method . T1 seeds of infiltrated plants were collected and selected by germination on agar-solidified half strength MS medium containing 0.5% sucrose and 50 mg L-1 kanamycin. Subsequently, 50 kanamycin resistant seedlings were transferred into soil to produce seeds. Homozygous transgenic lines were produced from kanamycin resistant T2 seedlings and used for further analysis. Ten individual resistant lines of each construct were selected for detail molecular analysis. Expression of the transgenes and presence of the PpHsp16.4-GFP fusion protein was tested in 10 independent lines by RT-PCR and western blot analysis.
Phenotypic characterization of PpHsp16.4knockout mutants
For osmotic stress, wild type and mutant genotypes from P. patens were grown for 3 weeks on cellophane overlaid BCDAT medium and thereafter transferred to 900 mM mannitol supplemented plates for 10 days. Plant survival was tested by transferring stressed colonies back to standard medium and monitored up to 17 days of recovery. For salt stress, a similar procedure was employed, but using 500 mM NaCl as a stressor. Heat stress was performed similarly, but incubating the plates at 37°C for 7 days.
Chlorophyll content, fresh weight and dry weight of plants were determined in three independent experiments using 3 plates containing 5 colonies per genotype per treatment and per time point. Dry weight was measured after incubation of individual plant colonies on cellophane discs for 16 h at 80°C. For the determination of chlorophyll content, each plant was ground up in a mortar containing 5 ml of 80% (volume in volume, v/v) acetone and the homogenized plant material was filtered to remove cell debris. Total chlorophyll was calculated as chlorophyll a + chlorophyll b (mg g-1 fresh weight) using the following formula: Chla mg g-1 = [(12.7 × Abs663) – (2.6 × Abs645)] × ml acetone mg-1 fresh tissue; Chlb mg g-1 = [(22.9 × Abs645) – (4.68 × Abs663)] × ml acetone mg-1 fresh tissue.
Subcellular localization of PpHsp16.4-GFP in tobacco and Arabidopsis
For transient expression experiments, tobacco leaf protoplasts were obtained from in vitro grown plants and electroporated with the construct 35S:PpHsp16.4-GFP or 35S:GFP, following the procedure described in . Protoplasts were analyzed 24 hours after transfection by confocal laser microscopy. For agroinfiltration experiments, soil-grown tobacco plants were infiltrated with Agrobacterium tumefaciens cultures containing the construct 35S:PpHsp16.4-GFP as described . Two days after infiltration, tobacco leaf squares were mounted in tap water and analyzed by confocal laser microscopy for GFP fluorescence.
Stable Arabidopsis transgenic lines, overexpressing PpHsp16.4-GFP were grown in vitro for 6 days and root and hypocotyl sections were mounted in tap water and analyzed by confocal microscopy. Confocal imaging was performed using a confocal laser scanning microscope Leica TCS-SP5, with an excitation of 488 nm for GFP.
Spatial and subcellular localization of PpHsp16.4:Citrine proteins in transgenic knock-in P. patens
Twenty 20 days old colonies of transgenic P. patens lines, expressing PpHsp16.4-Citrine, under the control of the native promoter of the target gene, were used to examine the expression and localization pattern of the fusion protein in protonema filaments and in the leafy gametophyte. Stress treatments were done for 24 hours by transferring plants to 500 mM mannitol supplemented media for osmotic stress, or by incubating them at 37°C. Protoplasts from P. patens transgenic knock-in lines were obtained as described above for the generation of P. patens transgenic lines. In vivo fluorescence microscopic observations were made using confocal laser scanning microscope Leica TCS-SP5, using 488 nm for the fluorescence excitation of Citrine.
This work was supported by ICGEB-TWAS Plant Biotechnology Program (ICGEB CRP.PB/URU06-01), ANII Fondo Clemente Estable 2007 FCE 534, CSIC Grupos I + D 2010-Borsani, Programa de Desarrollo de Ciencias Básicas (PEDECIBA) and Programa de Posgrado de la CSIC-Udelar. We wish to thank Prof. Ralph S. Quatrano for kindly providing the abi3 line and Prof. Jürgen Denecke for his help with protein localization analysis. We thank Juan Pablo Gallino for his help in the statistical analysis.
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