Zhang B, Pan X, Cannon CH, Cobb GP, Anderson TA: Conservation and divergence of plant microRNA genes. Plant J. 2006, 46: 243-259. 10.1111/j.1365-313X.2006.02697.x.
Article
PubMed
CAS
Google Scholar
Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP: Prediction of plant microRNA targets. Cell. 2002, 110: 513-520. 10.1016/S0092-8674(02)00863-2.
Article
PubMed
CAS
Google Scholar
Xie K, Wu C, Xiong L: Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. Plant Physiol. 2006, 142: 280-293. 10.1104/pp.106.084475.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gandikota M, Birkenbihl RP, Hohmann S, Cardon GH, Saedler H, Huijser P: The miRNA156/157 recognition element in the 3’UTR of the Arabidopsis SBP box geneSPL3prevents early flowering by translational inhibition in seedlings. Plant J. 2007, 49: 683-693. 10.1111/j.1365-313X.2006.02983.x.
Article
PubMed
CAS
Google Scholar
Cardon G, Höhmann S, Klein J, Nettesheim K, Sardler H, Huijser P: Molecular characterisation of theArabidopsisSBP-box genes. Gene. 1999, 237: 91-104. 10.1016/S0378-1119(99)00308-X.
Article
PubMed
CAS
Google Scholar
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, Weigel D: Specific effects of microRNAs on the plant transcriptome. Dev Cell. 2005, 8: 517-527. 10.1016/j.devcel.2005.01.018.
Article
PubMed
CAS
Google Scholar
Guo AY, Zhu QH, Gu X, Ge S, Yang J, Luo J: Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family. Gene. 2008, 418: 1-8. 10.1016/j.gene.2008.03.016.
Article
PubMed
CAS
Google Scholar
Wang JW, Czech B, Weigel D: miR156-Regulated SPL transcription factors define an endogenous flowering pathway inArabidopsis thaliana. Cell. 2009, 138: 738-749. 10.1016/j.cell.2009.06.014.
Article
PubMed
CAS
Google Scholar
Wu G, Park MY, Conway SR, Wang J-W, Weigel D, Poethig RS: The sequential action of miR156 and miR172 regulates developmental timing inArabidopsis. Cell. 2009, 138: 750-759. 10.1016/j.cell.2009.06.031.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gou J-Y, Felippes FF, Liu C-J, Weigel D, Wang J-W: Negative regulation of anthocyanin biosynthesis inArabidopsisby a miR156-targeted SPL transcription factor. Plant Cell. 2011, 23: 1512-1522. 10.1105/tpc.111.084525.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cardon G, Höhmann S, Nettesheim K, Saedler H, Huijser P: Functional analysis of theArabidopsis thalianaSBP-box geneSPL3: A novel gene involved in the floral transition. Plant J. 1997, 12: 367-377. 10.1046/j.1365-313X.1997.12020367.x.
Article
PubMed
CAS
Google Scholar
Wu G, Poethig RS: Temporal regulation of shoot development inArabidopsis thalianabymiR156and its targetSPL3. Development. 2006, 133: 3539-3547. 10.1242/dev.02521.
Article
PubMed
CAS
PubMed Central
Google Scholar
Schwarz S, Grande AV, Bujdoso N, Saedler H, Huijser P: The microRNA regulated SBP-box genesSPL9andSPL15control shoot maturation in Arabidopsis. Plant Mol Biol. 2008, 67: 183-195. 10.1007/s11103-008-9310-z.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wang JW, Schwab R, Czech B, Mica E, Weigel D: Dual effects of miR156-targetedSPLgenes andCYP78A5/KLUHon plastochron length and organ size inArabidopsis thaliana. Plant Cell. 2008, 20: 1231-1243. 10.1105/tpc.108.058180.
Article
PubMed
CAS
PubMed Central
Google Scholar
Shikata M, Koyama T, Mitsuda N, Ohme-Takagi M: Arabidopsis SBP-box genesSPL10,SPL11andSPL2control morphological change in association with shoot maturation in the reproductive phase. Plant Cell Physiol. 2009, 50: 2133-2145. 10.1093/pcp/pcp148.
Article
PubMed
CAS
Google Scholar
Yu N, Cai WJ, Wang S, Shan CM, Wang LJ, Chen XY: Temporal control of trichome distribution by microRNA156-targetedSPLgenes inArabidopsis thaliana. Plant Cell. 2010, 22: 2322-2335. 10.1105/tpc.109.072579.
Article
PubMed
CAS
PubMed Central
Google Scholar
Booker J, Auldridge M, Wills S, McCarty D, Klee H, Leyser O: MAX3/CCD7 is a carotenoid cleavage dioxygenase required for the synthesis of a novel plant signaling molecule. Curr Biol. 2004, 14: 1232-1238. 10.1016/j.cub.2004.06.061.
Article
PubMed
CAS
Google Scholar
Booker J, Sieberer T, Wright W, Williamson L, Willett B, Stirnberg S, Turnbull C, Srinivasan P, Goddard P, Leyser O: MAX1encodes a cytochrome P450 family member that acts downstream ofMAX3/4to produce a carotenoid-derived branch-inhibiting hormone. Del Cell. 2005, 8: 443-449. 10.1016/j.devcel.2005.01.009.
Article
CAS
Google Scholar
Sorefan K, Booker J, Haurogné K, Goussot M, Bainbridge K, Foo E, Chatfield S, Ward S, Beveridge C, Rameau C, Leyser O: MAX4andRMS1are orthologous dioxygenase-like genes that regulate shoot branching inArabidopsisand pea. Genes Dev. 2003, 17: 1469-1474. 10.1101/gad.256603.
Article
PubMed
CAS
PubMed Central
Google Scholar
Umehara M, Hanada A, Yoshida S, Akiyama K, Arite T, Takeda-Kamiya N, Magome H, Kamiya Y, Shirasu K, Yoneyama K, Kyozuka J, Yamaguchi S: Inhibition of shoot branching by new terpenoid plant hormones. Nature. 2008, 455: 195-200. 10.1038/nature07272.
Article
PubMed
CAS
Google Scholar
Gomez-Roldan V, Fermas S, Brewer PB, Puech-Pagès V, Dun EA, Pillot JP, Letisse F, Matusova R, Danoun S, Portais JC, Bouwmeester H, Bécard G, Beveridge CA, Rameau C, Rochange SF: Strigolactone inhibition of shoot branching. Nature. 2008, 455: 189-194. 10.1038/nature07271.
Article
PubMed
CAS
Google Scholar
Wei S, Yu B, Gruber MY, Khachatourians GG, Hegedus DD, Hannoufa A: Enhanced seed carotenoid levels and branching in transgenicBrassica napusexpressing theArabidopsis miR156bgene. J Agric Food Chem. 2010, 58: 9572-9578. 10.1021/jf102635f.
Article
PubMed
CAS
Google Scholar
Robinson SJ, Tang LH, Mooney BA, McKay SJ, Clarke WE, Links MG, Karcz S, Regan S, Wu YY, Gruber MY, Cui D, Yu M, Parkin IA: An archived activation tagged population ofArabidopsis thalianato facilitate forward genetics approaches. BMC Plant Biol. 2009, 9: 101-10.1186/1471-2229-9-101.
Article
PubMed
PubMed Central
Google Scholar
Auldridge ME, Block A, Vogel JT, Dabney-Smith C, Mila I, Bouzayen M, Magallanes-Lundback M, DellaPenna D, McCarty DR, Klee HJ: Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family. Plant J. 2006, 45: 982-993. 10.1111/j.1365-313X.2006.02666.x.
Article
PubMed
CAS
Google Scholar
Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC: The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Mol Biol Evol. 2003, 20: 735-747. 10.1093/molbev/msg088.
Article
PubMed
CAS
Google Scholar
Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G: Arabidopsistranscription factors: genome-wide comparative analysis among eukaryotes. Science. 2000, 290: 2105-2110. 10.1126/science.290.5499.2105.
Article
PubMed
CAS
Google Scholar
Eshed Y, Baum SF, Perea JV, Bowman JL: Establishment of polarity in lateral organs of plants. Curr Biol. 2001, 11: 1251-1260. 10.1016/S0960-9822(01)00392-X.
Article
PubMed
CAS
Google Scholar
Quinn JM, Barraco P, Eriksson M, Merchant S: Coordinate copper- and oxygen-responsiveCyc6andCpx1expression inChlamydomonasis mediated by the same element. J Biol Chem. 2000, 275: 6080-6089. 10.1074/jbc.275.9.6080.
Article
PubMed
CAS
Google Scholar
Kropat J, Tottey S, Birkenbihl RP, Depège N, Huijser P, Merchant S: A regulator of nutritional copper signaling inChlamydomonasis an SBP domain protein that recognizes the GTAC core of copper response element. Proc Natl Acad Sci U S A. 2005, 102: 18730-18735. 10.1073/pnas.0507693102.
Article
PubMed
CAS
PubMed Central
Google Scholar
Klein J, Saedler H, Huijser P: A new family of DNA binding proteins includes putative transcriptional regulators of theAntirrhinum majusfloral meristem identity geneSQUAMOSA. Mol Gen Genet. 1996, 250: 7-16.
PubMed
CAS
Google Scholar
Liang X, Nazarenus TJ, Stone JM: Identification of a consensus DNA-binding site for theArabidopsis thalianaSBP domain transcription factor, AtSPL14, and binding kinetics by surface plasmon resonance. Biochemistry. 2008, 47: 3645-3653. 10.1021/bi701431y.
Article
PubMed
CAS
Google Scholar
Yamasaki H, Hayashi M, Fukazawa M, Kobayashi Y, Shikanai T: SQUAMOSApromoter binding protein-like7 is a central regulator for copper homeostasis inArabidopsis. Plant Cell. 2009, 21: 347-361. 10.1105/tpc.108.060137.
Article
PubMed
CAS
PubMed Central
Google Scholar
Crooks G, Hon G, Chandonia JM, Brenner SE: WebLogo: a sequence logo generator. Genome Res. 2004, 14: 1188-1190. 10.1101/gr.849004.
Article
PubMed
CAS
PubMed Central
Google Scholar
Schwab R: Functions and target selection of Arabidopsis microRNAs. 2006, Tübingen Germany: Eberhard Karls University, PhD thesis
Google Scholar
Chuck G, Cigan AM, Saeteurn K, Hake S: The heterochronic maize mutantCorngrass1results from overexpression of a tandem microRNA. Nat Genet. 2007, 39: 544-549. 10.1038/ng2001.
Article
PubMed
CAS
Google Scholar
Cazzonelli CI, Cuttriss AJ, Cossetto SB, Pye W, Crisp P, Whelan J, Finnegan EJ, Turnbull C, Pogson BJ: Regulation of carotenoid composition and shoot branching inArabidopsisby a chromatin modifying histone methyltransferase, SDG8. Plant Cell. 2009, 21: 39-53. 10.1105/tpc.108.063131.
Article
PubMed
CAS
PubMed Central
Google Scholar
Rodríguez-Villalón A, Gas E, Rodríguez-Concepción M: Phytoene synthase activity controls the biosynthesis of carotenoids and the supply of their metabolic precursors in dark-grown Arabidopsis seedlings. Plant J. 2009, 60: 424-435. 10.1111/j.1365-313X.2009.03966.x.
Article
PubMed
Google Scholar
Paolillo DJ, Garvin DF, Parthasarathy MV: The chromoplasts of Or mutants of cauliflower (Brassica oleracea. Var. Botrytis). Protoplasma. 2004, 224: 245-253. 10.1007/s00709-004-0059-1.
Article
PubMed
Google Scholar
Li Q, Farre G, Naqvi S, Breitenbach J, Sanahuja G, Bai C, Sandmann G, Capell T, Christou P, Zhu C: Cloning and functional characterization of the maize carotenoid isomerase and β-carotene hydroxylase genes and their regulation during endosperm maturation. Transgenic Res. 2010, 19: 1053-1068. 10.1007/s11248-010-9381-x.
Article
PubMed
CAS
Google Scholar
Tian L, DellaPenna D: Characterization of a second carotenoid βhydroxylase gene from Arabidopsis and its relationship to theLUT1locus. Plant Mol Biol. 2001, 47: 379-388. 10.1023/A:1011623907959.
Article
PubMed
CAS
Google Scholar
Yu B, Lydiate DJ, Schäfer UA, Hannoufa A: Characterization of a β-carotene hydroxylase ofAdonis aestivalisand its expression inArabidopsis thaliana. Planta. 2007, 226: 181-192. 10.1007/s00425-006-0455-1.
Article
PubMed
CAS
Google Scholar
Howitt CA, Pogson BJ: Carotenoid accumulation and function in seed and non-green tissues. Plant Cell Environ. 2006, 29: 435-445. 10.1111/j.1365-3040.2005.01492.x.
Article
PubMed
CAS
Google Scholar
Galpaz N, Ronen G, Khalfa Z, Zamir D, Hirschberg J: A chromoplast-specific carotenoid biosynthesis revealed by cloning of the tomatowhite-flowerlocus. Plant Cell. 2006, 18: 1947-1960. 10.1105/tpc.105.039966.
Article
PubMed
CAS
PubMed Central
Google Scholar
Lopez AB, Van Eck J, Conlin BJ, Paolillo DJ, O'Neill J, Li L: Effect of the cauliflowerOrtransgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers. J Exp Bot. 2008, 59: 213-223. 10.1093/jxb/erm299.
Article
PubMed
CAS
Google Scholar
Young AJ: Factors that affect the carotenoid composition of higher plants and algae. Carotenoids in photosynthesis. Edited by: Young AJ, Britton G. London: Chapman and Hall, 1993:161-205.
Chapter
Google Scholar
Römer S, Lübeck J, Kauder F, Steiger S, Adomat C, Sandmann G: Genetic engineering of a zeaxanthin-rich potato by antisense inactivation and co-suppression of carotenoid epoxidation. Metab Eng. 2002, 4: 263-272. 10.1006/mben.2002.0234.
Article
PubMed
Google Scholar
Vishnevetsky M, Ovadis M, Vainstein A: Carotenoid sequestration in plants: the role of carotenoid-associated proteins. Trends Plant Sci. 1999, 4: 232-235. 10.1016/S1360-1385(99)01414-4.
Article
PubMed
Google Scholar
Byrne ME, Barley R, Curtis M, Arroyo JM, Dunham M, Hudson A, Martienssen RA: Asymmetric leaves1mediates leaf patterning and stem cell function inArabidopsis. Nature. 2000, 408: 967-971. 10.1038/35050091.
Article
PubMed
CAS
Google Scholar
Usami T, Horiguchi G, Yano S, Tsukaya H: Themore and smaller cellsmutants ofArabidopsis thalianaidentify novel roles forSQUAMOSA PROMOTER BINDING PROTEIN-LIKEgenes in the control of heteroblasty. Development. 2009, 136: 955-964. 10.1242/dev.028613.
Article
PubMed
CAS
Google Scholar
Kim J, Inoue K, Ishii J, Vanti WB, Voronov SV, Murchison E, Hannon G, Abeliovich A: A MicroRNA feedback circuit in midbrain dopamine neurons. Science. 2007, 317: 1220-1224. 10.1126/science.1140481.
Article
PubMed
CAS
PubMed Central
Google Scholar
Varghese J, Cohen SM: microRNA miR-14 acts to modulate a positive autoregulatory loop controlling steroid hormone signaling inDrosophila. Genes Dev. 2007, 21: 2277-2282. 10.1101/gad.439807.
Article
PubMed
CAS
PubMed Central
Google Scholar
Birkenbihl RP, Jach G, Saedler H, Huijser P: Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains. J Mol Biol. 2005, 352: 585-596. 10.1016/j.jmb.2005.07.013.
Article
PubMed
CAS
Google Scholar
Moseley JL, Page MD, Alder NP, Eriksson M, Quinn J, Soto F, Theg M, Hippler M, Merchant S: Reciprocal expression of two candidate di-iron enzymes affecting photosystem I and light-harvesting complex accumulation. Plant Cell. 2002, 14: 673-688. 10.1105/tpc.010420.
Article
PubMed
CAS
PubMed Central
Google Scholar
Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, Harrison MJ, Lamb CJ, Yanofsky MF, Chory J: Activation tagging in Arabidopsis. Plant Physiol. 2000, 122: 1003-1014. 10.1104/pp.122.4.1003.
Article
PubMed
CAS
PubMed Central
Google Scholar
Shahmuradov IA, Gammerman AJ, Hancock JM, Bramley PM, Solovyev VV: PlantProm: a database of plant promoter sequences. Nucleic Acids Res. 2003, 31: 114-117. 10.1093/nar/gkg041.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wang XJ, Reyes JL, Chua NH, Gaasterland T: Prediction and identification ofArabidopsis thalianamicroRNAs and their mRNA targets. Genome Biol. 2004, 5: R65-10.1186/gb-2004-5-9-r65.
Article
PubMed
PubMed Central
Google Scholar
Schmittgen TD, Jiang J, Liu Q, Yang L: A high-throughput method to monitor the expression of microRNA precursors. Nucleic Acids Res. 2004, 32: e43-10.1093/nar/gnh040.
Article
PubMed
PubMed Central
Google Scholar
Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR: Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 2005, 139: 5-17. 10.1104/pp.105.063743.
Article
PubMed
CAS
PubMed Central
Google Scholar
Frangioni JV, Neel BG: (1993) Solubilization and purification of enzymatically active glutathione S-transferase (pGEX) fusion proteins. Anal Biochem. 1993, 210: 179-187. 10.1006/abio.1993.1170.
Article
PubMed
CAS
Google Scholar