Björk GR: Transfer RNA modification in different organisms. Chem Scripta. 1986, 26: 91-95.
Google Scholar
Björk GR, Ericson JU, Gustafsson CE, Hagervall TG, Jonsson YH, Wikstrom PM: Transfer RNA modification. Annu Rev Biochem. 1987, 56: 263-287. 10.1146/annurev.bi.56.070187.001403.
Article
PubMed
Google Scholar
Montasser Kouhsari S, Keith G, Weil JH: Methylation of yeast tRNAPhe by enzymes from cytoplasm, chloroplasts and mitochondria of Phaseolus vulgaris. Biochim Biophys Acta. 1978, 521 (2): 576-583.
Article
PubMed
CAS
Google Scholar
Huang B, Lu J, Byström AS: A genome-wide screen identifies genes required for formation of the wobble nucleoside 5-methoxycarbonylmethyl-2-thiouridine in Saccharomyces cerevisiae. RNA. 2008, 14 (10): 2183-2194. 10.1261/rna.1184108.
Article
PubMed
CAS
PubMed Central
Google Scholar
Persson BC, Gustafsson C, Berg DE, Björk GR: The gene for a tRNA modifying enzyme, m5U54-methyltransferase, is essential for viability in Escherichia coli. Proc Natl Acad Sci USA. 1992, 89 (9): 3995-3998. 10.1073/pnas.89.9.3995.
Article
PubMed
CAS
PubMed Central
Google Scholar
Anderson J, Phan L, Cuesta R, Carlson BA, Pak M, Asano K, Björk GR, Tamame M, Hinnebusch AG: The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. Genes Dev. 1998, 12 (23): 3650-3662. 10.1101/gad.12.23.3650.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gerber AP, Keller W: An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science. 1999, 286 (5442): 1146-1149. 10.1126/science.286.5442.1146.
Article
PubMed
CAS
Google Scholar
Gu W, Jackman JE, Lohan AJ, Gray MW, Phizicky EM: tRNAHis maturation: an essential yeast protein catalyzes addition of a guanine nucleotide to the 5' end of tRNAHis. Genes Dev. 2003, 17 (23): 2889-2901. 10.1101/gad.1148603.
Article
PubMed
CAS
PubMed Central
Google Scholar
Björk GR: Biosynthesis and function of modified nucleosides. tRNA: Structure, Biosynthesis, and Function. Washington, DC: American Society for Microbiology, 1995, 165-205.
Chapter
Google Scholar
Kitchingman GR, Fournier MJ: Modification-deficient transfer ribonucleic acids from relaxed control Escherichia coli: structures of the major undermodified phenylalanine and leucine transfer RNAs produced during leucine starvation. Biochemistry. 1977, 16 (10): 2213-2220. 10.1021/bi00629a027.
Article
PubMed
CAS
Google Scholar
Vold BS, Sypherd PS: Modification in transfer RNA during the differentiation of wheat seedlings. Proc Natl Acad Sci USA. 1968, 59 (2): 453-458. 10.1073/pnas.59.2.453.
Article
PubMed
CAS
PubMed Central
Google Scholar
Shugart L: A possible age-related modification of phenylalanine transfer RNA from wheat tissue. Exp Gerontol. 1972, 7 (4): 251-262. 10.1016/0531-5565(72)90015-0.
Article
PubMed
CAS
Google Scholar
Jones LH, Scott TK: Transfer Ribonucleic Acid Modification and Its Relationship to Tumorous and Nontumorous Plant Growth. Plant Physiol. 1981, 67 (3): 535-538. 10.1104/pp.67.3.535.
Article
PubMed
CAS
PubMed Central
Google Scholar
Maréchal-Drouard L, Weil JH, Guillemaut P: Import of several tRNAs from the cytoplasm into the mitochondria in bean Phaseolus vulgaris. Nucleic Acids Res. 1988, 16 (11): 4777-4788. 10.1093/nar/16.11.4777.
Article
PubMed
PubMed Central
Google Scholar
Szweykowska-Kulinska Z, Krajewski J, Wypijewski K: Mutations of Arabidopsis thaliana pre-tRNA(Tyr) affecting pseudouridylation of U35. Biochim Biophys Acta. 1995, 1264 (1): 87-92.
Article
PubMed
Google Scholar
Yu YT, Shu MD, Steitz JA: Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J. 1998, 17 (19): 5783-5795. 10.1093/emboj/17.19.5783.
Article
PubMed
CAS
PubMed Central
Google Scholar
Huang ZP, Zhou H, Qu LH: Maintaining a conserved methylation in plant and insect U2 snRNA through compensatory mutation by nucleotide insertion. IUBMB Life. 2005, 57 (10): 693-699. 10.1080/15216540500306983.
Article
PubMed
CAS
Google Scholar
Iida K, Jin H, Zhu JK: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana. BMC Genomics. 2009, 10: 155-10.1186/1471-2164-10-155.
Article
PubMed
PubMed Central
Google Scholar
Chen Z, Zhang H, Jablonowski D, Zhou X, Ren X, Hong X, Schaffrath R, Zhu JK, Gong Z: Mutations in ABO1/ELO2, a subunit of holo-Elongator, increase abscisic acid sensitivity and drought tolerance in Arabidopsis thaliana. Mol Cell Biol. 2006, 26 (18): 6902-6912. 10.1128/MCB.00433-06.
Article
PubMed
CAS
PubMed Central
Google Scholar
Raviprakash KS, Cherayil JD: 2'-O-methyl-1-methyl adenosine: a new modified nucleoside in ragi (Eleusine coracana) tRNA. Biochem Biophys Res Commun. 1984, 121 (1): 243-248. 10.1016/0006-291X(84)90713-7.
Article
PubMed
CAS
Google Scholar
Walden TL, Howes N, Farkas WR: Purification and properties of guanine, queuine-tRNA transglycosylase from wheat germ. J Biol Chem. 1982, 257 (22): 13218-13222.
PubMed
CAS
Google Scholar
Miyawaki K, Tarkowski P, Matsumoto-Kitano M, Kato T, Sato S, Tarkowska D, Tabata S, Sandberg G, Kakimoto T: Roles of Arabidopsis ATP/ADP isopentenyltransferases and tRNA isopentenyltransferases in cytokinin biosynthesis. Proc Natl Acad Sci USA. 2006, 103 (44): 16598-16603. 10.1073/pnas.0603522103.
Article
PubMed
CAS
PubMed Central
Google Scholar
Boland C, Hayes P, Santa-Maria I, Nishimura S, Kelly VP: Queuosine formation in eukaryotic tRNA occurs via a mitochondria-localized heteromeric transglycosylase. J Biol Chem. 2009, 284 (27): 18218-18227. 10.1074/jbc.M109.002477.
Article
PubMed
CAS
PubMed Central
Google Scholar
Noma A, Kirino Y, Ikeuchi Y, Suzuki T: Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J. 2006, 25 (10): 2142-2154. 10.1038/sj.emboj.7601105.
Article
PubMed
CAS
PubMed Central
Google Scholar
de Crecy-Lagard V: Identification of genes encoding tRNA modification enzymes by comparative genomics. Methods Enzymol. 2007, 425: 153-183. full_text.
Article
PubMed
CAS
PubMed Central
Google Scholar
Xing F, Hiley SL, Hughes TR, Phizicky EM: The specificities of four yeast dihydrouridine synthases for cytoplasmic tRNAs. J Biol Chem. 2004, 279 (17): 17850-17860. 10.1074/jbc.M401221200.
Article
PubMed
CAS
Google Scholar
Johansson MJ, Byström A: Transfer RNA modifications and modifying enzymes in Saccharomyces cerevisiae. Fine-Tuning of RNA Functions by Modification and Editing. 2005, 12: 87-120.
CAS
Google Scholar
Jackman JE, Montange RK, Malik HS, Phizicky EM: Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9. RNA. 2003, 9 (5): 574-585. 10.1261/rna.5070303.
Article
PubMed
CAS
PubMed Central
Google Scholar
Björk GR, Jacobsson K, Nilsson K, Johansson MJ, Byström AS, Persson OP: A primordial tRNA modification required for the evolution of life?. EMBO J. 2001, 20 (1-2): 231-239. 10.1093/emboj/20.1.231.
Article
PubMed
PubMed Central
Google Scholar
Purushothaman SK, Bujnicki JM, Grosjean H, Lapeyre B: Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA. Mol Cell Biol. 2005, 25 (11): 4359-4370. 10.1128/MCB.25.11.4359-4370.2005.
Article
PubMed
CAS
PubMed Central
Google Scholar
Ellis SR, Morales MJ, Li JM, Hopper AK, Martin NC: Isolation and characterization of the TRM1 locus, a gene essential for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNA in Saccharomyces cerevisiae. J Biol Chem. 1986, 261 (21): 9703-9709.
PubMed
CAS
Google Scholar
Alexandrov A, Martzen MR, Phizicky EM: Two proteins that form a complex are required for 7-methylguanosine modification of yeast tRNA. RNA. 2002, 8 (10): 1253-1266. 10.1017/S1355838202024019.
Article
PubMed
CAS
PubMed Central
Google Scholar
Nordlund ME, Johansson JO, von Pawel-Rammingen U, Byström AS: Identification of the TRM2 gene encoding the tRNA(m5U54)methyltransferase of Saccharomyces cerevisiae. RNA. 2000, 6 (6): 844-860. 10.1017/S1355838200992422.
Article
PubMed
CAS
PubMed Central
Google Scholar
Motorin Y, Grosjean H: Multisite-specific tRNA:m5C-methyltransferase (Trm4) in yeast Saccharomyces cerevisiae: identification of the gene and substrate specificity of the enzyme. RNA. 1999, 5 (8): 1105-1118. 10.1017/S1355838299982201.
Article
PubMed
CAS
PubMed Central
Google Scholar
Gerber A, Grosjean H, Melcher T, Keller W: Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J. 1998, 17 (16): 4780-4789. 10.1093/emboj/17.16.4780.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wilkinson ML, Crary SM, Jackman JE, Grayhack EJ, Phizicky EM: The 2'-O-methyltransferase responsible for modification of yeast tRNA at position 4. RNA. 2007, 13 (3): 404-413. 10.1261/rna.399607.
Article
PubMed
CAS
PubMed Central
Google Scholar
Pintard L, Lecointe F, Bujnicki JM, Bonnerot C, Grosjean H, Lapeyre B: Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop. EMBO J. 2002, 21 (7): 1811-1820. 10.1093/emboj/21.7.1811.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kotelawala L, Grayhack EJ, Phizicky EM: Identification of yeast tRNA Um(44) 2'-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA(Ser) species. RNA. 2008, 14 (1): 158-169. 10.1261/rna.811008.
Article
PubMed
CAS
PubMed Central
Google Scholar
Cavaille J, Chetouani F, Bachellerie JP: The yeast Saccharomyces cerevisiae YDL112w ORF encodes the putative 2'-O-ribose methyltransferase catalyzing the formation of Gm18 in tRNAs. RNA. 1999, 5 (1): 66-81. 10.1017/S1355838299981475.
Article
PubMed
CAS
PubMed Central
Google Scholar
Jablonowski D, Fichtner L, Stark MJ, Schaffrath R: The yeast elongator histone acetylase requires Sit4-dependent dephosphorylation for toxin-target capacity. Mol Biol Cell. 2004, 15 (3): 1459-1469. 10.1091/mbc.E03-10-0750.
Article
PubMed
CAS
PubMed Central
Google Scholar
Huang B, Johansson MJ, Byström AS: An early step in wobble uridine tRNA modification requires the Elongator complex. RNA. 2005, 11 (4): 424-436. 10.1261/rna.7247705.
Article
PubMed
CAS
PubMed Central
Google Scholar
Johansson MJ, Byström AS: The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA. RNA. 2004, 10 (4): 712-719. 10.1261/rna.5198204.
Article
PubMed
CAS
PubMed Central
Google Scholar
Esberg B, Leung HC, Tsui HC, Björk GR, Winkler ME: Identification of the miaB gene, involved in methylthiolation of isopentenylated A37 derivatives in the tRNA of Salmonella typhimurium and Escherichia coli. J Bacteriol. 1999, 181 (23): 7256-7265.
PubMed
CAS
PubMed Central
Google Scholar
Dihanich ME, Najarian D, Clark R, Gillman EC, Martin NC, Hopper AK: Isolation and characterization of MOD5, a gene required for isopentenylation of cytoplasmic and mitochondrial tRNAs of Saccharomyces cerevisiae. Mol Cell Biol. 1987, 7 (1): 177-184.
Article
PubMed
CAS
PubMed Central
Google Scholar
Nelissen H, Clarke JH, De Block M, De Block S, Vanderhaeghen R, Zielinski RE, Dyer T, Lust S, Inzé D, Van Lijsebettens M: DRL1, a homolog of the yeast TOT4/KTI12 protein, has a function in meristem activity and organ growth in plants. Plant Cell. 2003, 15 (3): 639-654. 10.1105/tpc.007062.
Article
PubMed
CAS
PubMed Central
Google Scholar
Nelissen H, Fleury D, Bruno L, Robles P, De Veylder L, Traas J, Micol JL, Van Montagu M, Inze D, Van Lijsebettens M: The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth. Proc Natl Acad Sci USA. 2005, 102 (21): 7754-7759. 10.1073/pnas.0502600102.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zhou X, Hua D, Chen Z, Zhou Z, Gong Z: Elongator mediates ABA responses, oxidative stress resistance and anthocyanin biosynthesis in Arabidopsis. Plant J. 2009, 60 (1): 79-90. 10.1111/j.1365-313X.2009.03931.x.
Article
PubMed
CAS
Google Scholar
Barciszewska M, Dirheimer G, Keith G: The nucleotide sequence of methionine elongator tRNA from wheat germ. Biochem Biophys Res Commun. 1983, 114 (3): 1161-1168. 10.1016/0006-291X(83)90684-8.
Article
PubMed
CAS
Google Scholar
Guillemaut P, Weil JH: The nucleotide sequence of the maize and spinach chloroplast isoleucine transfer RNA encoded in the 16 S to 23 S rDNA spacer. Nucleic Acids Res. 1982, 10 (5): 1653-1659. 10.1093/nar/10.5.1653.
Article
PubMed
CAS
PubMed Central
Google Scholar
Zurawski G, Bottomley W, Whitfeld PR: Junctions of the large single copy region and the inverted repeats in Spinacia oleracea and Nicotiana debneyi chloroplast DNA: sequence of the genes for tRNAHis and the ribosomal proteins S19 and L2. Nucleic Acids Res. 1984, 12 (16): 6547-6558. 10.1093/nar/12.16.6547.
Article
PubMed
CAS
PubMed Central
Google Scholar
Wakasugi Tatsuya, Ohme Masaru, Shinozaki Kazuo, Sugiura M: Structures of tobacco chloroplast genes for tRNAIle (CAU), tRNALeu (CAA), tRNACys (GCA), tRNASer (UGA) and tRNAThr (GGU): a compilation of tRNA genes from tobacco chloroplasts. Plant Molecular Biology. 1986, 7 (5): 385-392. 10.1007/BF00032568.
Article
PubMed
CAS
Google Scholar