Skip to main content
Download PDF

Circadian rhythm response and its effect on photosynthetic characteristics of the Lhcb family genes in tea plant

BMC Plant Biology volume 24, Article number: 333 (2024) Cite this article

Abstract

Background

The circadian clock, also known as the circadian rhythm, is responsible for predicting daily and seasonal changes in the environment, and adjusting various physiological and developmental processes to the appropriate times during plant growth and development. The circadian clock controls the expression of the Lhcb gene, which encodes the chlorophyll a/b binding protein. However, the roles of the Lhcb gene in tea plant remain unclear.

Results

In this study, a total of 16 CsLhcb genes were identified based on the tea plant genome, which were distributed on 8 chromosomes of the tea plant. The promoter regions of CsLhcb genes have a variety of cis-acting elements including hormonal, abiotic stress responses and light response elements. The CsLhcb family genes are involved in the light response process in tea plant. The photosynthetic parameter of tea leaves showed rhythmic changes during the two photoperiod periods (48 h). Stomata are basically open during the day and closed at night. Real-time quantitative PCR results showed that most of the CsLhcb family genes were highly expressed during the day, but were less expressed at night.

Conclusions

Results indicated that CsLhcb genes were involved in the circadian clock process of tea plant, it also provided potential references for further understanding of the function of CsLhcb gene family in tea plant.

Peer Review reports

Background

The circadian rhythm, also known as the circadian clock, is an endogenous timekeeping mechanism with a cycle of about 24 h (the relative length of day and night) [1]. In most plants, it’s able to predict daily and seasonal changes in the surrounding environment and adjust various physiological and developmental processes to the optimal time period [2]. The phenomenon of circadian clock has been observed in many organisms, such as plants [3,4,5,6]; cyanobacteria [7]; animals [8], etc. Diurnal regulation of photoreceptors and gene expression have been extensively studied in flowering plant systems, particularly in Arabidopsis thaliana. At present, studies on tea plant mainly focus on secondary metabolism, such as theanine and lignin synthesis etc [9,10,11], and relatively few researches about circadian rhythm in tea plant.

The tea plant [Camellia sinensis (L.) O. Kuntze] is an evergreen woody plant in the genus Camellia L. in the Theaceae family that is widely grown worldwide, especially in China. According to statistics of tea association, tea planting area in China has reached 3.1 million hm2. As one of the most important factors for plant growth and development, light can affect plant photosynthesis, morphological construction and accumulation of secondary metabolite in the plant [12]. The utilization efficiency of photosynthesis is an important factor affecting the growth and development of tea plant. During photosynthesis, photosynthetic parameters and stomatal opening of leaves will reflect the photosynthetic capacity of tea plant. Du et al. analyzed the transcriptome of 2 poplar progeny (ZT4, ZT16, ZT22) with different photosynthetic rates at 3 time points, and found that plant hormone signal transduction and transcription factors-related genes increased leaf size and stomatal movement, indicating that many potential key regulatory factors were closely related to chlorophyll content and photosynthesis [13].

Circadian clocks are regulated by several genes. Key genes controlling circadian clocks include Circadian clocks-associated 1 (CCA1), Late elongated hypocotyl (LHY), and Pseudo response regulators (PRRs) etc [14]. Initially, studies confirmed that CCA1 is a transcription factor binding to the promoter region of Lhcb1.3 gene of A. thaliana. CCA1 protein is a key element in the function of the photo pigmentation signal transduction pathway, leading to increased transcription of this Lhcb gene in A. thaliana [15]. Photosynthesis is also regulated by circadian rhythms, and proper circadian rhythm is beneficial to plant growth and development [16]. The expression of the genes involved in the light-harvesting chlorophyll-protein complex is also regulated by the circadian clock [17, 18]. In A. thaliana, phytochrome is the main light signal receptor, which is an important component of light signal input to the circadian clock. Under different light conditions, Lhcb and LHY showed obvious circadian rhythm expression pattern. LHY is considered to be a transcription factor regulating the Lhcb gene, acting in or near the vibrator center of A. thaliana [19].

The light-harvesting chlorophyll a/b-binding proteins of photosystem II (LHCIIb, formerly CAB2) were regulated by photoreceptors at the transcriptional level. The Lhcb gene was one of the fastest light-responsive genes in the model system. In terms of rapid response time and sensitivity to light, both provide the most reliable indicators of the transcriptional capacity of plant systems [20]. Kellmann et al. used potatoes as test materials and found that the expression of Lhcb gene increased significantly at around noon, but decreased to an almost undetectable level at midnight [21]. In A. thaliana plants growing under various photoperiodic conditions, Lhcb gene expression levels declined from peak levels before dusk and increased from trough levels before dawn [22]. Circadian rhythms provided a higher competitive advantage for both plant growth and photosynthesis [23]. Stomatal opening and closing, which were mainly affected by light, was an important gateway for plants to exchange gas with the outside world. Stomatal opening was also another kind of circadian rhythm regulation to observe cellular level processes. Somers et al. found that the stomatal conductance of A. thaliana was higher during the day than at night [24]. Li et al. discovered and revealed the evolution and phylogeny of the Lhcb gene in Rosaceae and highlighted the key role of Lhcb in the pear cryogenic response [25]. At present, the molecular mechanism and action mechanism of Lhcb gene family in tea plant are still unclear.

Here, the members of CsLhcb gene family were identified based on genomic data of tea plant, and then, chromosome localization, evolutionary tree and conserved domain were analyzed. The transcriptome data of tea plants were used to analyze the gene expression profiles in different tissues and abiotic stress treatments. In order to study the change of circadian rhythm of ‘Baiyeyihao’ at intervals of 4 h within two photoperiod (48 h), we started lighting at 9:00 (the initial time was recorded as 0 h), took the first sample, sustained light for 12 h, and then darkness for 12 h, where time is the variable. Fluorescence quantitative PCR was used to detect the circadian rhythms response of CsLhcb gene family in ‘Baiyeyihao’ during the two photoperiod periods (48 h). At the same time, the photosynthetic parameters and stomatal opening of tea leaves at different time points were also detected and analyzed. This study provided reference for further research on the circadian rhythm mechanism and function of CsLhcb gene family in tea plant.

Results

Systematic evolution and gene structure analysis of CsLhcb gene family in tea plant

According to the reported nucleotide sequences of Lhcb genes in A. thaliana and rice, a total of 16 CsLhcb family genes were identified and obtained. The phylogenetic tree analysis of LHCB protein sequences of tea plant, A. thaliana and rice showed that CsLHCB proteins could be divided into 7 subgroups with homologous genes of A. thaliana and rice. They were CsLHCB1, CsLHCB2, CsLHCB3, CsLHCB4, CsLHCB5, CsLHCB6 and CsLHCB7, respectively. Each subpopulation contained 1 ∼ 7 CsLHCBs. LHCB1, LHCB2 and LHCB3 were the main body LHCII (or LHCIIb), accounting for 11/16 (Fig. 1).

Fig. 1
figure 1

Phylogenetic analysis of CsLHCBs in C. sinensis

Full size image

Analysis of gene structure and protein conserved motifs of tea plant

MEME was used to predict and analyze the conserved motifs of CsLHCB protein in tea plant. A total of 10 conserved motifs were identified (Fig. 2). Motif 1, Motif 5 and Motif 7 appeared in CsLHCB family members in tea plant, indicating that these motifs were relatively conserved in the evolutionary process. CsLHCB1.1 ∼ CsLHCB1.7 had the same conservative motif, and CsLHCB4.1 and CsLHCB4.2 also had the same conservative motif. Motif 3 and Motif 6 were only found in three family members of LHCII b, suggesting that LHCII b was composed of similar conserved domains and might play a key role in evolution. In order to further understand the function of CsLhcb family genes of tea plant, TBtools was used to draw the gene structure map of CsLhcb for analysis (Fig. 3). The results showed that some regions of CsLhcb2, CsLhcb3.1, CsLhcb4.1, CsLhcb4.2, CsLhcb5, CsLhcb6 and CsLhcb7 could not translate proteins. The CsLhcb gene in the same subfamily was composed of similar gene structure and might be derived from the same gene.

Fig. 2
figure 2

Conserved motif analysis of CsLHCBs in C. sinensis heights of residues within a stack indicate the relative frequency of each residue at that position

Full size image
Fig. 3
figure 3

Structure and Conservative motifs of CsLhcb family genes of C. sinensis A: Conserved motifs of CsLHCB protein, Motif 1 to 10 represented different conserved motifs, represented by different colors B: Intron and exon structure diagram of CsLhcb genes, UTR represents non-coding region, CDS represents exon

Full size image

Chromosome mapping of CsLhcb family genes in tea plant

According to the chromosomal localization analysis of Shuchazao database [26], the results showed that 16 CsLhcb family genes were distributed on 8 chromosomes of tea plant, which were located on chromosomes 1, 3, 4, 5, 7, 9, 10 and 12, respectively. Three homologous gene clusters of CsLhcb gene were analyzed, namely CsLhcb1.1 and CsLhcb1.2, which were located on chromosome 5; CsLhcb1.3, CsLhcb1.4, CsLhcb1.5, CsLhcb1.6 and CsLhcb1.7; CsLhcb3.2 and CsLhcb3.3 were located on chromosome 9 (Fig. 4).

Fig. 4
figure 4

Chromosomal locations of CsLhcb family genes in C. sinensis

Full size image

Analysis of cis-acting elements of CsLhcb family genes in tea plant

The prediction analysis of cis-acting elements in the promoter region of CsLhcb genes in tea plant showed that Light Response Elements were all present in CsLhcb genes (Table 1). The results indicated that all members of CsLhcb family genes may be involved in the light reaction process. The circadian clock response elements were distributed in CsLhcb1.1, CsLhcb1.2, CsLhcb3.2, CsLhcb3.3, CsLhcb6 and CsLhcb7, indicating that these 6 genes might be involved in the photoperiod of tea plant. At the same time, CsLhcb family genes was also may be involved in abiotic stress response and hormone response related cis-acting elements.

Table 1 Primers for RT-qPCR of CsLhcbs genes
Full size table

Analysis of CsLhcb family genes expression pattern in tea plant

In order to further understand the expression profiles of CsLhcb family genes in tea plant, TBtools software was used to make heat maps of the expression levels based on the transcriptome data (Fig. 5). The results showed that the expression levels of CsLhcb1.7, CsLhcb2 and CsLhcb5 were high in all tissues of tea plant. The expression levels of CsLhcb3.2 and CsLhcb3.3 were low in all tissues. In roots and flowers, the expression levels of CsLhcb gene family in tea plant was higher than that in other tissues, especially CsLhcb2 gene. The expression levels of different genes in different tissues of tea plant were different, indicating that CsLhcb gene maybe involved in the growth process of different tissues of tea plant.

Fig. 5
figure 5

Expression profiles of CsLhcb family genes in different tissues of C. sinensis

Full size image

The CsLhcb genes profiles under abiotic stress treatments were also analyzed and heat maps were made (Fig. 6). Under cold stress, the expressions levels of CsLhcb1.4, CsLhcb1.6 and CsLhcb1.7 were decreased, while the expressions levels of the other 13 CsLhcb genes were increased. The expression levels of CsLhcb family genes decreased with the increase of time under drought stress and salt stress. The gene expression levels of CsLhcb genes were upregulated after 12 h methyl jasmonate treatment, and then, the levels decreased gradually with the increase of time.

Fig. 6
figure 6

CsLhcb family genes expression profiles under different stresses in C. sinensis A. Cold treatment; B. Drought treatment; C. Methyl jasmonate treatment; D. Salt treatment

Full size image

Analysis of photosynthetic parameters of circadian rhythm during two photoperiods in tea plants

Net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO2 concentration (Ci) and transpiration rate (Tr) were important parameters reflecting the photosynthesis of plant leaves. The circadian rhythm photosynthetic parameters of tea leaves were detected Interval of 4 h in two photoperiod periods (48 h) time periods (Fig. 7). The net photosynthetic rate (Pn) reached the peak at 4 h and 28 h, reaching the highest of 4.27 µmol·m− 2·s− 1, and then gradually decreased and reached the low point at night. The variation trends of stomatal conductance (Gs) and transpiration rate (Tr) were similar, and were significantly higher in daytime than at night. Intercellular CO2 concentration (Ci) decreased gradually from 0 h to 4 h, and then increased slowly, reaching the highest values at 20 h and 32 h, which were 423.96 mmol·mol− 1 and 449.35 mmol·mol− 1, respectively. The photosynthetic parameters of tea plant had little difference between the two photoperiods, which was in accordance with the rule of circadian clock.

Fig. 7
figure 7

Analysis of photosynthetic parameters during the two photoperiod periods in C. sinensis

Full size image

Analysis on the circadian rhythm of stomatal opening in tea leaves

As shown in Fig. 8, stomatal openings of tea leaves were different at different time points. From 0 h to 4 h, the stomata opened slowly, and the opening gradually increased, 1.24 times of the initial value; At the 28 h, or the 4 h of the second photoperiod periods, the stomatal conductance of tea plant reached the peak of 61.95 µm2. Then the tea plant underwent a short ‘lunch break’ phenomenon, and the stomata slightly contracted compared with the previous stage. Stomatal conductance decreased gradually at night, and reached its lowest level of 33.69 µm2 at 20 h (44 h, second photoperiod periods) the next day (Table 2).

Table 2 Cis-acting element analysis of CsLhcb family genes in C. sinensis
Full size table
Fig. 8
figure 8

Analysis on the circadian rhythm of stomatal aperture in tea leaves

Full size image

Changes in circadian rhythm of CsLhcb family genes expression in tea plant

The expression levels of CsLhcb genes increased first and then decreased during the two photoperiod periods, and were highly expressed during the daytime, especially at 1 pm and 5 pm during the two periods (0–24 h and 24–48 h), with the highest value reaching 12.05, which was CsLhcb1.3 at 28 h. In the first photoperiod, some of the genes reached their maximum value after 8 h of continuous light, and only CsLhcb1.2, CsLhcb1.7, CsLhcb2 and CsLhcb6 reached their maximum value at 4 h. At night (1 am, 5 am), the expression levels were lower than that in day. The expression of some genes was trace expressed (Fig. 9). The trends of CsLhcb genes expression were consistent with circadian rhythm in tea plant.

Fig. 9
figure 9

Circadian rhythm variation of CsLhcb family genes expression profiles in C. sinensis

Full size image

Discussion

In nature, the growth and development of plants are inseparable from light, light too strong or weak will have more or less influence on it. In the process of adaptation to the light environment, circadian clock genes play important roles in the adaptation of plants to the external light environment [4]. In previous studies, clock genes, such as CCA1, LHY and TOC1, have been reported in Arabidopsis, tobacco and Phaseolus vulgaris [27, 28], but there are few reports on circadian clock gene in tea plant [29, 30].

In this study, the CsLhcb family genes involved in circadian rhythm of tea plant was identified and analyzed in detail. The results showed that a total of 16 CsLhcb family genes were identified, while the number of family genes in rice and A. thaliana were 9 and 15, respectively. This suggests that members of the CsLhcb family have been Increased during the evolutionary process [31, 32]. Sixteen CsLhcb genes were distributed on 8 chromosomes of tea plant, which were located on chromosomes 1, 3, 4, 5, 7, 9, 10 and 12, respectively. Three homologous gene clusters were formed on the chromosomes of each CsLhcb member, indicating that there was a certain evolutionary relationship between the members. As an important functional gene in the optical system, Lhcb gene plays an important role in both light capture and transmission [33]. Through the prediction analysis of cis-acting elements in the promoter region of CsLhcb gene in tea plant, the results showed that light response elements were all present in CsLhcb gene, indicating that all members of CsLhcb family genes were involved in the light reaction process. There were also six genes involved in the photoperiod phase of the tea plant. This result was also consistent with effects of light and temperature on the expression of the Lhcb2 gene in pea [34]. In addition to the widespread presence of Lhcb gene in light response, almost all genes also have anaerobically induced cis-acting elements. Deng et al. transferred the LeLhcb2 gene into tobacco and overexpressed it, and found that the overexpression of LeLhcb2 played a key role in reducing PSII photooxidation and enhancing the tolerance of transgenic tobacco to low temperature stress. These findings further confirm the role of this gene family in adaptation to environmental stress [35].

In higher plants, the content of chlorophyll in green plants is closely related to plant photosynthesis. The decrease of chlorophyll content will lead to the decrease of the photosynthetic rate, and even affect the yield of crops in severe cases [36]. The CsLhcb gene family plays a key role in chloroplasts [37]. Tea leaves growing under shady conditions contain higher chlorophyll content [38, 39]. Liu et al. found that two central signal integrators (GLK1 and LHCB) respond significantly to shade in ‘Shuchazao’, indicating that light played important roles in regulating chloroplast development in tea leaves, which is similar to A. thaliana [40]. By silencing the AtLHCB1 gene, Pietrzykowska et al. resulted in slower growth of A. thaliana, smaller leaves, and reduced chlorophyll content [41].

Photosynthesis has a direct impact on the growth and development of tea plant. Here, the photosynthetic parameters of ‘Baiyeyihao’ were measured during the two photoperiod periods (48 h). The results showed that the values of Pn, Gs and Tr were higher in the daytime than at night, and the photosynthetic parameters of tea plant had little difference between the two photoperiods. which was in accordance with the rule of circadian rhythm. Meanwhile, the circadian rhythm of stomatal opening in tea leaves was also analyzed, and it was found that stomatal opening in daytime was significantly higher than that at night, and the variation of stomatal opening was also consistent with the expression level of CsLhcb gene family members. The changes of stomatal opening and Gs are similar, and the increase of stomatal opening plays a key role in improving the photosynthetic characteristics of plants [42]. In higher plants, stomatal pore size was one of many processes that regulate circadian rhythms. The opening and closing of stomata were driven by changes in the inflationary pressure of the guard cells. In Arabidopsis, stomata open early in the morning when ambient temperatures were low. Under field conditions, the circadian rhythm has a significant effect on the gas exchange at the leaf-canopy scale [43]. At the same time, several key genes in the circadian control pathway that regulates photoperiodic flowering have also been shown to influence stomatal aperture. Among them, GI (GIGANTEA) and CO (CONSTANS) up-regulated FT (FLOWERING LOCUS T) level leading to stomatal opening, while ELF3 (EARLY FLOWERING3) inhibited FT leading to stomatal closing [44, 45]. Hassidim et al. proved that photoperiodic pathway components CO and FT, which regulate flowering time, also regulate stomatal aperture in a way dependent on day length [46].

The expression level of CsLhcb genes increased first and then decreased during the two photoperiods, with high expression in daytime and low expression at night, suggesting that the CsLhcb genes were related to the circadian clock [47]. Millar et al. found that the expression of the Lhcb gene in Arabidopsis usually oscillates robustly during each daylight and dark cycle, with peaks and troughs observed during the light and dark phases, respectively. Rapid and brief ‘acute responses’ to light can be distinguished from peak clock regulation at dawn by good temporal resolution [22]. Setsuyuki Aoki et al. showed by Northern blotting that Lhcb mRNA levels in Protosemitic cells had a steady daily oscillation during the light-dark period (12:12 LD), and rapidly decreased during continuous darkness (DD) [48]. The CmLhcb1 expression was higher in leaves than in stems, flowers, and roots. Low light and GA3 treatment increased the expression of CmLhcb1. In chrysanthemum, the expression of CmLhcb1 is regulated by circadian rhythm, and the gene expression in daytime is significantly higher than that at night [49].

Conclusions

In this study, members of the CsLhcb family genes of tea plant were identified and analyzed, the classification and evolutionary relationship were also determined. A total of 16 CsLhcbs genes were distributed on 8 chromosomes based on the genome database of tea plants. CsLhcb members formed three homologous genes clusters in the chromosome of tea plant, indicating that there was a certain evolutionary relationship between the members. At the same time, the response of CsLhcb genes to circadian rhythm of tea plant were detected and analyzed, and the results indicated that CsLhcb genes were involved in the circadian clock process of tea plant. It was found that the expression levels of CsLhcb genes in tea plant within 24 h was related to the trend of photosynthetic parameters, and was basically consistent with stomatal opening state. The results provided a potential research direction and basis for further study on the function of CsLhcb gene family and response to circadian rhythm in tea plant.

Methods

Plant materials and growth conditions

The cutting seedlings of two-year-old ‘Baiyeyihao’ were cultivated in State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization (32° 04′ N, 118° 85′ E, Nanjing, China). The ‘Baiyeyihao’ were provided by the Tea Science Research Institute of Horticulture College, Nanjing Agricultural University. As an albino variant tea variety, ‘Baiyeyihao’ was often used in genetic breeding research. Healthy tea seedlings were selected and placed in the artificial climate chamber (RXZ-380, Jiangnan, Ningbo, China) for pre-culture for 2 days (temperature 25 Â°C, photocycle 12 h /12 h, light intensity 320 µmol·m− 2 s− 1, humidity 70–80%). The sampling was started at 9:00, and healthy tea seedlings were selected every 4 h within 48 h, and one bud and two leaves were picked, wrapped in tin foil and quickly frozen in liquid nitrogen for subsequent quantitative experiments. The second leaf at the top of the tea seedling was picked at each time point for the determination of stomata later. The freshly prepared 1 mmol· L− 1 methyl jasmonate solution was sprayed on the leaves of different treated plants for hormone treatment, and the leaves were collected after treatment (0, 12, 24, 48 h). The tea plants were watered with 20% sodium chloride solution and 20% PEG-6000 solution respectively (500 mL solution), and the leaves were collected after the two treatments (0, 24, 48, 72 h). Leaves were treated at 4 ℃ (0, 12, 24, 48 h) in a light incubator. At the same time, 5 plants with the same growth were randomly selected for the determination of photosynthetic parameters, and each plant was repeated for 3 times.

Screening and identification of Lhcb gene family in tea plant

The TPIA database (http://tpia.teaplant.org/) was used to download tea protein group and the genome data. TAIR database (www.arabidopsis.org/index.jsp) was used to download Arabidopsis AtLHCB amino acid sequence. Then, the identified AtLHCB sequences were submitted to the Pfam database (http://pfam.sanger.ac.uk) and the resulting LHCB domain was represented by the Pfam entry number PF00504.24. The specific conserved domain of Lhcb gene was used for BLASTP alignment and the threshold was set as (E-value ≤ 10− 5) to obtain the amino acid sequence of CsLHCB in tea plant. CDD with NCBI database (https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi) domain analysis verify CsLHCB protein structure, eliminate does not include the Chloroa-b-bind domain of protein structure.

Construction of CsLhcb gene family phylogenetic tree

According to ClustalW, the LHCB protein sequences of A. thaliana, rice (O. sativa) and tea plant (C. sinensis) were submitted to MEGA7.0 software (version: 7.0.26) for sequence alignment, and then the evolutionary tree model was constructed using the software. The sequences of the OsLHCB family were downloaded from a database published by the Joint Genomics Institute. The specific method was neighbor joining analysis, the Boostrap parameter was set to 1000, and the remaining parameters were the default of the system to construct the complete phylogenetic tree [50]. Finally, iTOL online software (iTOL: Interactive Tree of Life (embl.de)) beautifies the evolutionary tree.

Analysis of CsLhcb gene structure and protein conserved motifs of tea plant

The CsLhcb genomic DNA sequence and cDNA sequence of tea plant was submitted to the online software TBtools (version: 1.045) to draw the gene structure map. MEME (http://memesuite.org/) was used for conservative domain analysis, and the number of motifs was set to 10, and the width range was set to 6-50AA. The conserved motifs of LCHB protein were mapped using TBtools [51].

Analysis of cis-acting elements of CsLhcb family genes in tea plant

The upstream 2000 bp sequence of CsLhcb gene start codon was obtained by TBtools software according to tea plant genome data. Then use the plant CARE software (https://bioinformatics.psb.ugent.be/webtools/plantcare/html/) to forecast the original cis elements CsLhcb gene family role, Finally, use Excel 2010 to make tables and analyze relevant data.

Analysis of tissue pattern expression profiles of CsLhcb family genes in tea plant

The expression level of CsLhcb gene in different tissues of tea plant and the expression level of CsLhcb gene in tea plant under abiotic stress were downloaded from TPIA database (http://tpia.teaplant.org/). TBtools was used to map the expression of Lhcb family genes under different tissue and abiotic stress.

RNA extraction and cDNA synthesis

The extraction of total RNA from tea plant samples was completed using the RNA Isolation Kit (Huayueyang, Beijing, China). The concentration of RNA samples was determined by micro ultraviolet detector Nanodrop ND-1000. The RNA quality was detected by 1.2% agarose gel electrophoresis. Total RNA extracted from tea leaves was reversely transcribed into cDNA using reverse transcription kit (TaKaRa, Dalian, China). The Primers for reverse transcription were Oligo (dT) Primer. The steps were 1 µL Oligo (dT) and 1 µL RNA were added, and the rest was filled with RNase-free water for a total of 12 µL in a water bath at 65℃ for 5 min. Then reverse transcription reagent was added into the reaction tube of the first step. The amplification program was set at Oligo (dT): 42 ℃ for 60 min, reverse transcription: 70 ℃ for 5 min, termination: 4 ℃. Store at -20 ℃ for later use. Three biological replicates were performed for each sample.

Detection of leaf photosynthetic parameters

The leaf photosynthetic parameters were determined by LI-6400XT portable photosynthetic apparatus (LI-COR, Lincoln, Nebraska, USA). Net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO2 concentration (Ci) and transpiration rate (Tr) of leaves were measured. The air velocity was 500 µmol·s− 1, light intensity was 600 µmol·m− 2 s− 1, temperature was (20 ± 1) ℃, relative humidity was 70 − 75%, and CO2 concentration was 400 µmol·mol− 1.

Leaf stomatal section detection

While the light and parameters were measured, the second leaf on the top of the tea seedling was picked, the dust on the leaf surface was wiped off, and the transparent nail polish was evenly applied on the back. The leaf was dried for about 5 min, and then glued with transparent tape on the slide, samples were made and stored. A total of 3 biological replicates were performed. The preserved samples were observed with optical microscope Olympus BX-53 (Olympus, Japan) and measured their length and width. Finally, the stomatal opening of leaves was calculated. Stomatal opening (c)=Ï€ab, where a represents 1/2 pore length and b represents 1/2 pore width [52].

RT-qPCR analysis

We conducted a comprehensive analysis on the circadian rhythm changes of all 16 Lhcb family genes expression profiles, and detected the expression level every 4 h in tea plants during two photoperiods (48 h). RT-qPCR primers were designed using Primer Premier6.0 software. Real-time fluorescent quantitative PCR was based on the SYBR Premix Ex Taq Kit specification (TaKaRa, Dalian, China) and on the ABI7500 (Applied Biosystems, Foster city, USA). Tea plant GAPDH gene was selected as the internal reference gene, and the amplification primers were CsGAPDH-F and CsGAPDH-R [53]. The systems used for amplification were 20 µL: 10 µL SYBR Green I mix, 0.4 µL positive and negative fluorescent quantitative primers, 2.0 µL cDNA, 7.2 µL ddH2O. The amplification program was set at 95 ℃ for 5 min. Denatured at 95 ℃ for 10 s, annealed at 54 ℃ for 30 s, extended at 65 ℃ for 15 s, a total of 40 cycles. A total of three biological replicates were performed, and 2−ΔΔCt was used to calculate the relative gene expression levels. The flowchart of the experimental method in this study was shown in Fig. 10. Primers for RT-qPCR of CsLhcbs genes and internal reference gene were listed in Table 3.

Table 3 Stomata aperture of tea leaves during the two photoperiod periods
Full size table
Fig. 10
figure 10

Flowchart of experimental method

Full size image

Data processing and analysis

Microsoft Excel 2019 software was used for data sorting, the significance of differences was analyzed using IBM SPSS Statistics 25.0 (version: 25.0), Duncan’s was used for multiple comparisons (P < 0.05), and Origin 8.0 software was used to complete the graph production.

Data availability

The TPIA database (http://tpia.teaplant.org/) was used to download tea protein group and the genome data. TAIR database (www.arabidopsis.org/index.jsp) was used to download Arabidopsis AtLHCB amino acid sequence.

Abbreviations

Ci:

Intercellular CO2 concentration

Gs:

Stomatal conductance

LD:

Light-dark period

Lhcb:

light-harvesting chlorophyll a/b-binding proteins

MeJAS:

Methyl jasmonate

Mw:

Molecular weight

pI:

Isoelectric point

Pn:

Net photosynthetic rate

RT-qPCR:

Real-time quantitative PCR

Tr:

Transpiration rate

References

  1. Mori T, Johnson CH. Circadian programming in cyanobacteria. Semin Cell Dev Biol. 2001;12(4):271–8.

    Article  CAS  PubMed  Google Scholar 

  2. McClung CR. Plant circadian rhythms. Plant Cell. 2006;18(4):792–803.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Christensen S, Silverthorne J. Origins of phytochrome-modulated lhcb mRNA expression in seed plants. Plant Physiol. 2001;126(4):1609–18.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Greenham K, McClung CR. Integrating circadian dynamics with physiological processes in plants [published correction appears in nat Rev Genet. 2015;16(11):681]. Nat Rev Genet. 2015;16(10):598–610.

    Article  CAS  PubMed  Google Scholar 

  5. Creux N, Harmer S. Circadian rhythms in plants. Cold Spring Harb Perspect Biol. 2019;11(9):a034611.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Huang T, Liu H, Tao JP, Zhang JQ, Zhao TM, Hou XL, Xiong AS, You X. Low light intensity elongates period and defers peak time of photosynthesis: a computational approach to circadian-clock-controlled photosynthesis in tomato. Hortic Res. 2023;10(6):uhad077.

    Article  PubMed  PubMed Central  Google Scholar 

  7. Cohen SE, Golden SS. Circadian rhythms in Cyanobacteria. Microbiol Mol Biol Rev. 2015;79(4):373–85.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Zheng X, Zhang K, Zhao Y, Fent K. Environmental chemicals affect circadian rhythms: an underexplored effect influencing health and fitness in animals and humans. Environ Int. 2021;149:106159.

    Article  CAS  PubMed  Google Scholar 

  9. Li JW, Zhou P, Hu ZH, Teng RM, Wang YX, Li T, Xiong AS, Li XH, Chen X, Zhuang J. CsPAT1, a GRAS transcription factor, promotes lignin accumulation by antagonistic interacting with CsWRKY13 in tea plants. Plant J. 2024; 6.

  10. Liu ZW, Li H, Liu JX, Wang Y, Zhuang J. Integrative transcriptome, proteome, and microRNA analysis reveals the effects of nitrogen sufficiency and deficiency conditions on theanine metabolism in the tea plant (Camellia sinensis). Hortic Res. 2020;7:65.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Teng RM, Wang YX, Ling SJ, Chen Y, Yang YZ, Yang N, Li JW, Zhuang J. CsWRKY13, a novel WRKY transcription factor of Camellia sinensis, involved in lignin biosynthesis and accumulation. Beverage Plant Res. 2021;1:12.

    Article  Google Scholar 

  12. Zhao XY, Yu XH, Liu XM, Lin CT. Light regulation of gibberellins metabolism in seedling development. J Integr Plant Biol. 2007;49:21–7.

    Article  CAS  Google Scholar 

  13. Du K, Wu W, Liao T, Yang J, Kang X. Transcriptome analysis uncovering regulatory networks and hub genes of Populus photosynthesis and chlorophyll content. Genomics. 2022;114(4):110385.

    Article  CAS  PubMed  Google Scholar 

  14. Inoue K, Araki T, Endo M. Circadian clock during plant development. J Plant Res. 2018;131(1):59–66.

    Article  PubMed  Google Scholar 

  15. Wang ZY, Kenigsbuch D, Sun L, Harel E, Ong MS, Tobin EM. A myb-related transcription factor is involved in the phytochrome regulation of an Arabidopsis Lhcb gene. Plant Cell. 1997;9(4):491–507.

    CAS  PubMed  PubMed Central  Google Scholar 

  16. Dodd AN, Kusakina J, Hall A, Gould PD, Hanaoka M. The circadian regulation of photosynthesis. Photosynth Res. 2014;119(1–2):181–90.

    Article  CAS  PubMed  Google Scholar 

  17. Schaffer R, Landgraf J, Accerbi M, Simon V, Larson M, Wisman E. Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell. 2021;13(1):113–23.

    Article  Google Scholar 

  18. Harmer SL, Hogenesch JB, Straume M, Chang HS, Han B, Zhu T, Wang X, Kreps JA, Kay SA. Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science. 2000;290(5499):2110–3.

    Article  CAS  PubMed  Google Scholar 

  19. Kaldis AD, Kousidis P, Kesanopoulos K, Prombona A. Light and circadian regulation in the expression of LHY and Lhcb genes in Phaseolus vulgaris. Plant Molecular Biology. 2003; 52(5): 981–997.

  20. Thompson WF, White MJ. Physiological and molecular studies of light-regulated nuclear genes in higher plants. Annual Rev Plant Biology. 1991;42:423–66.

    Article  CAS  Google Scholar 

  21. Kellmann JW, Merforth N, Wiese M, Pichersky E, Piechulla B. Concerted circadian oscillations in transcript levels of nineteen Lha/b (cab) genes in Lycopersicon esculentum (tomato). Mol Gen Genet. 1993;237(3):439–48.

    Article  CAS  PubMed  Google Scholar 

  22. Millar AJ, Kay SA. Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc Natl Acad Sci USA. 1996;93(26):15491–6.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  23. Dodd AN, Salathia N, Hall A, Kévei E, Tóth R, Nagy F, Hibberd JM, Millar AJ, Webb AA. Plant circadian clocks increase photosynthesis, growth, survival, and competitive advantage. Science. 2005;309(5734):630–3.

    Article  CAS  PubMed  Google Scholar 

  24. Somers DE, Webb AA, Pearson M, Kay SA. The short-period mutant, toc1-1, alters circadian clock regulation of multiple outputs throughout development in Arabidopsis thaliana. Development. 1998;125(3):485–94.

    Article  CAS  PubMed  Google Scholar 

  25. Li X, Jiang Z, Zhang C, Cai K, Wang H, Pan W, Sun X, Gao Y, Xu K. Comparative genomics analysis provide insights into evolution and stress responses of lhcb genes in Rosaceae fruit crops. BMC Plant Biolgy. 2023;23(1):484.

    Article  CAS  Google Scholar 

  26. Chen JD, Zheng C, Ma JQ, Jiang CK, Ercisli S, Yao MZ, Chen L. The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant. Hortic Res. 2020;7:63.

    Article  PubMed  PubMed Central  Google Scholar 

  27. Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, Park CM. A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis. Plant Cell. 2012;24(6):2427–42.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Valim HF, McGale E, Yon F, Halitschke R, Fragoso V, Schuman MC, Baldwin IT. The clock gene TOC1 in shoots, not roots, determines fitness of Nicotiana attenuate under Drought. Plant Physiol. 2019;181(1):305–18.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Hu ZH, Zhang N, Qin ZY, Li JW, Yang N, Chen Y, Kong JY, Luo W, Xiong AS, Zhuang J. Differential Response of MYB Transcription Factor Gene Transcripts to Circadian Rhythm in Tea Plants (Camellia sinensis). International journal of molecular sciences. 2024; 25(1): 657.

  30. Singh G, Singh V, Singh V. Systems scale characterization of circadian rhythm pathway in Camellia sinensis. Comput Struct Biotechnol J. 2022;20:598–607.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Jansson S. A guide to the Lhc genes and their relatives in Arabidopsis/IT>. Trends Plant Sci. 1999;4(6):236–40.

    Article  CAS  PubMed  Google Scholar 

  32. Umate P. Genome-wide analysis of the family of light-harvesting chlorophyll a/b-binding proteins in Arabidopsis and rice. Plant Signal Behav. 2010;5(12):1537–42.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Rochaix JD. Regulation and dynamics of the light-harvesting system. Annu Rev Plant Biol. 2014;65:287–309.

    Article  CAS  PubMed  Google Scholar 

  34. Sun QM, Li LB, Yan JS, Ma DZ, Kuang TY. Effects of light and temperature on the expression of the Lhcb2 gene in pea. Acta Bot Sinica. 2000;42(3):258–62.

    CAS  Google Scholar 

  35. Deng YS, Kong FY, Zhou B, Zhang S, Yue MM, Meng QW. Heterology expression of the tomato LeLhcb2 gene confers elevated tolerance to chilling stress in transgenic tobacco. Plant Physiol Biochem. 2014;80:318–27.

    Article  CAS  PubMed  Google Scholar 

  36. Wang PR, Zhang FT, Gao JX, Deng XJ. An overview of Chlorophyll Biosynthesis in higher plants. Acta Bot Boreali-Occidentalia Sinica. 2009;29(3):629–36.

    CAS  Google Scholar 

  37. Waters MT, Langdale JA. The making of a chloroplast. EMBO J. 2009;28(19):2861–73.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  38. Liu GF, Han ZX, Feng L, Gao LP, Gao MJ, Gruber MY, Zhang ZL, Xia T, Wan XC, Wei S. Metabolic flux redirection and transcriptomic reprogramming in the albino tea cultivar ‘Yu-Jin-Xiang’ with an emphasis on Catechin Production. Sci Rep. 2017;7:45062.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  39. Liu LL, Li YY, She G, Zhang XC, Jordan B, Chen Q, Zhao J, Wan XC. Metabolite profiling and transcriptomic analyses reveal an essential role of UVR8-mediated signal transduction pathway in regulating flavonoid biosynthesis in tea plants (Camellia sinensis) in response to shading. BMC Plant Biol. 2018;18(1):233.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  40. Liu LL, Lin N, Liu XY, Yang S, Wang W, Wan XC. From Chloroplast Biogenesis to Chlorophyll Accumulation: The Interplay of Light and Hormones on Gene Expression in Camellia sinensis cv. Shuchazao Leaves. Frontiers in Plant Science. 2020; 11: 256.

  41. Pietrzykowska M, Suorsa M, Semchonok DA, Tikkanen M, Boekema EJ, Aro EM, Jansson S. The light-harvesting chlorophyll a/b binding proteins Lhcb1 and Lhcb2 play complementary roles during state transitions in Arabidopsis. Plant Cell. 2014;26(9):3646–60.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Liu X, Dong XF, Liu ZH, Shi ZH, Jiang Y, Qi MF, Xu T, Li TL. Repression of ARF10 by microRNA160 plays an important role in the mediation of leaf water loss. Plant Mol Biol. 2016;92(3):313–36.

    Article  CAS  PubMed  Google Scholar 

  43. Resco de Dios V, Gessler A, Ferrio JP, Alday JG, Bahn M, Del Castillo J, Devidal S, García-Muñoz S, Kayler Z, Landais D, Martín-Gómez P, Milcu A, Piel C, Pirhofer-Walzl K, Ravel O, Salekin S, Tissue DT, Tjoelker MG, Voltas J, Roy J. Circadian rhythms have significant effects on leaf-to-canopy scale gas exchange under field conditions. Gigascience. 2016;5(1):43.

    Article  PubMed  PubMed Central  Google Scholar 

  44. Kinoshita T, Ono N, Hayashi Y, Morimoto S, Nakamura S, Soda M, Kato Y, Ohnishi M, Nakano T, Inoue S, Shimazaki K. FLOWERING LOCUS T regulates stomatal opening. Curr Biol. 2011;21(14):1232–8.

    Article  CAS  PubMed  Google Scholar 

  45. Ando E, Ohnishi M, Wang Y, Matsushita T, Watanabe A, Hayashi Y, Fujii M, Ma JF, Inoue S, Kinoshita T. TWIN SISTER OF FT, GIGANTEA, and CONSTANS have a positive but indirect effect on blue light-induced stomatal opening in Arabidopsis. Plant Physiol. 2013;162(3):1529–38.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  46. Hassidim M, Dakhiya Y, Turjeman A, Hussien D, Shor E, Anidjar A, Goldberg K, Green RM. CIRCADIAN CLOCK ASSOCIATED1 (CCA1) and the Circadian Control of Stomatal aperture. Plant Physiol. 2017;175(4):1864–77.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  47. Kay SA. Shedding light on clock-controlled cab gene transcription in higher plants. Semin Cell Biol. 1993;4(2):81–6.

    Article  CAS  PubMed  Google Scholar 

  48. Aoki S, Kato S, Ichikawa K, Shimizu M. Circadian expression of the PpLhcb2 gene encoding a major light-harvesting chlorophyll a/b-binding protein in the moss Physcomitrella patens. Plant Cell Physiol. 2004;45(1):68–76.

    Article  CAS  PubMed  Google Scholar 

  49. Hang S, Liu RX, Zhang ZH, Chen SM, Jiang JF, Fang WM, Liao Y, Chen FD. Cloning of chlorophyll a/b binding protein CmLhcb1 and promoter from Chrysanthemum morifolium and expression analysis. Acta Horticulturae Sinica. 2013;40:1119–28.

    Google Scholar 

  50. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28(10):2731–9.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  51. Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009;37:202–8.

    Article  Google Scholar 

  52. Xu P, Li J, Lu HY, Li YJ. Effect of salicylic acid on stomata aperture of epidermis in Ammodendron argenteum cotyled under drought stress. J Plant Physiol. 2014;50:510–8.

    Google Scholar 

  53. Wu ZJ, Tian C, Jiang Q, Li XH, Zhuang J. Selection of suitable reference genes for qRT-PCR normalization during leaf development and hormonal stimuli in tea plant (Camellia sinensis). Sci Rep. 2016;6:19748.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

Not applicable.

Funding

The research was supported by the National Natural Science Foundation of China (31870681), Provincial Policy Guidance Program North Jiangsu Science and Technology Special Project (SZ-LYG202126), Collection and Creation of Horticultural Crop Germplasm Resources of Jiangsu (JSFEM-202212), Priority Academic Program Development of Jiangsu Higher Education Institutions Project (PAPD).

Author information

Authors and Affiliations

  1. Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University, Nanjing, 210095, China

    Zhi-Hang Hu, Zhi-Yuan Qin, Jing-Wen Li, Ni Yang, Yi Chen, Jie-Yu Kong, Wei Luo, Xuan Chen, Xing-Hui Li & Jing Zhuang

  2. State Key Laboratory of Crop Genetics & Germplasm Enhancement and Utilization, College of Horticulture, Nanjing Agricultural University, 1 Weigang, Nanjing, 210095, China

    Nan Zhang, Jian-Ping Tao & Ai-Sheng Xiong

Authors
  1. Zhi-Hang Hu
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Nan Zhang
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Zhi-Yuan Qin
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Jing-Wen Li
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Jian-Ping Tao
    View author publications

    You can also search for this author in PubMed Google Scholar

  6. Ni Yang
    View author publications

    You can also search for this author in PubMed Google Scholar

  7. Yi Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

  8. Jie-Yu Kong
    View author publications

    You can also search for this author in PubMed Google Scholar

  9. Wei Luo
    View author publications

    You can also search for this author in PubMed Google Scholar

  10. Xuan Chen
    View author publications

    You can also search for this author in PubMed Google Scholar

  11. Xing-Hui Li
    View author publications

    You can also search for this author in PubMed Google Scholar

  12. Ai-Sheng Xiong
    View author publications

    You can also search for this author in PubMed Google Scholar

  13. Jing Zhuang
    View author publications

    You can also search for this author in PubMed Google Scholar

Contributions

JZ, ZHH and ASX conceived and designed the experiments. ZHH, NZ, ZYQ, JWL, JPT, NY, YC, JYK, and WL performed the experiments. ZHH analyzed the data. JZ contributed reagents/materials/analysis tools. ZHH wrote the paper. JZ, XC, XHL revised the paper. All authors read and approved the final manuscript.

Corresponding authors

Correspondence to Ai-Sheng Xiong or Jing Zhuang.

Ethics declarations

Ethics approval and consent to participate

The tea cultivar (Camellia sinensis cv. ‘Baiyeyihao’) used in this study were provided by the Tea Science Research Institute, College of Horticulture, Nanjing Agricultural University (Nanjing, China) with the required permits. Experimental research and field studies on plants, including the collection of plant material, complied with relevant institutional, national, and international guidelines and legislation.

Consent for publication

Not applicable.

Competing interests

The authors declare that they have no competing interest.

Additional information

Publisher’s Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary Material 1

Rights and permissions

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Hu, ZH., Zhang, N., Qin, ZY. et al. Circadian rhythm response and its effect on photosynthetic characteristics of the Lhcb family genes in tea plant. BMC Plant Biol 24, 333 (2024). https://doi.org/10.1186/s12870-024-04958-0

Download citation

  • Received:

  • Accepted:

  • Published:

  • DOI: https://doi.org/10.1186/s12870-024-04958-0

Keywords

BMC Plant Biology

ISSN: 1471-2229

Contact us