Genome-wide association study for resistance in bread wheat (Triticum aestivum L.) to stripe rust (Puccinia striiformis f. sp. tritici) races in Argentina

Table 2 Significant SNPs associated with seedling resistance to stripe rust in the collection of bread wheat

Trait	Chr.^a	SNP	Position^b	Allele ^c	P-value	MAF ^d	FDR-Adjusted P-values^e	R^2f
IT (Yr19-71)	1B	Tdurum_contig11004_688	62,487,859	C/T	5.02E⁻¹⁵	0.06	1.27 × 10^–10	32.62
IT (Yr20-161)	1B	Tdurum_contig44861_581	28,019,260	C/A	1.59E_-07	0.04	1.01 × 10^–03	16.48
	2A	BobWhite_c4517_120	755,790,846	A/G	7.64E⁻⁰⁷	0.35	3.23 × 10^–03	6.59
	3A	Excalibur_rep_c103091_266	79,761,951	C/T	2.14E⁻⁰⁸	0.32	3.29 × 10^–04	8.34
	5B	wsnp_Ex_c33932_42333941	12,898,000	A/G	6.79E⁻⁰⁷	0.33	3.23 × 10^–03	1.99

^a Chr. Chromosome
^b Physical position of SNP (single-nucleotide polymorphism) markers in base pairs as per IWGSC Ref Seq 2.1
^c Favorable allele is underlined
^d MAF Minor allele frequency
^e FDR False discovery rate adjusted P-values
^f Percentage of phenotypic variation explained by the marker-trait association

ISSN: 1471-2229