Systematic identification of miRNA-regulatory networks unveils their potential roles in sugarcane response to Sorghum mosaic virus infection

Table 1 KEGG enrichment analysis of the predicted target genes corresponding to differentially expressed miRNAs in susceptible ROC22 and resistant FN39 infected by Sorghum mosaic virus

Variety	Pathway	Pathway ID	Enrichment factor	Q-value	Predicted target gene ID	miRNA ID
ROC22	mRNA surveillance pathway	ko03015	19.00	0.3158	CL9Contig5	unconservative_Sugarcane_Unigene_BMK.66937_28432
	Valine, leucine and isoleucine degradation	ko00280	19.00	0.3158	CL21518Contig1	conservative_CL21518Contig1_10252
	Selenocompound metabolism	ko00450	19.00	0.3158	Sugarcane_Unigene_BMK.53035	conservative_Sugarcane_Unigene_BMK.11814_18991; conservative_Sugarcane_Unigene_BMK.23824_20400
	Sulfur metabolism	ko00920	6.33	0.9098
	Purine metabolism	ko00230	2.71	1.0000
	Plant-pathogen interaction	ko04626	6.33	0.9098	gi35101728	conservative_CL26672Contig1_15829
FN39	Aminoacyl-tRNA biosynthesis	ko00970	15.20	0.4605	Sugarcane_Unigene_BMK.73427	unconservative_T3_Unigene_BMK.49787_40875
	Regulation of autophagy	ko04140	15.20	0.4605	CL7998Contig1	unconservative_Sugarcane_Unigene_BMK.24423_20472
	mRNA surveillance pathway	ko03015	15.20	0.4605	CL9Contig5	unconservative_Sugarcane_Unigene_BMK.66937_28432
	Selenocompound metabolism	ko00450	15.20	0.4605	Sugarcane_Unigene_BMK.53035	conservative_Sugarcane_Unigene_BMK.11814_18991; conservative_Sugarcane_Unigene_BMK.23824_20400
	Sulfur metabolism	ko00920	5.07	1.0000
	Purine metabolism	ko00230	2.17	1.0000
	Glycerophospholipid metabolism	ko00564	5.07	1.0000	T3_Unigene_BMK.1340	conservative_T1_Unigene_BMK.40479_34605

KEGG enrichment analysis was referred to the report of Kanehisa et al. [20]. Conservative and unconservative IDs represent known and novel miRNAs, respectively

ISSN: 1471-2229