Table 2 Genes in the sequenced Trapa chloroplast genome

Subunits of ATP synthase

Genes for photosynthesis

atp A, B, E, F, H, I

Other genes

accD, ccsA, cemA, clpP, matK

Subunits of NADH dehydrogenase

Genes for photosynthesis

ndh A, B(2), C, D, E, F, G, H, I, K, J

Subunits of photosystem I

Psa A, B, C, I, J

Subunits of photosystem II

Genes for photosynthesis

psb A, B, C, E, F, G, H, I, J, K, L, M, N, T, Z

Subunits of cytochrome

pet A, B, D, G, L, N

Large subunit of Rubisco

Genes for photosynthesis

rbcL

Large subunit of ribosome

Self-replication

rps 2(2), 3, 4, 7(2), 8, 11, 12(2)^A, 14, 15, 16, 18, 19

DNA dependent RNA polymerase

Self-replication

rpoA, B, C1, C2

Ribosomal RNA genes

Self-replication

rrn 5(2),4.5(2), 16(2), 23(2)

Small subunit of ribosome

Self-replication

rpl2(2), 14, 16, 20, 22, 23(2), 32, 33, 36

Transfer RNA genes

Self-replication

trnA-UGC(2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnH-GUG, trnI-CAU(2), trnI-GAU(2), trnK-UUU, trnL-CAA(2), trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU(2), trnP-UGG, trnQ-UUG, trnR-ACG(2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(2), trnV-UAC, trnW-CCA, trnY-GUA

Conserved open reading frames

Genes of unknown function

ycf1(2), 2(2), 3, 4