Table 4 Genes involved in secondary metabolism

Phenylpropanoid biosynthesis

  Caffeic acid 3-O-methyltransferase

down

trinity_267412, oases_384295

  Coniferyl-aldehyde dehydrogenase

down

trinity_320214, oases_445900, trinity_320212

  Shikimate O-hydroxycinnamoyltransferase; HCT

down

oases_375831; trinity_347573,

oases_375847, trinity_44469, oases_375829

  P-coumaroyl ester 3'-hydroxylase; C3'H

down

oases_4947, oases_4919, oases_4943

  ß-glucosidase

down

oases_241103, oases_241107, oases_278543

  Caffeoyl-CoA O-methyltransferase

up

oases_399468

  Cinnamyl-alcohol dehydrogenase; CAD

up

trinity_96535, oases_222834

  Cinnamoyl-CoA reductase; CCR

up

oases_222835, oases_222840, oases_222837

  Feruloyl-CoA 6-hydroxylase; F6H

up

oases_511410

Flavonoid biosynthesis

  Bifunctional dihydroflavonol 4-reductase/ flavanone 4-reductase

up

trinity_95243

  Chalcone synthase; CHS

up

trinity_18046

  Flavanone 2-hydroxylase

up

oases_557081

  Flavanone 3-hydroxylase

up

oases_327990

  Isoflavone 2'-hydroxylase

up

trinity_142768

  Isoflavone 3'-hydroxylase

up

trinity_142768, oases_517633, oases_531828

  Anthocyanidin synthase

up

oases_532538

  Anthocyanidin 3-O-glucosyltransferase

up

trinity_193322

  Polyphenol oxidase

up

oases_488858, oases_488859

Isoprenoid biosynthesis

  1-deoxy-D-xylulose-5-phosphate synthase; dxs

down

oases_47553, oases_47552, oases_128123,

oases_128124, oases_475380, oases_128110

  Hydroxymethylglutaryl-CoA reductase; HMGR

down

trinity_239528, oases_223526, oases_223530

  Farnesyl diphosphate synthase

down

oases_327788

  Geranylgeranyl diphosphate synthase

down

trinity_12151

  Squalene synthase

down

oases_109614, oases_109610

  Myrcene synthase

down

oases_421237

  Pinene synthase

down

oases_372831