Table 2 Genes involved in phytohormone metabolism and signalling

Auxin

  Indole-3-pyruvate monooxygenase; YUCCA

down

oases_465475

  2-oxoglutarate-dependent dioxygenase DAO

up

oases_546679, oases_546677, trinity_352891

  Indole-3-acetic acid-amido synthetase GH3.6

up

oases_585901; rnaspades_20166

  Auxin efflux carrier component 3; PIN3

down

oases_96998

  Phytochrome-interacting factor 4; PIF4

down

oases_383788, oases_383793

  Auxin influx carrier; AUX1 / LAX

down

trinity_70441, oases_184908

  Auxin response factor; ARF

down

trinity_295296

Gibberellin

  Gibberellin 20 oxidase; GA20ox

down

oases_103383, oases_103382, oases_532982

  Ent-kaurene oxidase; GA3

down

oases_118699, oases_118698

  DELLA protein

up

trinity_376415, trinity_376421

Brassinosteroids

  Brassinosteroid-6-oxidase 1

down

oases_222582, trinity_237646, oases_222575

  CYP90A1

down

oases_115434

Strigolactones

  All-trans/9-cis-β-carotene isomerase; DWARF27

down

oases_375815, oases_375817, oases_375816,

rnaspades_110041, oases_375808

  Strigolactone esterase; DWARF14

up

oases_468066

  Strigolactone esterase; DWARF14

down

oases_448880, oases_448881

Cytokinin

  Adenylate isopentenyltransferase 5; IPT5

up

oases_535017, oases_535016; oases_535015

  Histidine-containing phosphotransfer protein

up

oases_162595, oases_162591

  Type-B ARABIDOPSIS RESPONSE REGULATOR

up

oases_337156

  Type-A ARABIDOPSIS RESPONSE REGULATOR

down

oases_455999

  WUSCHEL-related homeobox 1; WUS

up

oases_589420

Abscisic acid

  Zeaxanthin epoxidase; ZEP

down

oases_145318

  SNF1-related protein kinase 2; SnRK2

down

trinity_216465, oases_147911

  ABA responsive element binding factor; ABF

down

oases_140827

Ethylene

  1-aminocyclopropane-1-carboxylate oxidase

up

oases_571321, oases_522201, rnaspades_28915

  Ethylene-responsive transcription factor ERF2

up

rnaspades_123541

Jasmonic acid

  Jasmonic acid-amino synthetase; JAR1_4_6

up

oases_262217, trinity_253178, oases_262230,

oases_262216, oases_262227

  Jasmonate ZIM domain protein; JAZ

down

rnaspades_58714, oases_151042, trinity_148341

Salicylic acid

  Isochorismate synthase; PHYLLO

up

rnaspades_8947, oases_243078

  Salicylic acid 3-hydroxylase; DMR6

up

oases_327994

  Pathogenesis-related protein 1; PR-1

up

rnaspades_100763, rnaspades_107927