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Table 1 Genes involved in nutrient transport and metabolism of carbohydrates, amino acids and lipids

From: Differential transcription pathways associated with rootstock-induced dwarfing in breadfruit (Artocarpus altilis) scions

Description

Expression pattern

Gene ID

Nutrient transport

  Sucrose/H+ symporter SUT1

down

trinity_40896

  Tonoplast‐localized sucrose transport SUT4-like

down

rnaspades_39330

  Sugar (and other) transporter

down

oases_192581, oases_137976, oases_192586

  Proton-dependent oligopeptide transporter

down

oases_213155, trinity_32858

  Potassium channel AKT1

down

oases_475576, oases_475593, oases_475606,

  

oases_475614, trinity_15808

  Potassium channel AKT2/3

down

oases_380431, oases_475578, oases_475619, oases_475589

  SWEET sugar transporter

down

trinity_59504, trinity_59506; oases_190576; oases_190572

  Choline transporter-like

down

oases_181685, oases_181691, oases_181688, oases_181689

Carbohydrate metabolism

  Granule-bound starch synthase

down

oases_169727, oases_169703, rnaspades_98532

  α-amylase

up

oases_552865, oases_552874, oases_335134

  Starch phosphorylase

up

trinity_296064

Amino acid metabolism

  Methyltetrahydropteroyltriglutamate-

down

oases_261494

  Homocysteine methyltransferase; metE

  

  Threonine ammonia-lyase; ilvA

down

trinity_346450, trinity_346451, rnaspades_61830

  serB; phosphoserine phosphatase

down

oases_329556, oases_261902

  N-acetylglutamate synthase (NAGS)

down

rnaspades_30298

  Serine hydroxymethyltransferase; glyA

down

trinity_26220, oases_123058, oases_123030

  

oases_123034, rnaspades_49844

  6-phosphofructokinase 1; pfkA

down

oases_173227

  Pyruvate kinase

down

oases_329556

  Shikimate kinase; aroK

down

trinity_74402

  3-deoxy-7-phosphoheptulonate synthase

down

trinity_190957, oases_280413, oases_280417,

  (DAHP synthase)

 

trinity_190966, trinity_190974

  3-dehydroquinate dehydratase (DHQase)

down

oases_251725, oases_251713

  Chorismate synthase; aroC

down

oases_255980, rnaspades_8947

  Ornithine carbamoyltransferase

up

oases_175970

  NADP-specific glutamate dehydrogenase

up

oases_549773

  Branched-chain amino acid aminotransferase

up

trinity_70257

  Fumarylacetoacetase

up

oases_73908

Lipid metabolism

  3-oxoacyl- synthase II; fabF

down

oases_404351

  Fatty acyl-ACP thioesterase B; FATB

down

oases_139817

  Acyl- desaturase; FAB2

down

oases_83116

  Acyl-coenzyme A thioesterase

down

oases_238563

  ß -ketoacyl synthase / very-long-chain 3-oxoacyl-CoA reductase

down

trinity_169921

  Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

down

oases_336848, trinity_284802

  Enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase

up

oases_148807, oases_290131