Table 1 Summary of RNA sequencing data in million (M) reads from 12 RNA libraries and comparison with full length transcripts
Libraries | Clean data | Mapped reads (Ratio) | ||||||
|---|---|---|---|---|---|---|---|---|
Pairend Reads (M) | Base Sum (M) | GC (%) | Q30 (%) | Total Reads (M) | Mapped Reads (%) | Uniq mapped Reads (%) | Multi mapped Reads (%) | |
RC1 | 26.92 | 804.55 | 42.93 | 90.68 | 26.92 | 76.02% | 30.23% | 69.77% |
RC2 | 26.57 | 793.00 | 42.69 | 90.77 | 26.57 | 76.75% | 30.79% | 69.21% |
RC3 | 25.31 | 755.13 | 42.79 | 90.35 | 25.31 | 76.09% | 30.89% | 69.11% |
RD1 | 27.76 | 8301.00 | 43.66 | 92.19 | 25.65 | 77.30% | 28.59% | 71.41% |
RD2 | 27.33 | 8154.65 | 43.38 | 92.15 | 27.02 | 75.21% | 31.17% | 68.83% |
RD3 | 26.38 | 7873.64 | 42.69 | 92.42 | 28.01 | 74.63% | 30.23% | 69.77% |
LC1 | 25.65 | 7672.36 | 42.65 | 92.32 | 27.76 | 79.42% | 26.51% | 73.49% |
LC2 | 27.02 | 8079.60 | 42.69 | 92.62 | 27.33 | 79.72% | 26.62% | 73.38% |
LC3 | 28.01 | 8374.75 | 42.77 | 91.78 | 26.38 | 79.45% | 26.01% | 73.99% |
LD1 | 25.13 | 7496.12 | 43.6 | 92.11 | 25.13 | 79.69% | 24.45% | 75.55% |
LD2 | 25.75 | 7686.24 | 43.96 | 91.95 | 25.75 | 78.87% | 23.52% | 76.48% |
LD3 | 26.94 | 8042.36 | 43.05 | 92.11 | 26.94 | 77.65% | 25.62% | 74.38% |
Mean | 26.56 | 6169.45 | 43.07 | 91.79 | 26.56 | 77.57% | 27.89% | 72.11% |