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Table 3 Summary of Major-QTLs (M-QTLs) for plant vigour and canopy conductance related traits using different genetic map. Low density (241 SSR marker-Varshney et al. 2014); high density (1007 SSR + SNP marker- Jaganathan et al. 2015) and ultra-high density (1557 SNP markers- Kale et al. 2015) markers were used for identification of QTLs. The trait on only measured at 2015 indicates (+) and newly identified additional QTLs with high density markers were indicated by (*). Details of traits code were mentioned in Table 1

From: Plant vigour QTLs co-map with an earlier reported QTL hotspot for drought tolerance while water saving QTLs map in other regions of the chickpea genome

Marker used Trait code Linkage groups (LGs) Total QTLs No. of QTLs in the QTL hotspot Consistent QTLs Genetic Size (cM) Logarithm of the odds ratio (LOD) Phenotypic variation explained (PVE, %)
Low density-SSR VIG 4 2 2 + 2.00 7.0-32 13-44
High density-SSR + SNPs VIG 4 2 2 + 0.4-2.7 36-39 47-51
Ultra-high density-SNPs VIG 4 1 1 + 0.14 36.7 53.00
Low density-SSR 3DL 4 5 5 2 1.0-6.0 5.0-12 10-23
High density-SSR + SNPs 3DL 4 5 5 3 0.4-3.6 6.0-13 11-20
Ultra-high density-SNPs 3DL 4&6 4 3 1 0.15-13 2.3-9.8 11-19
Low density-SSR PL 4 3 3 1 5.0-7.0 6.0-6.0 12-13
High density-SSR + SNPs PL 4 3 3 1 1.3-5.6 6.0-9.0 10-14
Ultra-high density-SNPs PL 4 1 1 1 0.05 5.6 11
Low density-SSR SDW 4 5 5 3 3.0-7.0 4.0-10 10-20
High density-SSR + SNPs SDW 4 6* 6 3 0.9-2.8 5.0-11 11-18
Ultra-high density-SNPs SDW 4 1 1 1 0.15 9.3 18
Low density-SSR LAI 4 2 2 2 4.0-7.0 5.0-7.0 10-16
High density-SSR + SNPs LAI 4 1 1 0.8 6.0 10
Ultra-high density-SNPs LAI 4 1 1 1 0.15 5.7 11
Low density-SSR PH 4 6 6 2 2.0-8.0 6.0-23 10-32
High density-SSR + SNPs PH 4 6 6 2 0.8-2.9 8.0-29 14-37
Ultra-high density-SNPs PH 2,4&7 7* 5 3 3.4-0.14-0.10 4.9-21.7 10-39
Low density-SSR PHG 4 5 5 2 3.0-4.0 5.0-13 11-25
High density-SSR + SNPs PHG 4 9* 9 3 1.1-4.6 7.0-17  
Ultra-high density-SNPs PHG 4&7 4 3 1 0.14-0.07 4.8-13.6 10-23
Low density-SSR eT 4 1 1 1 8.0 5.0 11
High density-SSR + SNPs eT 4 1 1 1 0.21 4.0 12
Ultra-high density-SNPs eT
Low density-SSR eTR 4 2 1 7.0-10 6.0-8.0 10-11
High density-SSR + SNPs eTR 3&4 4* 3 2 2.0-5.0 3.0-6.0 11-14
Ultra-high density-SNPs eTR 4 1 1 0.48 5.7 11
Low density-SSR T 4&8 2 1 1 6.0-8.0 5.0 12-14
High density-SSR + SNPs T 5&8 2 2.9-3.5 3.0-6.0 10-14
Ultra-high density-SNPs T
Low density-SSR TR 7 3 1 5.0-13 3.0-5.0 10-17
High density-SSR + SNPs TR
Ultra-high density-SNPs TR 3 1 0.08 5.1 10
Low density-SSR R-3D/PLA 4, 6 &7 10 5 1.0-15.0 6.0-13 10-15
High density-SSR + SNPs R-3D/PLA 1,4, 6&7 13* 1 4 0.3-4.2 7.0-14 10-16
Ultra-high density-SNPs R-3D/PLA