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Table 4 Common motifs present in the 700 bp upstream promoter regions of the Arabidopsis SAMDC genes

From: Polyamines in the life of Arabidopsis: profiling the expression of S-adenosylmethionine decarboxylase (SAMDC) gene family during its life cycle

Motif name Consensus sequence Physiological responses SAMDC gene promoters containing motifs (upstream location)
ABRE-like binding site motif CACGTGTA and TCCACGTG dehydration, low temperature AtSAMDC1 (426), AtSAMDC2 (260, 262, 451)
ACGTABREMOTIFA2OSEM ACGTGTC ABA responsive expression AtSAMDC1 (426), AtSAMDC2 (260, 282, 472)
ARF binding site motif TGTCTC auxin responsive element AtSAMDC4 (715, 838), AtSAMDC5 (526)
BoxII promoter motif TTAACC Transcriptional activator AtSAMDC4 (177, 356), AtSAMDC5 (377)
CACGTGMOTIF CACGTG essential for beta phaseolin gene expression during embryogenesis AtSAMDC1 (428), AtSAMDC2 (262, 453)
CCA1 binding site motif AGATTGTTAGATTGTT phytochrome regulation AtSAMDC3 (236, 555), AtSAMDC5 (180)
GADOWNAT ACGTGTC GA down regulated expression during seed germination AtSAMDC1 (426), AtSAMDC2 (260, 472)
GAREAT TAACAAG GA induced seed germination AtSAMDC1 (276), AtSAMDC2 (615, 659), AtSAMDC5 (871, 893)
I box promoter motif CTTATC light regulated expression AtSAMDC2 (328)
MYB1AT TGGTTA dehydration AtSAMDC1 (410, 639), AtSAMDC2 (724), AtSAMDC3 (659, 710), AtSAMDC4 (355, 510, 975)
MYB4 binding site motif ACCAAAC drought, salt, cold, wounding AtSAMDC1 (223), AtSAMDC2 (681), AtSAMDC3 (150, 232, 275, 723), AtSAMDC4 (428), AtSAMDC5 (487, 593)
MYB1LEPR AACTAAC defense related gene expression AtSAMDC4 (428), AtSAMDC5 (593)
RAV1-B binding site motif CACCTG domain for DNA binding protein AtSAMDC2 (508), AtSAMDC4 (418)
RY-repeat promoter motif CATGCATG
CATGCATG
seed protein related AtSAMDC3 (565)
TATA-box Motif TATAAA transcription AtSAMDC1 (61, 122, 379), AtSAMDC2 (26), AtSAMDC3 (403, 479, 550), AtSAMDC4 (134, 397, 679), AtSAMDC5 (89)
T-box promoter motif ACTTTG transcriptional activator AtSAMDC4 (559), AtSAMDC5 (548, 697)
W-box promoter motif AGTCAA wound response AtSAMDC1 (103, 652), AtSAMDC3 (201), AtSAMDC4 (523)
  1. Details of other motifs present in 1 kb (where available) of the promoter region are presented in the Additional file 1; Tables S4-S8