Motif name | Consensus sequence | Physiological responses | SAMDC gene promoters containing motifs (upstream location) |
---|---|---|---|
ABRE-like binding site motif | CACGTGTA and TCCACGTG | dehydration, low temperature | AtSAMDC1 (426), AtSAMDC2 (260, 262, 451) |
ACGTABREMOTIFA2OSEM | ACGTGTC | ABA responsive expression | AtSAMDC1 (426), AtSAMDC2 (260, 282, 472) |
ARF binding site motif | TGTCTC | auxin responsive element | AtSAMDC4 (715, 838), AtSAMDC5 (526) |
BoxII promoter motif | TTAACC | Transcriptional activator | AtSAMDC4 (177, 356), AtSAMDC5 (377) |
CACGTGMOTIF | CACGTG | essential for beta phaseolin gene expression during embryogenesis | AtSAMDC1 (428), AtSAMDC2 (262, 453) |
CCA1 binding site motif | AGATTGTTAGATTGTT | phytochrome regulation | AtSAMDC3 (236, 555), AtSAMDC5 (180) |
GADOWNAT | ACGTGTC | GA down regulated expression during seed germination | AtSAMDC1 (426), AtSAMDC2 (260, 472) |
GAREAT | TAACAAG | GA induced seed germination | AtSAMDC1 (276), AtSAMDC2 (615, 659), AtSAMDC5 (871, 893) |
I box promoter motif | CTTATC | light regulated expression | AtSAMDC2 (328) |
MYB1AT | TGGTTA | dehydration | AtSAMDC1 (410, 639), AtSAMDC2 (724), AtSAMDC3 (659, 710), AtSAMDC4 (355, 510, 975) |
MYB4 binding site motif | ACCAAAC | drought, salt, cold, wounding | AtSAMDC1 (223), AtSAMDC2 (681), AtSAMDC3 (150, 232, 275, 723), AtSAMDC4 (428), AtSAMDC5 (487, 593) |
MYB1LEPR | AACTAAC | defense related gene expression | AtSAMDC4 (428), AtSAMDC5 (593) |
RAV1-B binding site motif | CACCTG | domain for DNA binding protein | AtSAMDC2 (508), AtSAMDC4 (418) |
RY-repeat promoter motif | CATGCATG CATGCATG | seed protein related | AtSAMDC3 (565) |
TATA-box Motif | TATAAA | transcription | AtSAMDC1 (61, 122, 379), AtSAMDC2 (26), AtSAMDC3 (403, 479, 550), AtSAMDC4 (134, 397, 679), AtSAMDC5 (89) |
T-box promoter motif | ACTTTG | transcriptional activator | AtSAMDC4 (559), AtSAMDC5 (548, 697) |
W-box promoter motif | AGTCAA | wound response | AtSAMDC1 (103, 652), AtSAMDC3 (201), AtSAMDC4 (523) |