Davies PJ. Plant hormones. Dordrecht, The Netherlands: Kluwer; 1995.
Book
Google Scholar
Teale WD, Paponov IA, Klaus P. Auxin in action: signalling, transport and the control of plant growth and development. Nat Rev Mol Cell Biol. 2006;7:847–59.
Article
CAS
PubMed
Google Scholar
Enders TA, Strader LC. Auxin activity: past, present, and future. Am J Bot. 2015;102:180–96.
Article
CAS
PubMed
PubMed Central
Google Scholar
Chandler JW. Auxin response factors. Plant Cell Environ. 2016;39:1014–28.
Article
CAS
PubMed
Google Scholar
Guilfoyle TJ, Hagen G. Auxin response factors. Curr Opin Plant Biol. 2007;10:453–60.
Article
CAS
PubMed
Google Scholar
Quint M, Gray WM. Auxin signaling. Curr Opin Plant Biol. 2006;9:448–53.
Article
CAS
PubMed
PubMed Central
Google Scholar
Woodward AW, Bartel B. Auxin: regulation, action, and interaction. Ann Bot. 2005;5:707–35.
Article
Google Scholar
Abel S, Nguyen MD, Theologis A. The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J Mol Biol. 1995;251:533–49.
Article
CAS
PubMed
Google Scholar
Hagen G, Guilfoyle T. Auxin-responsive gene expression: genes, promoters and regulatory factors. Plant Mol Biol. 2002;49:373–85.
Article
CAS
PubMed
Google Scholar
Causier B, Ashworth M, Guo W, Davies B. The TOPLESS interactome: a framework for gene repression in Arabidopsis. Plant Physiol. 2012;158:423–38.
Article
CAS
PubMed
Google Scholar
Szemenyei H, Hannon M, Long JA. TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science. 2008;319:1384–6.
Article
CAS
PubMed
Google Scholar
Tiwari SB, Hagen G, Guilfoyle TJ. Aux/IAA proteins contain a potent transcriptional repression domain. Plant Cell. 2004;16:533–43.
Article
CAS
PubMed
PubMed Central
Google Scholar
Gray WM, Kepinski S, Rouse D, Leyser O, Estelle M. Auxin regulates SCFTIR1-dependent degradation of AUX/IAA proteins. Nature. 2001;414:271–6.
Article
CAS
PubMed
Google Scholar
Tan X, Calderonvillalobos LIA, Sharon M, Zheng C, Robinson CV, Estelle M, Zheng N. Mechanism of auxin perception by the TIR1 ubiquitin ligase. Nature. 2007;446:640–5.
Article
CAS
PubMed
Google Scholar
Ramos JA, Zenser N, Leyser O, Callis J. Rapid degradation of auxin/indoleacetic acid proteins requires conserved amino acids of domain II and is proteasome dependent. Plant Cell. 2001;13:2349–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Korasick DA, Westfall CS, Soon Goo L, Nanao MH, Renaud D, Gretchen H, Guilfoyle TJ, Jez JM, Strader LC. Molecular basis for AUXIN RESPONSE FACTOR protein interaction and the control of auxin response repression. Proc Natl Acad Sci U S A. 2014;111:5427–32.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kepinski S, Leyser O. Ubiquitination and auxin signaling: a degrading story. Plant Cell. 2002;14:S81–95.
CAS
PubMed
PubMed Central
Google Scholar
Zhu Z, Liu Y, Liu S, Mao C, Wu Y, Wu P. A gain-of-function mutation in OsIAA11 affects lateral root development in rice. Mol Plant. 2012;5:154–61.
Article
CAS
PubMed
Google Scholar
Ni J, Wang G, Zhu Z, Zhang H, Wu Y, Wu P. OsIAA23-mediated auxin signaling defines postembryonic maintenance of QC in rice. Plant J. 2011;68:433–42.
Article
CAS
Google Scholar
Kitomi Y, Inahashi H, Takehisa H, Sato Y, Inukai Y. OsIAA13-mediated auxin signaling is involved in lateral root initiation in rice. Plant Sci. 2012;190:116–22.
Article
CAS
PubMed
Google Scholar
Reed JW. Roles and activities of aux/IAA proteins in Arabidopsis. Trends Plant Sci. 2001;6:420–5.
Article
CAS
PubMed
Google Scholar
Yang X, Lee S, Jh S, Dharmasiri S, Dharmasiri N, Ge L, Jensen C, Hangarter R, Hobbie L, Estelle M, et al. Plant J. 2004;40:772–82.
Article
CAS
PubMed
Google Scholar
Jung H, Lee D-K, Choi YD, Kim J-K. OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci. 2015;236:304–12.
Article
CAS
PubMed
Google Scholar
Shen C, Yue R, Yang Y, Zhang L, Sun T, Xu L, Tie S, Wang H. Genome-wide identification and expression profiling analysis of the Aux/IAA gene family in Medicago truncatula during the early phase of Sinorhizobium meliloti infection. PLoS One. 2014;9:e107495.
Article
PubMed
PubMed Central
Google Scholar
Rinaldi MA, Liu J, Enders TA, Bartel B, Strader LC. A gain-of-function mutation in IAA16 confers reduced responses to auxin and abscisic acid and impedes plant growth and fertility. Plant Mol Biol. 2012;79:359–73.
Article
CAS
PubMed
PubMed Central
Google Scholar
Rogg L, Lasswell J, Bartel B. A gain-of-function mutation in IAA28 suppresses lateral root development. Plant Cell. 2001;13:465–80.
Article
CAS
PubMed
PubMed Central
Google Scholar
Ioio RD, Nakamura K, Moubayidin L, Perilli S, Taniguchi M, Morita MT, Aoyama T, Costantino P, Sabatini S. A genetic framework for the control of cell division and differentiation in the root meristem. Science. 2008;322:1380–4.
Article
Google Scholar
Hamann T, Mayer U, Jurgens G. The auxin-insensitive bodenlos mutation affects primary root formation and apical-basal patterning in the Arabidopsis embryo. Development. 1999;126:1387–95.
CAS
PubMed
Google Scholar
Hamann T, Benkova E, Baurle I, Kientz M, Jurgens G. The Arabidopsis BODENLOS gene encodes an auxin response protein inhibiting MONOPTEROS-mediated embryo patterning. Genes Dev. 2002;16:1610–5.
Article
CAS
PubMed
PubMed Central
Google Scholar
Walker JC, Key JL. Isolation of cloned cDNAs to auxin-responsive poly(a)+RNAs of elongating soybean hypocotyl. Proc Natl Acad Sci U S A. 1982;79:7185–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kim J, Harter K, Theologis A. Protein–protein interactions among the aux/IAA proteins. Proc Natl Acad Sci U S A. 1997;94:11786–91.
Article
CAS
PubMed
PubMed Central
Google Scholar
Overvoorde PJ, Okushima Y, Alonso JM, Chan A, Chang C, Ecker JR, Hughes BJ, Liu A, Onodera C, Quach H. Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana. Plant Cell. 2005;17:3282–300.
Article
CAS
PubMed
PubMed Central
Google Scholar
Kalluri UC, DiFazio SP, Brunner AM, Tuskan GA. Genome-wide analysis of Aux/IAA and ARF gene families in Populus trichocarpa. BMC Mol Biol. 2007;7:59.
Google Scholar
Jain M, Kaur N, Garg RK, Thakur JK, Tyagi AK, Khurana JP. Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Funct Integr Genomics. 2006;6:47–59.
Article
CAS
PubMed
Google Scholar
Wang S, Bai Y, Shen C, Wu Y, Zhang S, Jiang D, Guilfoyle T, Chen M, Qi Y. Auxin-related gene families in abiotic stress response in Sorghum bicolor. Funct Integr Genomics. 2010;10:533–46.
Article
CAS
PubMed
Google Scholar
Wang Y, Deng D, Bian Y, Lv Y, Xie Q. Genome-wide analysis of primary auxin-responsive Aux/IAA gene family in maize (Zea mays. L.). Mol Biol Rep. 2010;37:3991–4001.
Article
CAS
PubMed
Google Scholar
Qiao L, Zhang X, Han X, Zhang L, Li X, Zhan H, Ma J, Luo P, Zhang W, Cui L. A genome-wide analysis of the auxin/indole-3-acetic acid gene family in hexaploid bread wheat (Triticum aestivum L.). Front Plant Sci. 2015;6:770.
Article
PubMed
PubMed Central
Google Scholar
Singh VK, Jain M. Genome-wide survey and comprehensive expression profiling of Aux/IAA gene family in chickpea and soybean. Front Plant Sci. 2015;6:918.
PubMed
PubMed Central
Google Scholar
Wu J, Peng Z, Liu S, He Y, Cheng L, Kong F, Wang J, Lu G. Genome-wide analysis of Aux/IAA gene family in Solanaceae species using tomato as a model. Mol Gen Genomics. 2012;287:295–311.
Article
CAS
Google Scholar
Wu J, Liu S, Guan X, Chen L, He Y, Wang J, Lu G. Genome-wide identification and transcriptional profiling analysis of auxin response-related gene families in cucumber. BMC Res Notes. 2014;7:218.
Article
PubMed
PubMed Central
Google Scholar
Paul P, Dhandapani V, Rameneni JJ, Li X, Sivanandhan G, Choi SR, Pang W, Im S, Lim YP. Genome-wide analysis and characterization of Aux/IAA family genes in Brassica rapa. PLoS One. 2016;11:e0151522.
Article
PubMed
PubMed Central
Google Scholar
Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IAP, Zhao M, Ma J, Yu J, Huang S, et al. The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat Commun. 2014;5:3930.
CAS
PubMed
PubMed Central
Google Scholar
Chalhoub B, Denoeud F, Liu S, Parkin IAP, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, et al. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science. 2014;345:950–3.
Article
CAS
PubMed
Google Scholar
Østergaard L, King GJ. Standardized gene nomenclature for the Brassica genus. Plant Methods. 2008;4:10.
Article
PubMed
PubMed Central
Google Scholar
Krzywinski M, Schein JE, Birol I, Connors JM, Gascoyne RD, Horsman DE, Jones SJ, Marra MA. Circos: an information aesthetic for comparative genomics. Genome Res. 2009;19:1639–45.
Article
CAS
PubMed
PubMed Central
Google Scholar
Waterhouse A, Procter JB, Martin DMA, Clamp M, Barton GJ. Jalview version 2-a multiple sequence alignment editor and analysis workbench. Bioinformatics. 2009;25:1189–91.
Article
CAS
PubMed
PubMed Central
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9.
Article
CAS
PubMed
PubMed Central
Google Scholar
Liu J, Hua W, Hu Z, Yang H, Zhang L, Li R, Deng L, Sun X, Wang X, Wang H. Natural variation in ARF18 gene simultaneously affects seed weight and silique length in polyploid rapeseed. Proc Natl Acad Sci U S A. 2015;112:E5123–32.
Article
CAS
PubMed
PubMed Central
Google Scholar
Y-H L, Arnaud D, Belcram H, Falentin C, Rouault P, Piel N, Lucas M-O, Just J, Renard M, Delourme R. A dominant point mutation in a RINGv E3 ubiquitin ligase Homoeologous gene leads to Cleistogamy in Brassica napus. Plant Cell. 2012;24:4875–91.
Article
Google Scholar
Li H, Hagen G, Guilfoyle TJ. Do some IAA proteins have two repression domains? Plant Signal Behav. 2011;6:858–60.
Article
CAS
PubMed
PubMed Central
Google Scholar
Piya S, Shrestha SK, Binder B, Jr SC, Hewezi T. Protein-protein interaction and gene co-expression maps of ARFs and aux/IAAs in Arabidopsis. Front Plant Sci. 2014;5:744.
Article
PubMed
PubMed Central
Google Scholar
Villalobos LIAC, Lee S, Oliveira DC, Ivetac A, Brandt W, Armitage L, Sheard LB, Tan X, Parry G, Mao H, et al. A combinatorial TIR1/AFB-aux/IAA co-receptor system for differential sensing of auxin. Nat Chem Biol. 2012;8:477–85.
Article
PubMed Central
Google Scholar
Dreher KA, Brown J, Saw RE, Callis J. The Arabidopsis aux/IAA protein family has diversified in degradation and auxin responsiveness. Plant Cell. 2006;18:699–714.
Article
CAS
PubMed
PubMed Central
Google Scholar
Wei Y, Li J, Lu J, Tang Z, Pu D, Chai Y. Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis. Mol Biol Rep. 2006;34:105–20.
Article
PubMed
Google Scholar
Hegedus DD, Yu M, Baldwin D, Gruber MY, Sharpe AG, Parkin IAP, Whitwill S, Lydiate DJ. Molecular characterization of Brassica napus NAC domain transcriptional activators induced in response to biotic and abiotic stress. Plant Mol Biol. 2003;53:383–97.
Article
CAS
PubMed
Google Scholar
Cheng H, Hao M, Wang W, Mei D, Tong C, Wang H, Liu J, Fu L, Hu Q. Genomic identification, characterization and differential expression analysis of SBP-boxgene family in Brassica napus. BMC Plant Biol. 2016;16:196.
Article
PubMed
PubMed Central
Google Scholar
Liang Y, Xiong Z, Zheng J, Xu D, Zhu Z, Xiang J, Gan J, Raboanatahiry NH, Yin Y, Li M. Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus. Sci Rep. 2016;6:24265.
Article
CAS
PubMed
PubMed Central
Google Scholar
Cannon SB, Mitra A, Baumgarten A, Young ND, May G. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol. 2004;4:10.
Article
PubMed
PubMed Central
Google Scholar
Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun J-H, Bancroft I, Cheng F, et al. The genome of the mesopolyploid crop species Brassica rapa. Nat Genet. 2011;43:1035–9.
Article
CAS
PubMed
Google Scholar
Muto H, Watahiki MK, Nakamoto D, Kinjo M, Yamamoto KT. Specificity and similarity of functions of the Aux/IAA genes in auxin signaling of arabidopsis revealed by promoter-exchange experiments among MSG2/IAA19, AXR2/IAA7, and SLR/IAA14. Plant Physiol. 2007;144(1):187–96.
Article
CAS
PubMed
PubMed Central
Google Scholar
Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol. 2003;18:292–8.
Article
Google Scholar