Skip to main content

Table 3 The list of MTAs and SNP markers significant with main agronomic traits

From: GWAS of agronomic traits in soybean collection included in breeding pool in Kazakhstan

Traits Chr. Position P value R2(%) MAF Allele Effect
VER2 06 20,370,075 5.8011E-5 24.6 0.179 C/T 5.77
19 49,964,637 7.2399E-6 21.2 0.152 C/T 5.73
R2R4 2 45,940,601 2.4647E-5 24.0 0.232 C/T −10.18
10 3,066,211 1.2186E-5 23.5 0.268 C/T −1.84
17 14,418,215 5.4006E-5 18.9 0.116 A/G −5.13
20 3,020,597 1.0172E-5 23.3 0.313 C/T −3.43
20 14,721,991 4.6494E-6 20.5 0.156 A/G 12.37
20 23,536,158 2.6634E-5 17.1 0.344 A/G −7.95
R2R8 5 8,597,246 4.0476E-5 14.7 0.063 C/T 17.73
20 3,020,597 1.0172E-5 23.3 0.313 C/T −3.43
20 8,185,857 4.1578E-6 13.9 0.085 C/T −6.03
R4R8 5 8,597,246 4.0476E-5 14.7 0.063 C/T 17.73
14 9,803,364 8.8788E-5 19.5 0.219 C/T −12.50
14 28,158,698 1.9669E-5 18.4 0.290 C/T 4.85
19 27,283,886 3.1538E-5 21.2 0.321 C/T 4.92
VER8 10 48,586,134 5.5824E-5 24.9 0.259 A/C 3.32
  14 7,151,265 8.5988E-5 17.3 0.446 A/G −10.63
  19 48,168,077 1.0025E-5 30.7 0.201 A/G −6.81
  20 3,020,597 1.0172E-5 23.3 0.313 C/T −3.43
  20 8,185,857 4.1578E-6 13.9 0.085 C/T −6.03
  20 14,721,991 4.6494E-6 20.5 0.156 A/G 12.37
  20 23,536,158 2.6634E-5 17.1 0.344 A/G −7.95
PH 9 42,241,644 4.7641E-5 15.9 0.487 A/G −14.94
20 8,185,857 4.1578E-6 13.9 0.085 C/T −6.03
HFB 9 42,578,079 4.1561E-5 17.2 0.112 A/G 4.20
20 40,765,691 3.8709E-5 18.5 0.299 A/G 5.46
NFN 14 9,803,364 8.8788E-5 19.5 0.219 C/T −12.50
19 30,103,637 8.2608E-5 17.3 0.317 G/T −5.17
NSP 8 14,431,777 1.6689E-5 31.0 0.152 A/C 5.04
10 981,062 1.7273E-5 30.5 0.156 A/G −7.73
20 8,185,857 4.1578E-6 13.9 0.085 C/T −6.03
20 30,417,244 4.7329E-5 15.7 0.094 C/T −13.06
TSW 2 12,244,605 6.6226E-5 22.9 0.496 A/G −31.82
4 516,796 8.8647E-5 21.7 0.335 A/G −33.08
5 3,859,212 1.1104E-5 24.8 0.357 C/T −32.22
7 16,031,010 6.2361E-5 18.8 0.161 C/T −22.28
17 10,106,704 2.7099E-5 24.7 0.107 C/T −49.48
20 14,721,991 4.6494E-6 20.5 0.156 A/G 12.37
YP 14 27,937,142 3.9461E-5 15.4 0.094 C/T −4.66
17 14,418,215 5.4006E-5 18.9 0.116 A/G −5.13
20 8,185,857 4.1578E-6 13.9 0.085 C/T −6.03
20 30,417,244 4.7329E-5 15.7 0.094 C/T −13.06