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Table 4 Summary of total raw and clean sequence tags

From: Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

Item MD52ne MD90ne
Time point 15 DPA 20 DPA 15 DPA 20DPA
Replication Rep. 1 Rep. 2 Rep. 1 Rep. 2 Rep. 1 Rep. 2 Rep. 1 Rep. 2
Total bases (million) 3382.41 3247.35 3187.87 3382.75 3347.42 3313.08 3384.49 3096.28
Raw reads (million) 33.49 32.15 31.56 33.49 33.14 32.80 33.51 30.66
GC% 44.31 44.21 44.69 45.32 44.28 44.48 45.00 45.03
Mapped reads (million) 27.54 27.12 25.51 25.87 27.9 27.54 27.10 24.78
% Mapped reads 82.23 84.35 80.83 77.25 84.19 83.96 80.87 80.82
Reads in genes (million) 23.20 23.75 22.34 22.36 24.25 24.24 23.72 21.7
% reads in genes 69.27 73.87 70.79 66.77 73.17 73.9 70.78 70.78
Total genes >1 rpkm^ 46045 46263 48202 48532 47014 43868 47795 47267
Genes >1 rpkm^ (%) 75.16 75.52 78.68 79.22 76.74 71.61 78.02 77.15
Genes >0 Reads 47097 47319 49253 49600 48099 45007 48858 48390
Total genes >0 Reads (%) 76.88 77.24 80.40 80.96 78.51 73.47 79.75 78.99