Table 4 Summary of total raw and clean sequence tags
Item | MD52ne | MD90ne | ||||||
|---|---|---|---|---|---|---|---|---|
Time point | 15 DPA | 20 DPA | 15 DPA | 20DPA | ||||
Replication | Rep. 1 | Rep. 2 | Rep. 1 | Rep. 2 | Rep. 1 | Rep. 2 | Rep. 1 | Rep. 2 |
Total bases (million) | 3382.41 | 3247.35 | 3187.87 | 3382.75 | 3347.42 | 3313.08 | 3384.49 | 3096.28 |
Raw reads (million) | 33.49 | 32.15 | 31.56 | 33.49 | 33.14 | 32.80 | 33.51 | 30.66 |
GC% | 44.31 | 44.21 | 44.69 | 45.32 | 44.28 | 44.48 | 45.00 | 45.03 |
Mapped reads (million) | 27.54 | 27.12 | 25.51 | 25.87 | 27.9 | 27.54 | 27.10 | 24.78 |
% Mapped reads | 82.23 | 84.35 | 80.83 | 77.25 | 84.19 | 83.96 | 80.87 | 80.82 |
Reads in genes (million) | 23.20 | 23.75 | 22.34 | 22.36 | 24.25 | 24.24 | 23.72 | 21.7 |
% reads in genes | 69.27 | 73.87 | 70.79 | 66.77 | 73.17 | 73.9 | 70.78 | 70.78 |
Total genes >1 rpkm^ | 46045 | 46263 | 48202 | 48532 | 47014 | 43868 | 47795 | 47267 |
Genes >1 rpkm^ (%) | 75.16 | 75.52 | 78.68 | 79.22 | 76.74 | 71.61 | 78.02 | 77.15 |
Genes >0 Reads | 47097 | 47319 | 49253 | 49600 | 48099 | 45007 | 48858 | 48390 |
Total genes >0 Reads (%) | 76.88 | 77.24 | 80.40 | 80.96 | 78.51 | 73.47 | 79.75 | 78.99 |