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Table 2 Genes identified in all contrasts [Base -  Base "zero" (B - B0); Middle – Base (M-B); Tip – Middle (T-M)]

From: Physiological and transcriptional analyses of developmental stages along sugarcane leaf

 

Contrast

  

Gene ID

B-B0

M-B

P-M

Annotation

Validation

SP803280_c109776_g3

2.48

1.70

2.07

Transcription factor TCP5

0.98

SP803280_c88088_g1

-1.10

-2.11

-1.71

N/I

0.26

SP803280_c108434_g2

-1.50

-1.60

-1.90

Protein trichome birefringence

0.27

SP803280_c113688_g1

-1.51

-2.24

-1.49

4-hydroxyphenylacetaldehyde oxime monooxygenase

0.96

SP803280_c103567_g1

-1.58

-1.89

-1.54

N/I

0.62

SP803280_c110116_g1

-1.62

-2.01

2.11

Cysteine-rich repeat secretory protein 38

0.56

SP803280_c99583_g1

-1.92

-2.74

-3.89

N/I

0.94

SP803280_c109581_g5

-2.01

-2.96

2.13

Methylsterol monooxygenase 1-2

0.71

SP803280_c87779_g1

-2.33

-2.12

-2.12

N/I

0.42

SP803280_c81421_g1

-2.37

-1.81

-2.87

Cell wall / vacuolar inhibitor of fructosidase 2

0.56

SP803280_c114207_g1

-2.56

-2.83

-2.88

Cycloartenol-C-24-methyltransferase 1

0.79

SP803280_c100769_g2

-2.66

-3.24

-3.62

N/I

0.99

SP803280_c70793_g2

-2.74

-2.01

-1.97

N/I

0.87

SP803280_c116667_g1

-3.61

5.54

2.25

Naringenin,2-oxoglutarate 3-dioxygenase

0.69

  1. The number bellow each contrast indicates the log Fold Change in the respective contrast
  2. Validation column indicates the average coefficient of determination (R2) between logCPM (from RNA-seq data) and logΔCt (qRT-PCR data)