Wang TY, Ma XL, Li Y, Bai DP, Liu C, Liu ZZ, et al. Changes in yield and yield components of single-cross maize hybrids released in china between 1964 and 2001. Crop Science. 2011;51(2):512–25.
Article
Google Scholar
Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez GJ, Buckler E, Doebley J. A single domestication for maize shown by multilocus microsatellite genotyping. Proc Natl Acad Sci U S A. 2002;99(9):6080–4.
Article
PubMed Central
CAS
PubMed
Google Scholar
Mir C, Zerjal T, Combes V, Dumas F, Madur D, Bedoya C, et al. Out of America: tracing the genetic footprints of the global diffusion of maize. Theor Appl Genet. 2013;126(11):2671–82.
Article
CAS
PubMed
Google Scholar
Yang Z, Zhang E, Li J, Jiang Y, Wang Y, Hu Y, et al. Analyses of sequence polymorphism and haplotype diversity of LEAFY genes revealed post-domestication selection in the Chinese elite maize inbred lines. Mol Biol Rep. 2014;41(2):1117–25.
Article
PubMed
Google Scholar
Dubreuil P, Warburton M, Chastanet M, Hoisington D, Charcosset A. More on the introduction of temperate maize into Europe: Large-scale bulk SSR genotyping and new historical elements. Maydica. 2006;51(2):281–91.
Google Scholar
Smith S. Pedigree background changes in US hybrid maize between 1980 and 2004. Crop Science. 2007;47(5):1914–26.
Article
Google Scholar
Bracco M, Lia VV, Hernandez JC, Poggio L, Gottlieb AM. Genetic diversity of maize landraces from lowland and highland agro-ecosystems of Southern South America: implications for the conservation of native resources. Ann Appl Biol. 2012;160(3):308–21.
Article
Google Scholar
Hallauer AR. Evolution of plant breeding. Crop Breed Appl Biot. 2011;11(3):197–206.
Article
Google Scholar
Jiao Y, Zhao H, Ren L, Song W, Zeng B, Guo J, et al. Genome-wide genetic changes during modern breeding of maize. Nat Genet. 2012;44(7):812–5.
Article
CAS
PubMed
Google Scholar
Mikel MA, Dudley JW. Evolution of north American dent corn from public to proprietary germplasm. Crop Science. 2006;46(3):1193–205.
Article
Google Scholar
Schnable JC. Genome evolution in maize: from genomes back to genes. Annu Rev Plant Biol. 2015;66:329–43.
Article
CAS
PubMed
Google Scholar
Romay MC, Millard MJ, Glaubitz JC, Peiffer JA, Swarts KL, Casstevens TM, et al. Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol. 2013;14(6):R55.
Article
PubMed Central
PubMed
Google Scholar
Troyer AF, Hendrickson LG. Background and importance of 'Minnesota 13' corn. Crop Science. 2007;47(3):905–14.
Article
Google Scholar
Peng B, Li Y, Wang Y, Liu C, Liu Z, Tan W, et al. QTL analysis for yield components and kernel-related traits in maize across multi-environments. Theor Appl Genet. 2011;122(7):1305–20.
Article
PubMed
Google Scholar
Upadyayula N, da Silva HS, Bohn MO, Rocheford TR. Genetic and QTL analysis of maize tassel and ear inflorescence architecture. Theor Appl Genet. 2006;112(4):592–606.
Article
CAS
PubMed
Google Scholar
Vidal-Martinez VA, Clegg MD, Johnson BE. Genetic studies on maize pollen and grain yield and their yield components. Maydica. 2001;46(1):35–40.
Google Scholar
Westengen OT, Berg PR, Kent MP, Brysting AK. Spatial structure and climatic adaptation in African maize revealed by surveying SNP diversity in relation to global breeding and landrace panels. Plos One. 2012;7(10), e47832.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lu YL, Yan JB, Guimaraes CT, Taba S, Hao ZF, Gao SB, et al. Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theor Appl Genet. 2009;120(1):93–115.
Article
CAS
PubMed
Google Scholar
Wu X, Li Y, Shi Y, Song Y, Wang T, Huang Y, et al. Fine genetic characterization of elite maize germplasm using high-throughput SNP genotyping. Theor Appl Genet. 2014;127(3):621–31.
Article
PubMed
Google Scholar
Yan J, Shah T, Warburton ML, Buckler ES, McMullen MD, Crouch J. Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers. Plos One. 2009;4(12), e8451.
Article
PubMed Central
PubMed
Google Scholar
Li H, Peng Z, Yang X, Wang W, Fu J, Wang J, et al. Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nat Genet. 2013;45(1):43–50.
Article
CAS
PubMed
Google Scholar
Schaefer CM, Bernardo R. Population Structure and Single Nucleotide Polymorphism Diversity of Historical Minnesota Maize Inbreds. Crop Science. 2013;53(4):1529.
Article
CAS
Google Scholar
van Heerwaarden J, Hufford MB, Ross-Ibarra J. Historical genomics of North American maize. Proc Natl Acad Sci. 2012;109(31):12420–5.
Article
PubMed Central
PubMed
Google Scholar
Hoisington D, Khairallah M, Reeves T, Ribaut JV, Skovmand B, Taba S, et al. Plant genetic resources: What can they contribute toward increased crop productivity? Proc Natl Acad Sci U S A. 1999;96(11):5937–43.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lee M. Genome projects and gene pools: New germplasm for plant breeding? Proc Natl Acad Sci U S A. 1998;95(5):2001–4.
Article
PubMed Central
CAS
PubMed
Google Scholar
Weller SG, Sakai AK. Using phylogenetic approaches for the analysis of plant breeding system evolution. Annu Rev Ecol Syst. 1999;30:167–99.
Article
Google Scholar
Jost LOU. GSTand its relatives do not measure differentiation. Mol Ecol. 2008;17(18):4015–26.
Article
PubMed
Google Scholar
Haag T, Santos AS, Sana DA, Morato RG, Cullen L, Crawshaw PG, et al. The effect of habitat fragmentation on the genetic structure of a top predator: loss of diversity and high differentiation among remnant populations of Atlantic Forest jaguars (Panthera onca). Mol Ecol. 2010;19(22):4906–21.
Article
CAS
PubMed
Google Scholar
Liu H, Wang X, Warburton ML, Wen W, Jin M, Deng M, et al. Genomic, transcriptomic, and phenomic variation reveals the complex adaptation of modern maize breeding. Mol Plant. 2015;8(6):871–84.
Article
CAS
PubMed
Google Scholar
Hufford MB, Xu X, van Heerwaarden J, Pyhajarvi T, Chia JM, Cartwright RA, et al. Comparative population genomics of maize domestication and improvement. Nat Genet. 2012;44(7):808–U118.
Article
CAS
PubMed
Google Scholar
Bouchet S, Servin B, Bertin P, Madur D, Combes V, Dumas F, et al. Adaptation of maize to temperate climates: Mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus. Plos One. 2013;8(8), e71377.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ducrocq S, Madur D, Veyrieras JB, Camus-Kulandaivelu L, Kloiber-Maitz M, Presterl T, et al. Key impact of Vgt1 on flowering time adaptation in maize: Evidence from association mapping and ecogeographical information. Genetics. 2008;178(4):2433–7.
Article
PubMed Central
PubMed
Google Scholar
Morin PA, Martien KK, Taylor BL. Assessing statistical power of SNPs for population structure and conservation studies. Mol Ecol Resour. 2009;9(1):66–73.
Article
CAS
PubMed
Google Scholar
Pritchard JK, Stephens M, Donnelly P. Inference of population structure using multilocus genotype data. Genetics. 2000;155(2):945–59.
PubMed Central
CAS
PubMed
Google Scholar
Yang XH, Xu YB, Shah T, Li HH, Han ZH, Li JS, et al. Comparison of SSRs and SNPs in assessment of genetic relatedness in maize. Genetica. 2011;139(8):1045–54.
Article
CAS
PubMed
Google Scholar
Hamblin MT, Warburton ML, Buckler ES. Empirical comparison of Simple Sequence Repeats and single nucleotide polymorphisms in assessment of maize diversity and relatedness. Plos One. 2007;2(12), e1367.
Article
PubMed Central
PubMed
Google Scholar
Yu JM, Zhang ZW, Zhu CS, Tabanao DA, Pressoir G, Tuinstra MR, et al. Simulation appraisal of the adequacy of number of background markers for relationship estimation in association mapping. Plant genome. 2009;2(1):63–77.
Article
CAS
Google Scholar
Yu JM, Pressoir G, Briggs WH, Bi IV, Yamasaki M, Doebley JF, et al. A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet. 2006;38(2):203–8.
Article
CAS
PubMed
Google Scholar
Technow F, Schrag TA, Schipprack W, Melchinger AE. Identification of key ancestors of modern germplasm in a breeding program of maize. Theor Appl Genet. 2014;127(12):2545–53.
Article
CAS
PubMed
Google Scholar
Yang XH, Gao SB, Xu ST, Zhang ZX, Prasanna BM, Li L, et al. Characterization of a global germplasm collection and its potential utilization for analysis of complex quantitative traits in maize. Mol Breeding. 2011;28(4):511–26.
Article
Google Scholar
Wang R, Yu Y, Zhao J, Shi Y, Song Y, Wang T, et al. Population structure and linkage disequilibrium of a mini core set of maize inbred lines in China. Theor Appl Genet. 2008;117(7):1141–53.
Article
CAS
PubMed
Google Scholar
Lorenz A, Hoegemeyer T. The phylogenetic relationships of US maize germplasm. Nat Genet. 2013;45(8):844–5.
Article
CAS
PubMed
Google Scholar
Loaisiga CH, Rocha O, Brantestam AK, Salomon B, Merker A. Genetic diversity and gene flow in six accessions of Meso-America teosintes. Genet Resour Crop Ev. 2012;59(1):95–111.
Article
Google Scholar
Wen W, Franco J, Chavez-Tovar VH, Yan J, Taba S. Genetic characterization of a core set of a tropical maize race Tuxpeno for further use in maize improvement. Plos One. 2012;7(3), e32626.
Article
PubMed Central
CAS
PubMed
Google Scholar
Flint-Garcia SA, Thuillet AC, Yu JM, Pressoir G, Romero SM, Mitchell SE, et al. Maize association population: a high-resolution platform for quantitative trait locus dissection. Plant J. 2005;44(6):1054–64.
Article
CAS
PubMed
Google Scholar
Li Y, Shi YS, Cao YS, Wang TY. Establishment of a core collection for maize germplasm preserved in Chinese National Genebank using geographic distribution and characterization data. Genet Resour Crop Ev. 2004;51(8):845–52.
Article
Google Scholar
Brown PJ, Upadyayula N, Mahone GS, Tian F, Bradbury PJ, Myles S, et al. Distinct genetic architectures for male and female inflorescence traits of maize. PLoS genetics. 2011;7(11), e1002383.
Article
PubMed Central
CAS
PubMed
Google Scholar
Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW. Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci U S A. 1984;81(24):8014–8.
Article
PubMed Central
CAS
PubMed
Google Scholar
Patterson N, Price AL, Reich D. Population structure and eigenanalysis. PLoS genetics. 2006;2(12):2074–93.
Article
CAS
Google Scholar
Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y, Buckler ES. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics. 2007;23(19):2633–5.
Article
CAS
PubMed
Google Scholar
Evanno G, Regnaut S, Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 2005;14(8):2611–20.
Article
CAS
PubMed
Google Scholar
Jakobsson M, Rosenberg NA. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics. 2007;23(14):1801–6.
Article
CAS
PubMed
Google Scholar
Legesse BW, Myburg AA, Pixley KV, Botha AM. Genetic diversity of African maize inbred lines revealed by SSR markers. Hereditas. 2007;144(1):10–7.
Article
CAS
PubMed
Google Scholar
Zhang W, Sun ZR. Random local neighbor joining: A new method for reconstructing phylogenetic trees. Mol Phylogenet Evol. 2008;47(1):117–28.
Article
CAS
PubMed
Google Scholar
Liu KJ, Muse SV. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics. 2005;21(9):2128–9.
Article
CAS
PubMed
Google Scholar
Hill WG, Weir BS. Maximum-likelihood estimation of gene location by linkage disequilibrium. Am J Hum Genet. 1994;54(4):705–14.
PubMed Central
CAS
PubMed
Google Scholar
Yang RC. Estimating hierarchical F-statistics. Evolution. 1998;52(4):950–6.
Article
Google Scholar
Lipka AE, Tian F, Wang QS, Peiffer J, Li M, Bradbury PJ, et al. GAPIT: genome association and prediction integrated tool. Bioinformatics. 2012;28(18):2397–9.
Article
CAS
PubMed
Google Scholar