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Table 2 Annotation summaries for Roche-based and Illumina-based transcriptomes

From: Transcriptome analysis of 20 taxonomically related benzylisoquinoline alkaloid-producing plants

    Roche GS-FLX Titanium Illumina GA/HiSeq
No. Abbrev. Plant Unigenes Overall annotated High-level annotated GO annotated EC number allocated Unigenes Overall annotated High-level annotated GO annotated EC number allocated
1 AME Argemone mexicana 25,499 22,121 17,979 21,974 3086 75,101 60,836 45,404 60,254 7653
2 BTH Berberis thunbergii 41,672 33,548 23,243 33,080 4197 88,302 61,576 41,927 60,561 7289
3 CMA Chelidonium majus 23,678 19,635 13,977 19,460 2368 45,005 42,057 33,449 41,956 6092
4 CMU Cissampelos mucronata 35,166 27,451 19,865 27,139 3147 69,822 32,209 22,943 31,597 3314
5 CTR Cocculus trilobus 34,783 26,678 18,701 26,338 3197 84,793 33,055 21,961 30,542 432
6 CCH Corydalis chelanthifolia 22,511 19,161 14,633 19,024 2433 51,797 48,423 42,784 48,139 7738
7 ECA Eschscholzia californica 32,150 28,430 21,403 28,194 4221 42,167 38,332 32,677 38,063 6545
8 GFL Glaucium flavum 26,520 20,945 15,645 20,725 2719 31,100 31,100 19,669 31,100 3231
9 HCA Hydrastis canadensis 23,809 20,443 15,491 20,230 2511 33,335 33,335 20,898 33,335 3637
10 JDI Jeffersonia diphylla 38,773 24,583 16,777 24,199 2581 86,832 31,712 22,574 30,842 3118
11 MAQ Mahonia aquifolium 36,429 30,209 20,624 29,805 3581 98,375 53,093 33,434 47,040 521
12 MCA Menispermum canadense 36,399 31,715 24,565 31,482 4495 87,141 70,524 52,713 69,877 8924
13 NDA Nandina domestica 45,387 33,501 24,308 33,010 4186 70,425 53,109 38,428 52,531 6553
14 NSA Nigella sativa 50,508 36,231 25,560 35,591 4526 67,591 41,260 29,127 40,316 4807
15 PBR Papaver bracteatum 46,224 33,168 24,381 32,767 4988 70,428 56,463 37,334 53,039 6793
16 SCA Sanguinaria canadensis 25,652 20,493 15,938 20,301 2621 53,019 47,247 40,122 46,890 7715
17 SDI Stylophorum diphyllum 43,568 34,954 26,144 34,614 5115 50,125 40,797 30,157 40,324 5276
18 TFL Thalictrum flavum 21,146 17,609 12,121 17,431 2294 41,982 33,120 23,900 32,711 4123
19 TCO Tinospora cordifolia 34,518 28,044 21,199 27,795 3444 81,927 35,851 24,174 34,712 3386
20 XSI Xanthoriza simplicissima 42,969 33,657 22,165 33,187 3740 48,447 39,281 27,434 38,831 4642
   Average 34,368 27,128 19,736 26,817 3472 63,886 44,169 32,055 43,133 5089