Li FS. Studies on the ecological geographical distribution of the Chinese resources of wild soybean. Sci Agr Sin. 1993;26:47–55.
Google Scholar
Wen Z, Ding Y, Zhao T, Gai J. Genetic diversity and peculiarity of annual wild soybean (G.soja Sieb. et Zucc.) from various eco-regions in China. Theor Appl Genet. 2009;119:371–81.
Article
CAS
PubMed
Google Scholar
Wang KJ, Li XH. Phylogenetic relationships, interspecific hybridization and origin of some rare characters of wild soybean in the subgenus Glycine soja in China. Genet Resour Crop Evol. 2012;59:73–85.
Article
CAS
Google Scholar
Upadhyaya H, Reddy K, Singh S, Gowda C. Phenotypic diversity in Cajanus species and identification of promising sources for agronomic traits and seed protein content. Genet Resour Crop Evol. 2013;60:39–59.
Article
Google Scholar
Concibido VC, La Vallee B, Mclaird P, Pineda N, Meyer J, Hummel L, et al. Introgression of a quantitative trait locus for yield from Glycine soja into commercial soybean cultivars. Theor Appl Genet. 2003;106:575–82.
CAS
PubMed
Google Scholar
Wang K, Liu Y, Dong K, Dong J, Kang J, Yang Q, et al. The effect of NaCl on proline metabolism in Saussurea amara seedlings. Afr J Biotech. 2011;10:2886–93.
CAS
Google Scholar
Sairam RK, Tyagi A. Physiology and molecular biology of salinity stress tolerance in plants. Curr Sci. 2004;86:407–21.
CAS
Google Scholar
Munns R, Tester M. Mechanisms of salinity tolerance. Annu Rev Plant Biol. 2008;59:651–81.
Article
CAS
PubMed
Google Scholar
Qiu QS, Guo Y, Dietrich MA, Schumaker KS, Zhu JK. Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3. Proc Natl Acad Sci U S A. 2002;99:8436–41.
Article
PubMed Central
CAS
PubMed
Google Scholar
Zhu JK. Regulation of ion homeostasis under salt stress. Curr Opin Plant Biol. 2003;6:441–5.
Article
CAS
PubMed
Google Scholar
Hasegawa PM, Bressan RA, Zhu JK, Bohnert HJ. Plant cellular and molecular responses to high salinity. Annu Rev Plant Physiol Plant Mol Biol. 2000;51:463–99.
Article
CAS
PubMed
Google Scholar
Delauney AJ, Verma DPS. A soybean gene encoding delta 1-pyrroline-5-carboxylate reductase was isolated by functional complementation in Escherichia coliandis found to be osmoregulated. Mol Gen Genet. 1990;221:299–305.
Article
CAS
PubMed
Google Scholar
Hu CAA, Delauney AJ, Verma DPS. A bifunctional enzyme (delta 1-pyrroline-5-carboxylate synthetase) catalyzes the first two steps in proline biosynthesis in plants. Proc Natl Acad Sci U S A. 1992;89:9354–8.
Article
PubMed Central
CAS
PubMed
Google Scholar
Armengaud P, Thiery L, Buhot N, Grenier-De MG, Savoure A. Transcriptional regulation of proline biosynthesis in Medicago truncatula reveals developmental and environmental specific features. Physiol Plant. 2004;120:442–50.
Article
CAS
PubMed
Google Scholar
de Bruxelles GL, Peacock WJ, Dennis ES, Dolferus R. Abscisic acid induces the alcohol dehydrogenase gene in Arabidopsis. Plant Physiol. 1996;111:381–91.
Article
PubMed Central
PubMed
Google Scholar
Xiong L, Lee B, Ishitani M, Lee H, Zhang C, Zhu JK. FIERY1 encoding an inositol polyphosphate 1-phosphatase is a negative regulator of abscisic acid and stress signaling in Arabidopsis. Genes Dev. 2001;15:1971–84.
Article
PubMed Central
CAS
PubMed
Google Scholar
Phang TH, Shao G, Lam HM. Salt tolerance in soybean. J Integr Plant Biol. 2008;50:1196–212.
Article
CAS
PubMed
Google Scholar
Li Y, Zheng L, Corke F, Smith C, Bevan MW. Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana. Genes Dev. 2008;22:1331–6.
Article
PubMed Central
CAS
PubMed
Google Scholar
Xia T, Li N, Dumenil J, Li J, Kamenski A, Bevan MW, et al. The ubiquitin receptor DA1 interacts with the E3 ubiquitin ligase DA2 to regulate seed and organ size in Arabidopsis. Plant Cell. 2013;25:3347–59.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bi D, Johnson KC, Zhu Z, Huang Y, Chen F, Zhang Y, et al. Mutations in an atypical TIR-NB-LRR-LIM resistance protein confer autoimmunity. Front Plant Sci. 2011;2:71.
Article
PubMed Central
PubMed
Google Scholar
Yang H, Shi Y, Liu J, Guo L, Zhang X, Yang S. A mutant CHS3 protein with TIR-NB-LRR-LIM domains modulates growth, cell death and freezing tolerance in a temperature-dependent manner in Arabidopsis. Plant J. 2010;63:283–96.
Article
CAS
PubMed
Google Scholar
Zhao M, He LL, Gu Y, Wang Y, Chen QS, He CY. Genome-wide analyses of a plant-specific LIM-domain gene family implicate its evolutionary role in plant diversification. Genome Biol Evol. 2014;6:1000–12.
Article
PubMed Central
CAS
PubMed
Google Scholar
Tuyen DD, Lal SK, Xu DH. Identification of a major QTL allele from wild soybean (Glycine soja Sieb. & Zucc.) for increasing alkaline salt tolerance in soybean. Theor Appl Genet. 2010;121:229–36.
Article
CAS
PubMed
Google Scholar
Koornneef M, Leon-Kloosterziel K, Schwartz SH, Zeevaart JAD. The genetic and molecular dissection of abscisic acid biosynthesis and signal transduction in Arabidopsis. Plant Physiol Biochem. 1998;36:83–9.
Article
CAS
Google Scholar
Leung J, Giraudat J. Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol. 1998;49:199–222.
Article
CAS
PubMed
Google Scholar
Apse MP, Aharon GS, Snedden WA, Blumwald E. Salt tolerance conferred by overexpression of a vacuolar Na+/H+ antiporter in Arabidopsis. Science. 1999;285:1256–8.
Article
CAS
PubMed
Google Scholar
Gao JP, Chao DY, Lin HX. Understanding abiotic stress tolerance mechanisms: recent studies on stress response in rice. J Integr Plant Biol. 2007;49:742–50.
Article
CAS
Google Scholar
Moller IS. Salinity tolerance of Arabidopsis: a good model for cereals? Trends Plant Sci. 2007;12:534–40.
Article
PubMed
Google Scholar
Du S, Liu Y, Yao B, Bai C, Miao X, Liu C, et al. Optimization of soybean transformation system and transferring Dof 4 gene into soybean. Soybean Sci. 2010;29:398–402.
Google Scholar
Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, et al. Gene duplication and paleopolyploid in soybean and the implications for whole genome sequencing. BMC Genomics. 2007;8:33.
Article
Google Scholar
Liao Y, Zou HF, Wang HW, Zhang WK, Ma B, Zhang JS, et al. Soybean GmMYB76, GmMYB92 and GmMYB177 genes confer stress tolerance in transgenic Arabidopsis plants. Cell Res. 2008;18:1047–60.
Article
CAS
PubMed
Google Scholar
Hao YJ, Wei W, Song QX, Chen HW, Zhang YQ, Wang F, et al. Soybean NAC transcription factors promote abiotic stress tolerance and lateral root formation in transgenic plants. Plant J. 2011;68:302–13.
Article
CAS
PubMed
Google Scholar
Doust A, Lukens L, Olsen KM, Mauro-Herrera M, Meyer A, Rogers K. Beyond the single gene: How epistasis and gene-by-environment effects influence crop domestication. Proc Natl Acad Sci U S A. 2013;111:6178–83.
Article
Google Scholar
Tian Z, Wang X, Lee R, Li Y, Specht JE, Nelson RL, et al. Artificial selection for determinate growth habit in soybean. Proc Natl Acad Sci U S A. 2010;107:8563–8.
Article
PubMed Central
CAS
PubMed
Google Scholar
Cong B, Barrero LS, Tanksley SD. Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nat Genet. 2008;40:800–4.
Article
CAS
PubMed
Google Scholar
Lin Z, Li X, Shannon LM, Yeh C-T, Wang ML, Bai G, et al. Parallel domestication of the Shattering1 genes in cereals. Nat Genet. 2012;44:720–4.
Article
PubMed Central
CAS
PubMed
Google Scholar
Blackman BK, Strasburg JL, Raduski AR, Michaels SD, Rieseberg LH. The role of recently derived FT paralogs in sunflower domestication. Curr Biol. 2010;20:629–35.
Article
PubMed Central
CAS
PubMed
Google Scholar
Olsen KM, Wendel JF. A bountiful harvest: genomic insights into crop domestication phenotypes. Annu Rev Plant Biol. 2013;64:47–70.
Article
CAS
PubMed
Google Scholar
Livak KJ, Schmittgen TD. Analysis of relative gene expression data using real-time quantitative PCR and the 2-ΔΔCt method. Methods. 2001;25:402–8.
Article
CAS
PubMed
Google Scholar
Clough SJ, Bent AF. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 1998;16:735–43.
Article
CAS
PubMed
Google Scholar
MacKinney G. Absorption of light by chlorophyll solutions. J Biol Chem. 1941;140:315–22.
CAS
Google Scholar
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011;28:2731–9.
Article
PubMed Central
CAS
PubMed
Google Scholar
Page RD. TreeView: An application to display phylogenetic trees on personal computers. CABIOS. 1996;12:357–8.
CAS
PubMed
Google Scholar
Choi Y, Sims GE, Murphy S, Miller JR, Chan AP. Predicting the Functional Effect of Amino Acid Substitutions and Indels. PLoS One. 2012;7:e46688.
Article
PubMed Central
CAS
PubMed
Google Scholar
Bromberg Y, Rost B. SNAP: predict effect of non-synonymous polymorphisms on function. Nucleic Acids Res. 2007;35:3823–35.
Article
PubMed Central
CAS
PubMed
Google Scholar