The International Peach Genome Initiative: The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet. 2013, 45: 487-494. 10.1038/ng.2586.
Article
Google Scholar
Feild TS, Lee DW, Holbrook NM: Why leaves turn red in autumn. The role of anthocyanins in senescing leaves of red-osier dogwood. Plant Physiol. 2001, 127: 566-574. 10.1104/pp.010063.
Article
PubMed Central
CAS
PubMed
Google Scholar
Koes R, Verweij W, Quattrocchio F: Flavonoids: a colorful model for the regulation and evolution of biochemical pathways. Trends Plant Sci. 2005, 10: 236-242. 10.1016/j.tplants.2005.03.002.
Article
CAS
PubMed
Google Scholar
Tanaka Y, Sasaki N, Ohmiya A: Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids. Plant J. 2008, 54: 733-749. 10.1111/j.1365-313X.2008.03447.x.
Article
CAS
PubMed
Google Scholar
Grotewold E: The genetics and biochemistry of floral pigments. Annu Rev Plant Biol. 2006, 57: 761-780. 10.1146/annurev.arplant.57.032905.105248.
Article
CAS
PubMed
Google Scholar
Zafra-Stone S, Yasmin T, Bagchi M, Chatterjee A, Vinson JA, Bagchi D: Berry anthocyanins as novel antioxidants in human health and disease prevention. Mol Nutr Food Res. 2007, 51: 675-683. 10.1002/mnfr.200700002.
Article
CAS
PubMed
Google Scholar
Broun P: Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Cur Opin Plant Biol. 2005, 8: 8-10.1016/j.pbi.2005.03.006.
Article
Google Scholar
Winkel-Shirley B: Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology. Plant Physiol. 2001, 126: 485-493. 10.1104/pp.126.2.485.
Article
PubMed Central
CAS
PubMed
Google Scholar
Walker AR, Lee E, Bogs J, McDavid DA, Thomas MR, Robinson SP: White grapes arose through the mutation of two similar and adjacent regulatory genes. Plant J. 2007, 49: 772-785. 10.1111/j.1365-313X.2006.02997.x.
Article
CAS
PubMed
Google Scholar
Takos AM, Jaffe FW, Jacob SR, Bogs J, Robinson SP, Walker AR: Light-induced expression of a MYB gene regulates anthocyanin biosynthesis in red apples. Plant Physiol. 2006, 142: 1216-1232. 10.1104/pp.106.088104.
Article
PubMed Central
CAS
PubMed
Google Scholar
Ban Y, Honda C, Hatsuyama Y, Igarashi M, Bessho H, Moriguchi T: Isolation and functional analysis of a MYB transcription factor gene that is a key regulator for the development of red coloration in apple skin. Plant Cell Physiol. 2007, 48: 958-970. 10.1093/pcp/pcm066.
Article
CAS
PubMed
Google Scholar
Espley RV, Hellens RP, Putterill J, Stevenson DE, Kutty-Amma S, Allan AC: Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10. Plant J. 2007, 49: 414-427. 10.1111/j.1365-313X.2006.02964.x.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lin-Wang K, Bolitho K, Grafton K, Kortstee A, Karunairetnam S, McGhie TK, Espley RV, Hellens RP, Allan AC: An R2R3 MYB transcription factor associated with regulation of the anthocyanin biosynthetic pathway in Rosaceae. BMC Plant Biol. 2010, 10: 50-10.1186/1471-2229-10-50.
Article
PubMed Central
PubMed
Google Scholar
Butelli E, Licciardello C, Zhang Y, Liu J, Mackay S, Bailey P, Reforgiato-Recupero G, Martin C: Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges. Plant Cell. 2012, 24: 1242-1255. 10.1105/tpc.111.095232.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hoch WA, Zeldin EL, McCown BH: Physiological significance of anthocyanins during autumnal leaf senescence. Tree Physiol. 2001, 21: 1-8. 10.1093/treephys/21.1.1.
Article
CAS
PubMed
Google Scholar
Blake MA: Progress in peach breeding. Proc Am Soc Hortic Sci. 1937, 35: 49-53.
Google Scholar
Lambert P, Pascal T: Mapping Rm2 gene conferring resistance to the green peach aphid (Myzus persicae Sulzer) in the peach cultivar “Rubira®”. Tree Genet Genomes. 2011, 7: 1057-1068. 10.1007/s11295-011-0394-2.
Article
Google Scholar
Ravaglia D, Espley RV, Henry-Kirk RA, Andreotti C, Ziosi V, Hellens RP, Costa G, Allan AC: Transcriptional regulation of flavonoid biosynthesis in nectarine (Prunus persica) by a set of R2R3 MYB transcription factors. BMC Plant Biol. 2013, 13: 68-10.1186/1471-2229-13-68.
Article
PubMed Central
CAS
PubMed
Google Scholar
Uematsu C, Katayama H, Makino I, Inagaki A, Arakawa O, Martin C: Peace, a MYB-like transcription factor, regulates petal pigmentation in flowering peach ‘Genpei’ bearing variegated and fully pigmented flowers. J Exp Bot. 2014, 65: 1081-1094. 10.1093/jxb/ert456.
Article
PubMed Central
CAS
PubMed
Google Scholar
Rahim MA, Busatto N, Trainotti L: Regulation of anthocyanin biosynthesis in peach fruits. Planta. 2014, 240: 913-929. 10.1007/s00425-014-2078-2.
Article
CAS
PubMed
Google Scholar
Zhou Y, Guo D, Li J, Cheng J, Zhou H, Gu C, Gardiner S, Han Y: Coordinated regulation of anthocyanin biosynthesis through photorespiration and temperature in peach (Prunus persica f. atropurpurea). Tree Genet Genomes. 2012, 9: 265-278. 10.1007/s11295-012-0552-1.
Article
Google Scholar
Leng P, Itamura H, Yamamura H, Deng XM: Anthocyanin accumulation in apple and peach shoots during cold acclimation. Sci Hortic. 1999, 83: 43-50. 10.1016/S0304-4238(99)00065-5.
Article
Google Scholar
Cheng J, Wei G, Zhou H, Gu C, Vimolmangkang S, Liao L, Han Y: Unraveling the mechanism underlying the glycosylation and methylation of anthocyanins in peach. Plant Physiol. 2014, 166: 1044-1058. 10.1104/pp.114.246876.
Article
PubMed Central
PubMed
Google Scholar
Breathnach R, Chambon P: Organization and expression of eukaryotic split genes coding for proteins. Annu Rev Biochem. 1981, 50: 349-383. 10.1146/annurev.bi.50.070181.002025.
Article
CAS
PubMed
Google Scholar
Chagné D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, Brendolise C, Carlisle CM, Kumar S, De Silva N, Micheletti D, McGhie T, Crowhurst RN, Storey RD, Velasco R, Hellens RP, Gardiner SE, Allan AC: An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. Plant Physiol. 2013, 161: 225-239. 10.1104/pp.112.206771.
Article
PubMed Central
PubMed
Google Scholar
Feng S, Wang Y, Yang S, Xu Y, Chen X: Anthocyanin biosynthesis in pears is regulated by a R2R3-MYB transcription factor PyMYB10 . Planta. 2010, 232: 245-255. 10.1007/s00425-010-1170-5.
Article
CAS
PubMed
Google Scholar
Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G, Xing Z, Han C, Pan H, Zhong X, Shi W, Liang X, Du D, Sun F, Xu Z, Hao R, Lv T, Lv Y, Zheng Z, Sun M, Luo L, Cai M, Gao Y, Wang J, Yin Y, Xu X, et al: The genome of Prunus mume . Nat Commun. 2012, 3: 1318-10.1038/ncomms2290.
Article
PubMed Central
PubMed
Google Scholar
Espley RV, Brendolise C, Chagné D, Kutty-Amma S, Green S, Volz R, Putterill J, Schouten HJ, Gardiner SE, Hellens RP, Allan AC: Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples. Plant Cell. 2009, 21: 168-183. 10.1105/tpc.108.059329.
Article
PubMed Central
CAS
PubMed
Google Scholar
Higo K, Ugawa Y, Iwamoto M, Korenaga T: Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucle Acids Res. 1999, 27: 297-300. 10.1093/nar/27.1.297.
Article
CAS
Google Scholar
Matsui K, Umemura Y, Ohme-Takagi M: AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis . Plant J. 2008, 55: 954-967. 10.1111/j.1365-313X.2008.03565.x.
Article
CAS
PubMed
Google Scholar
Quattrocchio F, Wing JF, Leppen H, Mol J, Koes RE: Regulatory genes controlling anthocyanin pigmentation are functionally conserved among plant species and have distinct sets of target genes. Plant Cell. 1993, 5: 1497-1512. 10.1105/tpc.5.11.1497.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L: MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana. Plant J. 2008, 55: 940-953. 10.1111/j.1365-313X.2008.03564.x.
Article
CAS
PubMed
Google Scholar
Gonzalez A, Zhao M, Leavitt JM, Lloyd AM: Regulation of the anthocyanin biosynthetic pathway by the TTG1/bHLH/Myb transcriptional complex in Arabidopsis seedlings. Plant J. 2008, 53: 814-827. 10.1111/j.1365-313X.2007.03373.x.
Article
CAS
PubMed
Google Scholar
Chiu LW, Zhou X, Burke S, Wu X, Prior RL, Li L: The purple cauliflower arises from activation of a MYB transcription factor. Plant Physiol. 2010, 154: 470-1480.
Google Scholar
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, et al: The genome of woodland strawberry (Fragaria vesca). Nat Genet. 2011, 43: 109-116. 10.1038/ng.740.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jung S, Cestaro A, Troggio M, Main D, Zheng P, Cho I, Folta KM, Sosinski B, Abbott A, Celton JM, Arús P, Shulaev V, Verde I, Morgante M, Rokhsar D, Velasco R, Sargent DJ: Whole genome comparisons of Fragaria Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies. BMC Genomics. 2012, 13: 129-10.1186/1471-2164-13-129.
Article
PubMed Central
CAS
PubMed
Google Scholar
Benedict JC, DeVore ML, Pigg KB: Prunus and Oemleria (Rosaceae) flowers from the Late Early Eocene Republic Flora of Northeastern Washington State, USA. Int J Plant Sci. 2011, 172: 948-958. 10.1086/660880.
Article
Google Scholar
Wang L, Zhao S, Gu C, Zhou Y, Zhou H, Ma J, Cheng J, Han Y: Deep RNA-Seq uncovers the peach transcriptome landscape. Plant Mol Biol. 2013, 83: 365-377. 10.1007/s11103-013-0093-5.
Article
CAS
PubMed
Google Scholar
Luo QJ, Mittal A, Jia F, Rock CD: An autoregulatory feedback loop involving PAP1 and TAS4 in response to sugars in Arabidopsis . Plant Mol Biol. 2012, 80: 117-129. 10.1007/s11103-011-9778-9.
Article
PubMed Central
CAS
PubMed
Google Scholar
Jáuregui B, de Vicente MC, Messeguer R, Felipe A, Bonnet A, Salesses G, Arús P: A reciprocal translocation between ‘Garfi’ almond and ‘Nemared’ peach. Theor Appl Genet. 2001, 102: 1169-1176. 10.1007/s001220000511.
Article
Google Scholar
Yamamoto T, Yamaguchi M, Hayashi T: An integrated genetic linkage map of peach by SSR, STS, AFLP and RAPD. J Jpn Soc Hort Sci. 2005, 74: 204-213. 10.2503/jjshs.74.204.
Article
CAS
Google Scholar
Leyva A, Jarillo JA, Salinas J, Martinez-Zapater JM: Low temperature induces the accumulation of phenylalanine ammonia-lyase and chalcone synthase mRNAs of Arabidopsis thaliana in a light-dependent manner. Plant Physiol. 1995, 108: 39-46.
PubMed Central
CAS
PubMed
Google Scholar
Lin-Wang K, Micheletti D, Palmer J, Volz R, Lozano L, Espley R, Hellens RP, Chagnè D, Rowan DD, Troggio M, Iglesias I, Allan AC: High temperature reduces apple fruit colour via modulation of the anthocyanin regulatory complex. Plant Cell Environ. 2011, 34: 1176-1190. 10.1111/j.1365-3040.2011.02316.x.
Article
PubMed
Google Scholar
Mori K, Goto-Yamamoto N, Kitayama M, Hashizume K: Loss of anthocyanins in red-wine grape under high temperature. J Exp Bot. 2007, 58: 1935-1945. 10.1093/jxb/erm055.
Article
CAS
PubMed
Google Scholar
Takada K, Ishimaru K, Minamisawa K, Kamada H, Ezura H: Expression of a mutated melon ethylene receptor gene Cm-ETR1/H69A affects stamen development in Nicotiana tabacum . Plant Sci. 2005, 169: 935-942. 10.1016/j.plantsci.2005.06.012.
Article
CAS
Google Scholar
Li Y, Mao K, Zhao C, Zhao X, Zhang H, Shu H, Hao Y: MdCOP1 ubiquitin E3 ligases interact with MdMYB1 to regulate light-induced anthocyanin biosynthesis and red fruit coloration in apple. Plant Physiol. 2012, 160: 1011-1022. 10.1104/pp.112.199703.
Article
PubMed Central
CAS
PubMed
Google Scholar
Romero I, Teresa Sanchez-Ballesta M, Maldonado R, Isabel Escribano M, Merodio C: Anthocyanin, antioxidant activity and stress-induced gene expression in high CO2-treated table grapes stored at low temperature. J Plant Physiol. 2008, 165: 522-530. 10.1016/j.jplph.2006.12.011.
Article
CAS
PubMed
Google Scholar
Cheng J, Khan MA, Qiu WM, Li J, Zhou H, Zhang Q, Guo W, Zhu T, Peng J, Sun F, Li S, Korban SS, Han Y: Diversification of genes encoding granule-bound starch synthase in monocots and dicots is marked by multiple genome-wide duplication events. PLoS One. 2012, 7: e30088-10.1371/journal.pone.0030088.
Article
PubMed Central
CAS
PubMed
Google Scholar
Drummond AJ, Rambaut A: BEAST: bayesian evolutionary analysis sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed Central
PubMed
Google Scholar
Hasegawa M, Kishino H, Yano T: Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol. 1985, 22: 160-174. 10.1007/BF02101694.
Article
CAS
PubMed
Google Scholar
Hellens RP, Allan AC, Friel EN, Bolitho K, Grafton K, Templeton MD, Karunairetnam S, Gleave AP, Laing WA: Transient expression vectors for functional genomics, quantification of promoter activity and RNA silencing in plants. Plant Methods. 2005, 1: 13-10.1186/1746-4811-1-13.
Article
PubMed Central
PubMed
Google Scholar
Wang C, Zeng J, Li Y, Hu W, Chen L, Miao Y, Deng P, Yuan C, Ma C, Chen X, Zang M, Wang Q, Li K, Chang J, Wang Y, Yang G, He G: Enrichment of provitamin A content in wheat (Triticumaestivum L.) by introduction of the bacterial carotenoid biosynthetic genes CrtB and CrtI. J Exp Bot. 2014, 65: 2545-2556. 10.1093/jxb/eru138.
Article
PubMed Central
CAS
PubMed
Google Scholar