Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, Tang Y, Weng Q, Zhang L, Lu Y, Mu J, Lu Y, Zhang LS, Yu Z, Fan D, Liu X, Lu T, Li C, Wu Y, Sun T, Lei H, Li T, Hu H, Guan J, Wu M, Zhang R, Zhou B, Chen Z, Chen L, Jin Z, Wang R, Yin H, Cai Z, Ren S, Lv G, Gu W, Zhu G, Tu Y, Jia J, Zhang Y, Chen J, Kang H, Chen X, Shao C, Sun Y, Hu Q, Zhang X, Zhang W, Wang L, Ding C, Sheng H, Gu J, Chen S, Ni L, Zhu F, Chen W, Lan L, Lai Y, Cheng Z, Gu M, Jiang J, Li J, Hong G, Xue Y, Han B: Sequence and analysis of rice chromosome 4. Nature. 2002, 420: 316-320. 10.1038/nature01183.
Article
PubMed
CAS
Google Scholar
Han B, Xue Y: Genome-wide intraspecific DNA-sequence variations in rice. Curr Opin Plant Biol. 2003, 6: 134-138. 10.1016/S1369-5266(03)00004-9.
Article
PubMed
CAS
Google Scholar
International Rice Genome Sequencing Profect (IRGSP): The map-based sequence of the rice genome. Nature. 2005, 436: 793-800. 10.1038/nature03895.
Article
Google Scholar
The Rice Full-length cDNA Consortium: Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science. 2003, 301: 376-379. 10.1126/science.1081288.
Article
Google Scholar
Xie K, Zhang J, Xiang Y, Feng Q, Han B, Chu Z, Wang S, Zhang Q, Xiong L: Isolation and annotation of 10828 putative full length cDNAs from indica rice. Sci China C Life Sci. 2005, 48: 445-451. 10.1360/062004-90.
Article
PubMed
CAS
Google Scholar
Zhang J, Feng Q, Jin C, Qiu D, Zhang L, Xie K, Yuan D, Han B, Zhang Q, Wang S: Features of the expressed sequences revealed by a large-scale analysis of ESTs from a normalized cDNA library of the elite indica rice cultivar Minghui 63. Plant J. 2005, 42: 772-780. 10.1111/j.1365-313X.2005.02408.x.
Article
PubMed
CAS
Google Scholar
Liu X, Lu T, Yu S, Li Y, Huang Y, Huang T, Zhang L, Zhu J, Zhao Q, Fan D, Mu J, Shangguan Y, Feng Q, Guan J, Ying K, Zhang Y, Lin Z, Sun Z, Qian Q, Lu Y, Han B: A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies. Plant Mol Biol. 2007, 65: 403-415. 10.1007/s11103-007-9174-7.
Article
PubMed
CAS
Google Scholar
Lin S, Min S: Rice varieties and their genealogy in China. 1991, Shanghai: Shanghai Scientific and Technical Press
Google Scholar
Monna L, Ohta R, Masuda H, Koike A, Minobe Y: Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.). DNA Res. 2006, 13: 43-51. 10.1093/dnares/dsi030.
Article
PubMed
CAS
Google Scholar
IRGSP Releases Build 4.0 Pseudomolecules of the Rice Genome. [http://rgp.dna.affrc.go.jp/E/IRGSP/Build4/build4.html]
Wu TD, Watanabe CK: GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics. 2005, 21: 1859-1875. 10.1093/bioinformatics/bti310.
Article
PubMed
CAS
Google Scholar
Rice Annotation Project: The rice annotation project database (RAP-DB): 2008 update. Nucleic Acids Res. 2008, 36: D1028-D1033. 10.1093/nar/gkm978.
Article
PubMed Central
Google Scholar
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR: The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res. 2007, 35: D883-D887. 10.1093/nar/gkl976.
Article
PubMed
CAS
PubMed Central
Google Scholar
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25: 3389-3402. 10.1093/nar/25.17.3389.
Article
PubMed
CAS
PubMed Central
Google Scholar
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A: The Pfam protein families database. Nucleic Acids Res. 2008, 36: D281-D288. 10.1093/nar/gkm960.
Article
PubMed
CAS
PubMed Central
Google Scholar
Web address of RiceGE. [http://signal.salk.edu/cgi-bin/RiceGE]
Liang C, Jaiswal P, Hebbard C, Avraham S, Buckler ES, Casstevens T, Hurwitz B, McCouch S, Ni J, Pujar A, Ravenscroft D, Ren L, Spooner W, Tecle I, Thomason J, Tung CW, Wei X, Yap I, Youens-Clark K, Ware D, Stein L: Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 2008, 36: D947-D953. 10.1093/nar/gkm968.
Article
PubMed
CAS
PubMed Central
Google Scholar