SUMO E3 ligase AtMMS21 is required for normal meiosis and gametophyte development in Arabidopsis
- Ming Liu†1, 2,
- Songfeng Shi†1,
- Shengchun Zhang†1,
- Panglian Xu†1,
- Jianbin Lai1,
- Yiyang Liu1,
- Dongke Yuan1,
- Yaqin Wang1,
- Jinju Du1 and
- Chengwei Yang1Email author
© Liu et al.; licensee BioMed Central Ltd. 2014
Received: 1 December 2013
Accepted: 28 May 2014
Published: 3 June 2014
MMS21 is a SUMO E3 ligase that is conserved in eukaryotes, and has previously been shown to be required for DNA repair and maintenance of chromosome integrity. Loss of the Arabidopsis MMS21 causes defective meristems and dwarf phenotypes.
Here, we show a role for AtMMS21 during gametophyte development. AtMMS21 deficient plants are semisterile with shorter mature siliques and abortive seeds. The mms21-1 mutant shows reduced pollen number, and viability, and germination and abnormal pollen tube growth. Embryo sac development is also compromised in the mutant. During meiosis, chromosome mis-segregation and fragmentation is observed, and the products of meiosis are frequently dyads or irregular tetrads. Several transcripts for meiotic genes related to chromosome maintenance and behavior are altered. Moreover, accumulation of SUMO-protein conjugates in the mms21-1 pollen grains is distinct from that in wild-type.
Thus, these results suggest that AtMMS21 mediated SUMOylation may stabilize the expression and accumulation of meiotic proteins and affect gametophyte development.
The life cycle of flowering plants alternates between a prominent diploid sporophyte generation and a short-lived haploid gametophyte generation. The haploid gametophytes are derived from the haploid spores that are produced by diploid megasporocytes (female) and microsporocyte (male)parent cells . During female gametophyte development, the megasporocyte undergoes meiosis to produce a tetrad of four haploid spores. Three of the spores degenerate, and one proceeds through three sequential rounds of mitotic division, forming the female gametophyte (embryo sac), which consists of seven cells with four cell types . During male gametophyte development, microsporocytes undergo meiosis to form a tetrad of four haploid microspores. Each microspore undergoes two mitotic divisions to form the male gametophyte (pollen grain) consisting of a vegetative cell and two sperm cells . Following pollination, the pollen grain lands on the pistil and extends a pollen tube that allows the delivery of the two sperm cells into the female gametophyte, and then gives rise to the diploid zygote to begin the sporophytic generation . Female and male gametophyte development differ considerably, but at the same time share the same fundamental hallmark of being haploid organs: it is therefore logical that they might require the same basal machinery and share a number of common regulators .
Meiosis is a specialized cellular division that is conserved among most eukaryotes. This process is indispensable for formation of viable offspring. It consists of two rounds of chromosome segregation after a single round of DNA replication, giving rise to four haploid daughter cells. During meiosis I homologous chromosomes pair, undergo recombination and then segregate, whereas sister chromatids separate during meiosis II . Recombination is initiated by the formation of SPO11-induced DNA double strand-breaks (DSBs), and DSBs in meiosis are repaired by homologous recombination . Disruption of meiotic homologous recombination could result in chromosome anomalies, which could lead to mis-segregation and aneuploidy .
The faithful transmission of chromosomes during meiosis is essential for the survival and reproduction of flowering plants. A critical aspect of chromosome dynamics is structural maintenance of chromosome (SMC) proteins, which are responsible for sister chromatid cohesion, chromosome condensation and homologous recombination (HR) during meiosis [9, 10]. The evolutionarily conserved SMC gene family encodes members of the three complexes: the cohesin, the condensin and the SMC5/6 complex. In Arabidopsis, the cohesin complex consists of the SMC1, SMC3, SCC3, and four α-kleisin subunits: SYN1, SYN2, SYN3 and SYN4 . Evidence from mutants (smc1, smc3, scc3, syn1, syn3) defective in meiosis have shown that cohesin is essential for the control of chromosome structure and many subsequent meiotic events [11–15]. The arabidopsis condensin complex consists of the SMC2, SMC4, and β-kleisin subunit CAP-D2. Data from mutants (smc2, smc4) with gametophytic defects have shown that condensin is required for chromosome condensation and segregation during mitosis, meiosis and embryo development [16–18]. In plants, knowledge about the role of SMC5/6 complex is still limited. The arabidopsis SMC5/6 complex presumably consists of SMC5, one of two alternative SMC6 proteins and four NSE(non-SMC elements) proteins (NSE1-4) . It has been shown in Arabidopsis that SMC5 and SMC6 enhances sister chromatid alignment after DNA damage and thereby facilitates correct DSB repair via HR between sister chromatids . Although the arabidopsis NSE1 and SMC5 are essential for seed development [19, 20], the role SMC5/6 complex in gametophyte development is still unknown.
The Arabidopsis SUMO E3 ligase AtMMS21/HPY2, a homologue of NSE2/MMS21, has been identified recently as participating in root development. Loss of AtMMS21/HPY2 function results in premature mitotic-to-endocycle transition, defective cytokinin signaling, and impaired cell cycle, leading to severe dwarfism with compromised meristems [21–23]. Recent data demonstrate that AtMMS21/HPY2 functions as a subunit of the SMC5/6 complex through its interaction with SMC5. AtMMS21 acts in DSB amelioration and stem cell niche maintenance during root development . Hence, AtMMS21 is involved in cell division, differentiation, expansion and survival during plant development. The highly coordinated processes of cell division, differentiation, and expansion that take place during gametophyte development require precise fine-tuning of gene regulatory networks . However, whether and how AtMMS21 participates in regulating the gametophyte development and reproductive processes remains unclear.
In the present study, we provide cell-biological and molecular evidence that AtMMS21 is required for fertility in Arabidopsis. Mutations in AtMMS21 cause semi-sterility with aberrant gamete, indicating that the gene is essential for gametogenesis. Furthermore, mms21-1 mutant cells exhibit chromosome fragmentation and mis-segregation during meiosis. Transcription level for several meiotic genes are also altered in mms21-1 buds. These observations suggest that AtMMS21 plays an important role in meiosis and gametophyte development.
mms21-1mutant shows severely reduced fertility
Decreased fertility in mms21-1is caused by both abnormal male and female fertility
Cross-pollination of wild-type pollen onto mms21-1 pistils resulted in better fertilization and silique sizes (Figure 2C). However, the siliques size and seed number per silique were still decreased in this cross, compared with the wild-type self-cross (Figure 2E, F). Cross-pollination of mms21-1 pollen onto wild-type pistil showed a lower percentage in pollen tube growth to the base of the pistil (Figure 2H). Taken together, our reciprocal cross-pollination studies suggested that AtMMS21 has a function in both male and female fertility.
mms21-1mutant shows reduced pollen number, viability, germination and abnormal pollen tube growth
Mutation of AtMMS21causes defects in gametogenesis
To more precisely define the developmental defect in mms21-1 pollen, developing mms21-1 pollen were stained with DAPI and observed at different developmental stages. The mms21-1 meiotic products were a mixture of dyads, triads and tetrads, while the WT tetrads had four equal-sized spores enclosed in a callose wall (Figure 4K, O). At the uninucleate stage, some abnormal microspores in mms21-1 exhibited no fluorescence or contained two nuclei within one exine wall (Figure 4P). In the bicellular pollen stage, some of the mms21-1 pollen became shrunken and lacked DAPI staining compared with wild-type (Figure 4M, Q). The size difference became more pronounced at the tricellular stage, as normal pollen continued to approach maturity, while mutants were losing nuclear content and becoming distorted (Figure 4R). We also examined expression patten of AtMMS21 by in situ hybridization. Transverse sections of anthers showed strong hybridization signals in pollen mother cells (PMCs; Figure 4S); no signals were detected when a sense probe was used (Figure 4T). Loss of AtMMS21 function also causes defects in female gametogenesis. Normally the diploid megaspore mother cell undergoes meiosis and gives rise to four haploid nuclei. Subsequently, three megaspores undergo cell death, with the remaining, functional megaspore proceeding into megagametogenesis. Examination of cleared ovules in mms21-1 mutant plants showed that some megaspore mother cells appeared to abort either before or during meiosis , giving rise to embryo sacs containing one to five nuclei (Additional file 3: Figure S3). These data indicated that AtMMS21 is important for gametogenesis, both during male and female gametophyte development.
Disruption of AtMMS21leads to defects in chromosome behavior during meiosis
mms21-1mutants exhibits altered transcript levels for meiotic genes
mms21-1mutant exhibits reduced SUMOylation levels in pollen grains
SUMOylation and the components of the SUMO conjugation machinery are essential for viability, as shown by the embryo lethality of the mutations in SAE2 or SCE or both in SUMO1 and SUMO2 . However, the role of SUMOylation for gametophyte development is poorly understood because of the zygotic lethality. Here, we used a viable mutant without functional SUMO E3 ligase AtMMS21 for studying the function of SUMOylation in reproductive development. First, we examined T-DNA mutants of AtMMS21 , focusing on silique size and seed set, which are direct indicators of successful fertility. The mms21-1 mutant exhibits a drastic reduction in fertility, embodied by a shorter silique length with a smaller seed set than those in the wild-type (Figure 1). Examination of the male fertility indicated that mutant anthers produce fewer functional pollen grains (Figure 3). Cytological observation of various developmental stages in mms21-1 pollen revealed that the products of meiosis in the mutant were mostly dyads of spores instead of tetrads (Figure 4). Similarly, mutant meiosis produced abnormal embryo sacs during female gametogenesis (Figure 2). These results are consistent with our reciprocal cross study suggesting that AtMMS21 has crucial roles in both male and female gametogenesis.
Gametogenesis is an essential process for plant reproduction and the roles of the ubiquitin system in different processes during gametogenesis have been studied extensively . However, although ubiquitin-like proteins SUMO have emerged as a key regulator of plant development and stress response , there are currently little data supporting a specific role of the SUMO system in the control of reproduction. Our data presented a regulatory framework for the action of AtMMS21-dependent SUMOylation in reproductive development. The loss of function mutant mms21-1 is still viable probably due to the action of another SUMO E3 ligase SIZ1 . The siz1-2 and mms21/hpy2 double mutant results in embryonic lethality, supporting the notion that AtMMS21 and SIZ1 have overlapping functions . Mature female gametophytes were rapidly disrupted in the absence of the SIZ1 protein, while pollen developed well, indicating that SIZ1 plays important roles in sustaining the stability of the mature female gametophyte . However, unlike the SIZ1, AtMMS21 is involved in the development and the female and male gametophyte. Interestingly, AtMMS21 was recently shown to be expressed highly in reproductive organs such as anther using a GUS reporter construct . The expression data supported the role of AtMMS21 during gametophyte development inferred from the mms21-1 mutant lines. The severe defects in mms21-1 gametophyte indicated that AtMMS21 is vital for fundamental processes (e.g. meiosis), thereby ensuring normal reproductive development in Arabidopsis.
The precise transmission of chromosomes from mother to daughter cells is a highly controlled process that requires members of the SMC (structural maintenance of chromosome) protein family. Although cohesin (SMC1/3) and condensin (SMC2/4) complexes have been reported to be involved in many aspects of meiosis, the role of the SMC5/6 complex in meiosis remains elusive. Here, we demonstrated that a SMC5/6 subunit, AtMMS21, is essential during Arabidopsis gametogenesis. The lack of AtMMS21 resulted in severely disrupted meiosis with bridges between chromosomes and chromosome fragmentations during meiosis I, leading to the unequal distribution of meiotic products and polyad formation during meiosis II (Figure 5). AtMMS21 is an important regulator of cell cycle progression [23, 24]. It is possible that the dyad cells may result from delayed progression of meiosis. During meiosis, a germ cell will purposely create double-strand breaks which is induced by the protein SPO11 to promote chiasmata formation, and the programmed DSBs which are repaired by HR . If the DSBs remain unrepaired while the cell cycle continues, it will possibly lead to fragmentation and mis-segregation . Recent study demonstrated that AtMMS21, a SMC5/6 complex sub-unit, is involved in DSB repair . Chromosome fragmentation and mis-segregation observed in meiosis of mms21-1 may due to defective DSB repair. The chromosome fragmentation may result from failure of DSB repair or non-condensed entangled chromosomes pulled to break by the spindle. This notion is consistent with previous finding that the yeast SMC5/6 complex is required to ensure proper chromosome behavior during meiosis [45, 46]. In addition, several genes associated with DSB accumulation or formation, such as RAD51 RAD51C and SPO11-1 were increased in mms21-1 flower buds (Figure 6A), suggesting that mms21-1 generative cells may contain unrepaired DSBs. Therefore, it will be interesting to examine whether AtMMS21 is recruited to mitotic DSBs and function in meiotic recombination during meiosis. Although the meiotic functions of AtMMS21 need to be investigated, our data demonstrated that AtMMS21 is required for proper chromosome behavior and successful meiotic divisions.
Meiotic roles have been discovered for cohesins and condensins in plants . Here we show that a SMC5/6 associated protein AtMMS21 is important for meiosis. Furthermore, several genes encode various components of the different SMC complexes in mms21-1 plants display increased transcription level (Figure 7B). SMC complexes and their associated proteins are essential for sister chromatid cohesion, chromosome condensation, DNA repair and recombination. It is tempting to speculate that AtMMS21 gene may affect meiotic process indirectly by altering the expression of SMC complexes and their associated genes. When exposured to DNA damaging agents all subunits of cohesin become SUMOylated, such as the SUMOylation of SCC1 is carried out by the SUMO E3 ligase MMS21 in yeast . Therefore, further analysis of the protein expression of SMC complexes in the mms21-1 meiocytes and the relation between AtMMS21 and cohesin/condensin complexes will help to clarify the precise function of AtMMS21 during meiosis. At the protein level, our results demonstrated that SUMOylation level in mms21-1 pollen grains proteins is different from the wild-type (Figure 7), indicating that AtMMS21-mediated SUMOylation may participate in generative cell formation. Identification and functional analyses of sumoylated proteins related to AtMMS21 are necessary for the understanding how AtMMS21-dependent SUMOylation participates in meiosis and gametophyte development.
In conclusion, our studies found that Arabidopsis MMS21 is important for gametogenesis, both during male and female gametophyte development. The loss of the Arabidopsis MMS21 causes reduced pollen number, viability, germination and abnormal meiotic chromosome behavior. Several transcripts for meiotic genes related to chromosome maintenance and behavior are altered in the mms21-1 plant. Futhermore, SUMO-protein conjugates in the mms21-1 pollen grains are different from those in wild-type. Thus, these results indicated that AtMMS21 mediated SUMOylation may stabilize the expression and accumulation of meiotic proteins in the gametophyte development.
Plant materials and growth conditions
The mms21-1 mutant and 35S:AtMMS21 Arabidopsis (Arabidopsis thaliana; Columbia-0 ecotype) were isolated as described previously . Arabidopsis plants were grown in a controlled growth room at 22 ± 2°C under long-day conditions (16-h light/8-h dark). For in vitro experiments, seeds were surface-sterilized for 2 min in 75% ethanol, followed by 5 min in 1% NaClO solution and washed five times in sterile distilled water, plated on growth medium (MS medium, 1.5% sucrose and 0.8% agar), vernalized at 4°C for 2 days in the dark and then exposed to white light.
In vitro pollen tube growth assay
Plants were removed from the growth chamber for 2 h before pollen was removed from flowers. Pollen was grown on solid germination medium (0.01% boric acid, 5 mM CaCl2, 5 mM KCl,1 mM MgSO4, 10% sucrose pH 7.5, 1.5% low-melting agarose)  at room temperature in dark. Pollen tube length and tip morphology were examined at various time points (2 to 16 h) using a Leica dissecting microscope for higher magnification. The relative length of pollen tubes was measured at 12 h using the tool DIGIMIZER 188.8.131.52.
Study of in vivo pollen tube growth and seed formation in siliques
To examine in vivo pollen tube growth, about 10 mature flowers at stage 14  were fixed in acetic acid/ethanol (1:3) solution. Fixed floral tissues were cleared in 4 M NaOH and stained with aniline blue following a previously published method . Pollen tube growth in the pistil was examined using a fluorescent compound microscope (Leica microscope DM2500).
To evaluate fertilization, mature siliques were measured for their lengths and dissected to identify aborted seeds. Siliques were also decolorized by incubation in 100% ethanol at 37°C overnight to visualize the seed set.
For in vivo reciprocal cross-pollination, 40 floral buds at stage 12  were emasculated per cross a day before hand-pollination. Fresh pollen at flower stage 13  was fully applied to the stigma of the emasculated flower. After a 12-h pollination, the pollinated pistil was fixed with 25% acetic acid in ethanol, hydrated with an ethanol series (70%, 50% and 30% ethanol), and treated with 8 M NaOH overnight to allow softening, the pollen tube distribution in each silique was observed after staining with 0.1% (w/v) aniline blue solution containing 108 mM K3PO4 at pH 11 and 2% glycerol, and examined as described above.
For the fertilization study, half of the pollinated flowers were further grown in the growth chamber for 8 to 10 d. Siliques were dissected or decolorized at maturity to examine seed set.
Microscopic investigations of anther development after paraffin-section
Anthers were fixed in FAA (10% formaldehyde, 3% acetic acid and 43.5% ethanol) placed under vacuum for 1 h and then keep room temperature. After dehydration in a graded ethanol series and diaphaneity in clearing medium, the material was embedded in Paraffins (from HuaShenPai). Sections (6 μm) were obtained with a Leica Reichert Supernova microtome, placed on glass slides, and stained with a solution of 1%(w/v) toluidine blue O (toluidine blue O 1 g, 95% alcohol 4 mL, 10% acetic acid 10 mL, distilled water 86 mL). Sections examined using a Leica fluorescent compound microscope and Images were captured with a Leica DFC420 camera, and processed with Leica Application Suite software.
The images of whole morphology of WT and mutant were captured using SONY DSC-H50 camera. And the flowers, siliques and seeds morphology were examined using a Leica dissecting microscope.
Pollen grain viability assay
Anthers were removed from flowers and mounted in a drop of Alexander’s  stain under a cover glass to study the abundance of pollen grains, and mature pollen grains from the WT and mutant flower buds and stained with Alexander’s staining solution, and examined using a fluorescent compound microscope (Leica microscope).
Light and fluorescence microscopy
The DAPI (4,6-diamino-2-phenylindole dihydrochloride) staining of chromosomes in the male meiocytes was performed according to the method reported by Ross et al. . The young buds were fixed with Carnoy’s fixative. Fixed buds were rinsed in five changes of 1 min washes in acetic buffer (10 mM sodium acetic, pH 4.5). Buds were digested with 0.3% cytohelicase, 0.3% cellulose and 0.3% pectolyase in distilled water for an hour at 37°C, and then washed with 10 mM acetic buffer two times. A drop of 60% acetic acid was added to the glass slide and the slide was incubated at 42°C for 1–2 min. Slides were stained with 2 mg/mL of DAPI (Sigma-Aldrich) and examined by a Leica DM2500 fluorescence microscope.
For the analysis of spores at earlier stages, single anthers were dissected from isolated buds using a dissecting microscope (Zeiss, Stemi SV8).Anthers were disrupted on microscope slides using dissecting needles and gently squashed in DAPI staining solution (0.8 μg/mL) under a coverslip.
To determine at which developmental stage the mutant defection, inflorescences containing buds at different developmental stages were fixed in ethanol: acetic acid (3:1; v/v) and stored at 4°C. Buds were dissected on a microscope slide and microspores or pollen were stained in 0.8 μg/mL DAPI.
Differential interference contrast microscopy was used to observe female gametophytes that had been fixed in ethanol: acetic acid (3:1) and cleared using chloral hydrate solution (8 g of chloral hydrate, 1 mL of glycerol, and 2 mL of water). Images were captured with Leica DM2500 microscope.
Total RNA was extracted from buds with the TRizol (Invitrogen), and 10 μg of RNA was treated with DNase I (TAKARA, http://www.takara-bio.com) and used for cDNA synthesis with an oligo (dt) primer and a First Strand cDNA Synthesis Kit (TAKARA). PCR was performed with the SYBR-Green PCR Mastermix (TAKARA) and amplification was monitored on a MJR Opticon Continuous Fluorescence Detection System (Bio-Rad). At least three biological replicates were performed, with three technical replicates for each sample. The sequences of primers used in these studies are presented in Additional file 4: Table S1.
The DIG RNA Labeling Kit (Roche) and DIG ProbeSynthesis Kit (Roche) were used for the in situ hybridization. An AtMMS21-specific cDNA fragment of 297 bp was amplified and cloned into the pSKvector. Antisense and sense digoxigenin-labeled probes were prepared as described by Zhu et al. . The primers for the in situ hybridization were hmms21F (5′—GGATCC ATTCTGTGGCTGAGTTATTG-3′) and mms21R (5′-CTGCAG ATGTCATGTTTAGAAGAGGG-3′).
Analysis of SUMOylation profiles
Total protein of mature pollen grains were extracted with extraction buffer (50 mM PBS PH = 7.4, 200 mM NaCl, 10 mM MgCl2, Glycerol 10%, add protease inhibitor cocktail tablets 10 mL/one mini tablet, Roche) and separated by SDS–PAGE. Proteins were separated on a 10% polyacrylamide gel and transferred to PVDF membrane. Polyclonal SUMO1 antibody (Agrisera) diluted in the ratio 1:3000 was applied followed by an anti-rabbit IgG coupled to HRP and detected using ECL plus (Amersham Pharmacia).
This work was supported by the National Science Foundation of China (31170269, U1201212,31370350), Education Department of Guangdong Province (2012CXZD0019), Guangdong Provincial Department of Science and Technology(S2012020011032, 2011A020201005)and Guangdong Province Universities and Colleges Pearl River Scholar Funded Scheme (2010).
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