Table 3 Genes up-regulated in the tomato pedicel distal region (Dis) compared with the proximal region (Prox)

Transcription factor

Solyc02g089200^a

A_96_P195359

TM29 BG734619

AT5G15800

SEP1 (SEPALLATA1)

8.8

0.004

2.4

< 0.001

Solyc05g015750^a

A_96_P000181

TDR5 AY294330

AT1G24260

SEP3 (SEPALLATA3)

7.4

0.018

4.6

< 0.001

Solyc07g006880

A_96_P040576

AK326074

AT5G57520

ZFP2 (ZINC FINGER PROTEIN 2)

7.0

0.006

3.0

<0.001

Solyc01g093960^a

A_96_P204169

BI203609

AT2G45650

AGL6 (AGAMOUS-LIKE 6)

6.5

0.005

0.4

0.041

Solyc06g073920^a

A_96_P249912

AK328263

AT1G08465

YAB2 (YABBY2)

5.6

< 0.001

1.2

0.013

Solyc02g085630

A_96_P039876

AI898032

AT4G36740

ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)

5.5

0.023

0.6

0.059

Solyc02g086690

A_96_P163816

AW737355

AT5G40350

MYB24 (myb domain protein 24)

5.1

< 0.001

1.5

0.009

Solyc12g038510^a

A_96_P114197

SlMBP21 TA53678_4081

AT5G15800

SEP1 (SEPALLATA1)

5.0

0.001

0.2

0.051

Solyc12g100150

A_96_P191189

AK328730

AT1G31320

LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)

4.8

0.001

1.1

0.028

Solyc01g106250

A_96_P113847

TA53587_4081

AT5G60142

DNA binding

4.6

0.010

1.2

0.024

Solyc02g085910

A_96_P050501

AK328874

AT3G02550

LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41)

4.3

0.006

0.8

0.127

Solyc04g079360

A_96_P185909

BG126724

AT3G50060

MYB77 (myb domain protein 77)

4.2

0.008

1.8

0.005

Solyc04g081000^a

A_96_P206659

TAP3 DQ674532

AT3G54340

AP3 (APETALA 3)

4.1

0.004

1.2

0.017

Solyc07g008020

A_96_P212749

AK319758

AT4G32280

IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)

4.0

0.005

1.8

0.076

Solyc03g044300

A_96_P172149

SlAP2a AK326004

AT4G36920

AP2 (APETALA 2)

3.8

0.007

2.0

0.022

Solyc07g066330

A_96_P252807

TC202847

AT1G56010

ANAC022 | NAC1

3.4

0.012

0.1

0.494

Solyc07g063410

A_96_P046081

AK323372

AT4G27410

ANAC072 | RD26 (RESPONSIVE TO DESICCATION 26)

3.3

0.018

0.9

0.101

Phytohormone-related function

Solyc02g064690^a

A_96_P209009

BP875651

AT4G37580

HLS1 (HOOKLESS 1)

4.8

0.003

2.4

0.001

Solyc02g092490

A_96_P079464

AK247718

AT4G37580

HLS1 (HOOKLESS 1)

3.6

0.019

1.2

0.101

Solyc01g107400

A_96_P042196

BW692346

AT2G14960

GH3.1

4.0

0.035

1.7

0.008

Solyc07g026650

A_96_P020931

SlACO5 AJ715790

AT2G19590

ACO1 (ACC OXIDASE 1)

4.4

0.020

0.2

0.553

Solyc10g017990

A_96_P028296

BG130984

AT5G56970

CKX3 (CYTOKININ OXIDASE 3)

4.3

0.026

−1.5

0.291

Solyc12g008900

A_96_P107909

TA49618_4081

AT5G56970

CKX3 (CYTOKININ OXIDASE 3)

4.3

0.017

−1.5

0.296