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Table 3 Main QTLs for seven seed and berry-related traits in three grapevine mapping populations (consensus maps)

From: New stable QTLs for berry weight do not colocalize with QTLs for seed traits in cultivated grapevine (Vitis vinifera L.)

Trait1 LG Population Years CI extremes Max LOD peak Max % variance Largest allelic effects2 QTL already published (References)
MBW 8 SxG 05,06 21.2-56.3 8.5 16 Af,D No
MBW 11 MTP3140 95,98 0-25.7 6.6 11 Af,Am No
MBW 17 MTP3140 95,98,99 18-28.3 10.3 13 Am,D No
MBW 17 SxG 05,06,07 9.3-20.4 17.1 31 Am No
MBW 18 MTP3140 94,95,96,98,99 87.6-93.3 38.6 61 Af,Am Yes [25, 2729]
MBW 18 SxG 06,07 32.6-43.3 6.6 9 Am,D No
RESFW 8 SxG 05,06,07 9.2-56.3 10.7 17 Af,Am No
RESFW 13 SxG 05,06,07 0-32.2 9.7 18 Af,Am No (but MBW [43])
RESFW 17 SxG 05,06,07 9.3-20.4 16.7 24 Af,Am No
RESFW 18 SxG 06,07 34-43.3 9.5 12 Am No
RESN 8 SxG 05,06 22.7-56.3 9.5 15 Af No
RESN 11 MTP3140 94,95,98 0-33.7 7.5 18 Af,Am No
RESN 17 MTP3140 94,95,98 18-30.3 8.8 13 Am No
RESN 17 SxG 05,06,07 9.3-22.4 17.8 29 Am No
RESN 18 MTP3140 94,95,96,98,99 84-93.3 21.1 45 Af,Am,D No
RESN 18 SxG 06,07 32.6-43.3 7.2 10 Am No
MSN 2 SxG 05,06,07 2-23.3 24.8 48 Af,Am,D Yes [29]
MSN 4 SxG 05,06,07 47.7-56 15.8 29 Af No
MSN 18 MTP3140 94,98,99 89.6-98.3 24.4 59 Af,Am,D Yes [25, 28]
TSFW 4 SxG 06,07 51.7-56 14.2 29 Af No
TSFW 18 MTP3140 96,98,99 89.6-93.3 45.6 82 Af,Am Yes [25, 27, 28]
MSFW 1 SxG 06,07 14-33.1 8.0 15 Af,Am No (but TSFW [27])
MSFW 2 SxG 05,06,07 0-33.3 21.4 45 Am,D No
MSFW 12 MTP3140 95,99 0-23 6.7 3 Am,D No
MSFW 18 MTP3140 94,95,98,99 87.6-98.3 61.4 87 Af,Am,D Yes [25, 29]
%SDM 14 MTP3234 03,04 24-41 16.1 51 Am,D No
%SDM 18 MTP3140 98,99 87.6-93.3 47.9 84 Af,Am Yes [25, 29]
  1. QTLs derived with the MQM method. Only the QTLs found for at least two years are presented. All QTLs in this table were also significant for the BLUP of the studied trait. Confidence Interval (CI) extremes were the extremes of all CIs of both year-specific and BLUP QTLs. The genome-wide first type error rate was α = 0.05.
  2. 1MBW: mean berry weight; MSN: mean seed number; TSFW: total seed fresh weight; MSFW: mean seed fresh weight; %SDM: seed dry matter percentage; RESN: residual berry weight unexplained by seed number; RESFW: residual berry weight unexplained by total seed fresh weight.
  3. 2Major allelic effects: Af female, Am male, D dominance.