Myers N, Mittermeier RA, Mittermeier CG, da Fonesca GAB, Kent J: Biodiversity hotspots for conservation priorities. Nature. 2000, 403 (6772): 853-858. 10.1038/35002501.
Article
PubMed
CAS
Google Scholar
Antonelli A, Nylander JAA, Persson C, Sanmartínc I: Tracing the impact of the Andean uplift on neotropical plant evolution. Proc Natl Acad Sci USA. 2009, 106 (24): 9749-9754. 10.1073/pnas.0811421106.
Article
PubMed
CAS
PubMed Central
Google Scholar
Elias M, Joron M, Willmott K, Silva-Brandão KL, Kaiser V, Arias CF, Piñerez LMG, Uribe S, Brower AVZ, Freitas AVL: Out of the Andes: patterns of diversification in clearwing butterflies. Mol Ecol. 2009, 18 (3): 1716-1729.
Article
PubMed
CAS
Google Scholar
Hoorn C, Wesselingh FP, ter Steege H, Bermudez MA, Mora A, Sevink J, Sanmartin I, Sanchez-Meseguer A, Anderson CL, Figueiredo JP, Jaramillo C, Riff D, Negri FR, Hooghiemstra H, Lundberg J, Stadler T, Saerkinen T, Antonelli A: Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science. 2010, 330 (6006): 927-931. 10.1126/science.1194585.
Article
PubMed
CAS
Google Scholar
Linder HP: The radiation of the cape flora, Southern Africa. Biol Rev (Camb). 2003, 78 (4): 597-638.
Article
CAS
Google Scholar
Richardson JE, Weitz FM, Fay MF, Cronk QCB, Linder HP, Reeves G, Chase MW: Rapid and recent origin of species richness in the cape flora of South Africa. Nature. 2001, 412 (6843): 181-183. 10.1038/35084067.
Article
PubMed
CAS
Google Scholar
Janssen T, Bystriakova N, Rakotondrainibe F, Coomes D, Labat JN, Schneider H: Neoendemism in Madagascan scaly tree ferns results from recent, coincident diversification bursts. Evolution. 2008, 62 (8): 1876-1889. 10.1111/j.1558-5646.2008.00408.x.
Article
PubMed
Google Scholar
Vences M, Wollenberg KC, Vieites DR, Lees DC: Madagascar as a model region of species diversification. Trends Ecol Evol. 2009, 24 (8): 456-465. 10.1016/j.tree.2009.03.011.
Article
PubMed
Google Scholar
Linder HP: Plant species radiation: where, when, why?. Phil Trans R Soc B. 2008, 363 (1506): 3097-3105. 10.1098/rstb.2008.0075.
Article
PubMed
PubMed Central
Google Scholar
Che J, Zhou WW, Hu JS, Yan F, Papenfuss TJ, Wake DB, Zhang YP: Spiny frogs (Paini) illuminate the history of the Himalayan region and Southeast Asia. Proc Natl Acad Sci USA. 2010, 107 (31): 13765-13770. 10.1073/pnas.1008415107.
Article
PubMed
CAS
PubMed Central
Google Scholar
Chen ST, Xing YW, Su T, Zhou ZK, Dilcher DL, Soltis DE: Phylogeopraphic analysis reveals significant spatial genetic structure if Incarvellia sinensis as a product of mountain building. BMC Plant Biol. 2012, 12: 58-10.1186/1471-2229-12-58.
Article
PubMed
PubMed Central
Google Scholar
Guo XG, He SP, Zhang YG: Phylogeny and biogeography of Chinese sisorid catfishes re-examined using mitochondrial cytochrome b and 16S rRNA gene sequences. Mol Phylogenet Evol. 2005, 35 (2): 344-362. 10.1016/j.ympev.2004.12.015.
Article
PubMed
CAS
Google Scholar
Liu JQ, Wang YJ, Wang AL, Hideaki O, Abbott RJ: Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) trigerred by uplift of the Qinghai-Tibetan Plateau. Mol Phylogenet Evol. 2006, 38 (1): 31-49. 10.1016/j.ympev.2005.09.010.
Article
PubMed
CAS
Google Scholar
Qu Y, Lei F: Comparative phylogeography of two endemic birds of the Tibetan plateau, the white-rumped snow finch (Onychostruthus taczanowskii) and the Hume’s ground tit (Pseudopodoces humilis). Mol Phylogenet Evol. 2009, 51 (2): 312-326. 10.1016/j.ympev.2009.01.013.
Article
PubMed
CAS
Google Scholar
Sun YS, Wang A, Wan DS, Wang Q, Liu JQ: Rapid radiation of Rheum (Polygonaceae) and parallel evolution of morphological traits. Mol Phylogenet Evol. 2012, 63 (1): 150-158. 10.1016/j.ympev.2012.01.002.
Article
PubMed
Google Scholar
Zhang ML, Fritsch PW: Evolutionary response of Caranga (Fabaceae) to Quinghai-Tibetan plateau uplift and Asian interior aridification. Plant Syst Evol. 2010, 288 (3–4): 191-199.
Article
Google Scholar
Harris N: The elevation history of the Tibetan plateau and its implications for the Asian monsoon. Palaeogeogr Palaeoclimatol Palaeoecol. 2006, 241 (1): 4-15. 10.1016/j.palaeo.2006.07.009.
Article
Google Scholar
Passey BH, Ayliffe LK, Kaakinen A, Zhang ZQ, Eronen JT, Zhu YM, Zhou LP, Cerling TE, Fortelius M: Stengthened East Asian summer monsoons during a period of high-latitute warmth? isotopic evidence from Mio-Pliocene fossil mammals and soild carbonates from Northern China. Earth Planet Sci Lett. 2009, 277 (3–4): 443-452.
Article
CAS
Google Scholar
Spicer RA, Harris NBW, Widdowson M, Herman AB, Guo S, Valdes PJ, Wolfe JA, Kelley SP: Constant elevation of southern Tibet over the past 15 million years. Nature. 2003, 421 (6923): 622-624. 10.1038/nature01356.
Article
PubMed
CAS
Google Scholar
Sun XJ, Wang PX: How old is the Asian monsoon system?-palaeobotanical records from China. Paleogeogr Paleoclimatol Paleoecol. 2005, 222 (3–4): 181-222.
Article
Google Scholar
Yao YF, Bruch AA, Mosbrugger V, Li CS: Quantitative reconstruction of Miocene climate patterns and evolution in Southern China based on plant fossils. Palaeogeogr Palaeoclimatol Palaeoecol. 2011, 304 (3–4): 291-307.
Article
Google Scholar
Zheng HB, McPowell CA, Red DK, Wang JL, Wang PX: Late Miocene and mid-Pliocene enhancement of the East Asian monsoon as viewed from the land and sea. Global Planet Change. 2004, 41 (3–4): 147-155.
Article
Google Scholar
Royden LH, Burchfiel BC, van der Hilst RD: The geological evolution of the Tibetan Plateau. Science. 2008, 321 (5892): 1054-1058. 10.1126/science.1155371.
Article
PubMed
CAS
Google Scholar
Li JJ, Wen SX, Zhang QS, Wang FB, Zheng BX, Li BY: A discussion on the period, amplitude and type of the uplift of the Qinghai-Xizang Plateau. Sci Sin. 1979, 22: 1314-1328.
Google Scholar
Qiu YX, Fu CX, Comes HP: Plant molecular phylogeography in China and adjacent regions: tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora. Mol Phylogenet Evol. 2011, 59 (1): 225-244. 10.1016/j.ympev.2011.01.012.
Article
PubMed
Google Scholar
Zhou SZ, Wang XL, Wang J, Xu LB: A preliminary study on timing of the oldest Pleistocene glaciation in Qinghai–Tibetan Plateau. Quatern Intern. 2006, 154–155: 44-51.
Article
Google Scholar
An Z, Kutzbach JE, Prell WL, Porter SC: Evolution of Asian monsoons and phased uplift of the Himalayan-Tibetan Plateau since Late Miocene times. Nature. 2001, 411 (6833): 62-66. 10.1038/35075035.
Article
CAS
Google Scholar
Li FJ, Rousseau DD, Wu NQ, Hao QZ, Pei YP: Late Neogene evolution of the East Asian monsoon revealed by terrestrial mollusk record in Western Chinese Loess Plateau: from winter to summer dominated sub-regime. Earth Planet Sci Lett. 2008, 274 (3–4): 439-447.
Article
CAS
Google Scholar
Liu X, Yin ZY: Sensitivity of East Asian monsoon climate to the uplift of the Tibetan Plateau. Palaeogeogr Palaeoclimatol Palaeoecol. 2002, 183 (3–4): 223-225.
Article
Google Scholar
Jacques FMB, Go SX, Xing YW, Huang YJ, Liu YS, Ferguson DK, Zhou ZK: Qunatitive reconstruction of the late Miocene monsoon climates of southwest China: a case study of the lincang flora from Yunnan province. Palaeogeogr Palaeoclimatol Palaeoecol. 2011, 304 (3–4): 318-327.
Article
Google Scholar
Wan S, Li AC, Clift PD, Stuut JBW: Development of the East Asian monsoon: mineralogical and sedimentological records in the northern South China Sea since 20 Ma. Palaeogeogr Palaeoclimatol Palaeoecol. 2007, 254 (3–4): 561-582.
Article
Google Scholar
Steinke S, Groeneveld J, Johnstone H, Rendle-Bühringa R: East Asia summer monsoon weakening after 75 Ma: evidence from combined planktonic foraminifera Mg/Ca and δ18O (ODP site 1146; northernS China Sea). Paleogeogr Paleoclimatol Paleoecol. 2010, 289 (1–4): 33-43.
Article
Google Scholar
Schneider H, Schuettpelz E, Pryer KM, Cranfill R, Magallón S, Lupia R: Ferns diversified in the shadow of angiosperms. Nature. 2004, 428 (6982): 553-557. 10.1038/nature02361.
Article
PubMed
CAS
Google Scholar
Schneider H, Kreier HP, Janssen T, Otto E, Muth H, Heinrichs J: Key innovations versus key opportunities: identifying causes of rapid radiations in derived ferns. Evolution in action. Edited by: Glaubrecht M. 2010, Berlin: Springer, 61-76.
Chapter
Google Scholar
Schuettpelz E, Pryer KM: Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy. Proc Natl Acad Sci USA. 2009, 106 (27): 11200-11205. 10.1073/pnas.0811136106.
Article
PubMed
CAS
PubMed Central
Google Scholar
Kreft H, Jetz W, Mutke J, Barthlott W: Contrasting environmental and regional effects on global pteridophyte and seed plant diversity. Ecography. 2010, 33 (2): 408-419. 10.1111/j.1600-0587.2010.06434.x.
Article
Google Scholar
Chen SB, Jiang GM, Ouyang ZY, Xu WH, Xiao Y: Relative importance of water, energy, and heterogeneity in determining regional pteridophyte and see plant richness in China. J Syst Evol. 2011, 49 (2): 95-107. 10.1111/j.1759-6831.2011.00120.x.
Article
Google Scholar
Schnitzler J, Barraclough TG, Boatwright JS, Goldblatt P, Manning JC, Powell MP, Rebelo T, Savolainen V: Causes of plant diversification in the cape biodiversity hotspot of South Africa. Syst Biol. 2011, 60 (3): 343-357. 10.1093/sysbio/syr006.
Article
PubMed
Google Scholar
Wang L, Qi XP, Xiang QP, Heinrichs J, Schneider H, Zhang XC: Phylogeny of the paleotropical fern genus Lepisorus (Polypodiaceae, Polypodiopsida) inferred from four chloroplast genome regions. Mol Phylogenet Evol. 2010, 54 (1): 211-225. 10.1016/j.ympev.2009.08.032.
Article
PubMed
CAS
Google Scholar
Wang L, Wu ZQ, Bystriakova N, Ansell SW, Xiang QP, Heinrichs J, Schneider H, Zhang XC: Phylogeography of the Sino-Himalayan fern Lepisorus clathratus on “the roof of the world”. PLoS One. 2011, 6: e25896-10.1371/journal.pone.0025896.
Article
PubMed
CAS
PubMed Central
Google Scholar
Brock CD, Harmon LJ, Alfaro ME: Testing for temporal variation in diversification rates when sampling is incomplete and nonrandom. Syst Biol. 2011, 60 (4): 416-419.
Article
Google Scholar
Cusimano N, Renner SS: Slowdowns in diversification rates from real phylogenies may not be real. Syst Biol. 2010, 59 (4): 458-464. 10.1093/sysbio/syq032.
Article
PubMed
Google Scholar
Liow LH, Quental TB, Marshall CR: When can decreasing diversification rates be detected with molecular phylogenies and the fossil record. Syst Biol. 2010, 59 (6): 646-659. 10.1093/sysbio/syq052.
Article
PubMed
Google Scholar
Quental TB, Marshall CR: Diversity dynamics: molecular phylogenies need the fossil record. Trends Ecol Evol. 2010, 25 (8): 434-441. 10.1016/j.tree.2010.05.002.
Article
PubMed
Google Scholar
Rabosky DL: Extinction rates should not be estimated from molecular phylogenies. Evolution. 2010, 64 (6): 1816-1824. 10.1111/j.1558-5646.2009.00926.x.
Article
PubMed
Google Scholar
Qi XP, Zhang XC: Taxonomic revision of Lepisorus (J Sm) Ching sect Lepisorus (Polypodiaceae) from China. Acta Phytotax Sinica. 2009, 47 (6): 581-598. 10.1111/j.1759-6831.2009.00056.x.
Google Scholar
Qi XP, Zhang XC, Wei R: Taxonomic revision of Lepisorus sect Sclerophyllon (Polypodiaceae) from China. Acta Bot Yunn Supp. 2010, XVII: 55-64.
Google Scholar
Zink MJ: Systematics of the fern genus Lepisorus (J Smith) Ching (Polypodiaceae, Lepisoreae). 1993, Zurich: PhD Dissertation University Zurich.
Google Scholar
Hovenkamp P: An account of the fern genus Belvisia Mirbel (Polypodiaceae). Blumea. 1993, 37: 511-527.
Google Scholar
Liu QR, Ming GH, Ge Y, Zhang XC: A taxonomic revision of Lepisorus sect Hymenophyton (Polypodiaceae) from China. J Syst Evol. 2008, 46 (6): 906-915.
Google Scholar
Wang L, Wu ZQ, Xiang QP, Heinrichs J, Schneider H, Zhang XC: A molecular phylogeny and a revised classification of tribe Lepisoreae (Polypodiaceae) based on an analysis of four plastid DNA regions. Bot J Linn Soc. 2010, 162 (1): 28-38. 10.1111/j.1095-8339.2009.01018.x.
Article
Google Scholar
Shinohara W, Ushio Y, Seo A, Nakato N, Kono M, Udoh H, Tobe H, Murakami N: Evidence for hybrid orign and segmental allopolyploidy in eutetraploid and aneutetraploid Lepisorus thunbergianus (Polypodiaceae). Syst Bot. 2010, 35 (1): 20-29. 10.1600/036364410790862498.
Article
Google Scholar
Wood TE, Takebayashi N, Barker MS, Mayrose I, Greenspoon PB, Rieseberg LH: The frequency of polyploid speciation in vascular plants. Proc Natl Acad Sci USA. 2009, 106 (33): 13869-13875.
Article
Google Scholar
Pybus OG, Harvey PH: Testing macro-evolutionary models using incomplete molecular phylogenies. Proc R Soc B. 2000, 267 (1459): 2267-2272. 10.1098/rspb.2000.1278.
Article
PubMed
CAS
PubMed Central
Google Scholar
Rabosky DK: LASER: a maximum likelihood toolkit for detecting temporal shifts in diversification rates from molecular phylogenies. Evol Bioinform. 2006, 2: 257-260.
CAS
Google Scholar
Venditti C, Meade A, Pagel M: Phylogenies reveal new interpretation of speciation and the red queen. Nature. 2010, 463 (7279): 349-352. 10.1038/nature08630.
Article
PubMed
CAS
Google Scholar
Buerki S, Forrest F, Alvarez N, Nylander JAA, Arrigo N, Sanmartin I: An evaluation of new parsimony-based versus parametric inference methods in biogeography: a case study using the globally distributed plant family Sapindaceae. J Biogeogr. 2011, 38 (3): 531-550. 10.1111/j.1365-2699.2010.02432.x.
Article
Google Scholar
Nylander JAA, Olson U, Alstrom P, Sanmartin I: Accounting for phylogenetic uncertainty in biogeography: a Bayesian approach to dispersal-vicariance analysis of the trushes (Aves: Turdus ). Syst Biol. 2008, 57 (2): 257-268. 10.1080/10635150802044003.
Article
PubMed
Google Scholar
Van Uffelen GA: Fossil polypodiaceae and their spores. Blumea. 1991, 36: 253-272.
Google Scholar
Ho SYW: Calibrating molecular estimates of substitution rages and divergence times in birds. J Avian Biol. 2007, 38 (4): 409-414.
Article
Google Scholar
Wang L, Schneider H, Wu ZQ, He LJ, Zhang XC, Xiang QP: Indehiscent sporangia enable the accumulation of local fern diversity at the Qinghai-Tibetan Plateau. BMC Evol Biol. 2012, 12: 158-10.1186/1471-2148-12-158.
Article
PubMed
PubMed Central
Google Scholar
Wertheim JO, Sanderson MJ: Estimating diversification rates; how useful are divergence times?. Evolution. 2011, 65 (2): 309-320. 10.1111/j.1558-5646.2010.01159.x.
Article
PubMed
PubMed Central
Google Scholar
Mao KS, Hao G, Li JQ, Adams RP, Milne RI: Diversification and biogeography of Juniperus (Cupressaceae): variable diversification rates and multiple intercontinental dispersals. New Phytol. 2010, 188 (2): 254-272.
Article
PubMed
CAS
Google Scholar
Lopez-Pujol J, Zhang FM, Sun HQ, Ying TS, He S: Mountains of southern china as “plant museums” and “plant cradles”. Mount Res Devel. 2011, 31 (3): 261-269. 10.1659/MRD-JOURNAL-D-11-00058.1.
Article
Google Scholar
Wang YL, Susanna A, von Rabb-Straube E, Milne R, Liu JQ: Island-like radiation of Saussurea (Asteraceae: Cardueae) triggered by uplifts of the Qinghai-Tibetan Plateau. Biol J Linn So. 2009, 97 (6): 863-903.
Google Scholar
Hovenkamp P: Lepisorus in Malesia. Blumea. 1998, 43: 109-115.
Google Scholar
Maddison DR, Maddison WP: MacClade 408 sinauer associates, Sunderland, mass. 2005
Google Scholar
Swofford DL: PAUP* phylogeneitc analysis using parsimony (*and other methods) version 4. Sunderland, Mass: Sinauer Associates 2002.
Google Scholar
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hirdijk W, Gascuel O: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol. 2010, 59 (3): 307-321. 10.1093/sysbio/syq010.
Article
PubMed
CAS
Google Scholar
Huelsenbeck JP, Ronquist F: MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics. 2001, 17 (8): 754-755. 10.1093/bioinformatics/17.8.754.
Article
PubMed
CAS
Google Scholar
Posada D: jModelTest: phylogenetic model averaging. Mol Biol Evol. 2008, 25 (7): 1253-1256. 10.1093/molbev/msn083.
Article
PubMed
CAS
Google Scholar
Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 2007, 7: 214-10.1186/1471-2148-7-214.
Article
PubMed
PubMed Central
Google Scholar
Drummond AJ, Ho SYW, Philips MJ, Rambaut A: Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4: 699.
Article
CAS
Google Scholar
Willyard A, Syring J, Gernandt DS, Liston A, Cronn R: Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations of Pinus. Mol Biol Evol. 2007, 24 (1): 90-101.
Article
PubMed
Google Scholar
Wolfe KH, Li WH, Sharp PM: Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA. 1987, 84 (24): 9054-9058. 10.1073/pnas.84.24.9054.
Article
PubMed
CAS
PubMed Central
Google Scholar
Yu Y, Harris AJ, He XJ: S-DIA (statistical dispersal-vicariance analysis): a tool for inferring biogeographic histories. Mol Phylogenet Evol. 2010, 56 (3): 848-850.
Article
PubMed
Google Scholar
Paradis E, Claude J, Strimmer K: APE: analyses of phylogenetics and evolution in R language. Bioinfor. 2004, 20 (2): 289-290. 10.1093/bioinformatics/btg412.
Article
CAS
Google Scholar
Harmon LJ, Weit J, Brock C, Glor RE, Challenger W: GEIGER: investigating evolutionary radiations. Bioinfor. 2008, 24 (1): 129-131. 10.1093/bioinformatics/btm538.
Article
CAS
Google Scholar
Rabosky DK, Lovette IJ: Density-dependent diversification in North American wood warblers. Proc R Soc B. 2008, 275 (1649): 2363-2371. 10.1098/rspb.2008.0630.
Article
PubMed
PubMed Central
Google Scholar