- Research article
- Open Access
Characterization of a eukaryotic translation initiation factor 5A homolog from Tamarix androssowii involved in plant abiotic stress tolerance
BMC Plant Biologyvolume 12, Article number: 118 (2012)
The eukaryotic translation initiation factor 5A (eIF5A) promotes formation of the first peptide bond at the onset of protein synthesis. However, the function of eIF5A in plants is not well understood.
In this study, we characterized the function of eIF5A (TaeIF5A1) from Tamarix androssowii. The promoter of TaeIF5A1 with 1,486 bp in length was isolated, and the cis-elements in the promoter were identified. A WRKY (TaWRKY) and RAV (TaRAV) protein can specifically bind to a W-box motif in the promoter of TaeIF5A1 and activate the expression of TaeIF5A1. Furthermore, TaeIF5A1, TaWRKY and TaRAV share very similar expression pattern and are all stress-responsive gene that functions in the abscisic acid (ABA) signaling pathway, indicating that they are components of a single regulatory pathway. Transgenic yeast and poplar expressing TaeIF5A1 showed elevated protein levels combined with improved abiotic stresses tolerance. Furthermore, TaeIF5A1-transformed plants exhibited enhanced superoxide dismutase (SOD) and peroxidase (POD) activities, lower electrolyte leakage and higher chlorophyll content under salt stress.
These results suggested that TaeIF5A1 is involved in abiotic stress tolerance, and is likely regulated by transcription factors TaWRKY and TaRAV both of which can bind to the W-box motif. In addition, TaeIF5A1 may mediate stress tolerance by increasing protein synthesis, enhancing ROS scavenging by improving SOD and POD activities, and preventing chlorophyll loss and membrane damage. Therefore, eIF5A may play an important role in plant adaptation to changing environmental conditions.
Eukaryotic initiation factor 5A (eIF5A) is a small protein ubiquitously present throughout the eukaryotic kingdom. The protein was initially identified in rabbit reticulocytes as a factor involved in formation of the first peptide bond [1, 2]. EIF5A is a highly conserved protein and contains the post-translationally synthesized amino acid hypusine . Molecular and biochemical studies in yeast and mammalian cells demonstrated that eIF5A is synthesized as an inactive precursor that is activated by a post-translational hypusine modification that is only detected in the eIF5A protein, and consists of a two-step sequential reaction catalyzed by deoxyhypusine synthase (DHS, EC:188.8.131.52) and deoxyhypusine hydroxylase (DHH, EC184.108.40.206) [4, 5].
The precise cellular function of eIF5A is not fully understood. It was originally considered to be a translation initiation factor as it can stimulate methionyl-puromycin synthesis in vitro and transiently attach to ribosomes to begin eukaryotic cellular protein synthesis. In addition, eIF5A promotes the formation of the first peptide bond at the initiation of protein synthesis . Recent studies have demonstrated that eIF5A dysfunction significantly decreases protein synthesis in yeast, and that eIF5A promotes translation elongation in Saccharomyces cerevisiae[6–8]. Henderson and Hershey found that although eIF5A is not required for protein synthesis, eIF5A can stimulate the process by about 2- to 3-fold. They further draw a conclusion that the polysome profiles observe during and after eIF5A depletion are diagnostic for a role in initiation . In addition, eIF5A is involved in cellular proliferation and apoptosis , promotes cell viability and cell growth  and the synthesis of proteins involved in progression of the cell cycle . Moreover, eIF5A proteins are found to facilitate protein synthesis by participating in the nuclear export of specific mRNAs . Furthermore, eIF5A proteins also play a role in RNA binding, and contain a C-terminal domain with a structure that resembles an oligonucleotide-binding fold .
Plant eIF5A proteins are also highly conserved that are involved in multiple biological processes, including protein synthesis regulation, translation elongation, mRNA turnover and decay, cell proliferation, leaf and root growth, seed yield, leaf, flower and fruit senescence and programmed cell death [14–16]. Ma et al. showed that eIF5A plays roles in supporting plant growth and in regulating responses to sub-lethal osmotic and nutrient stress . Valentini et al. showed that eIF5A is involved in the WSC/PKC1 signaling pathway that controls cell wall integrity or related processes, and plays a role in cell wall formation . Hopkins et al. reported that eIF5A plays a vital role in signal transduction pathways involved in pathogen-induced cell death and in the development of plant disease symptoms. Plant eIF5A genes are also involved in abiotic stress responses . For instance, Xu et al. showed that transgenic Arabidopsis plants overexpressing RceIF5A show improved resistance to heat, oxidative and osmotic stresses, while the plants with reduced eIF5A expression (three AteIF5A isoforms in Arabidopsis are down-regulated) are more susceptible to these stresses . Chou et al. reported that salt and heavy metal stresses induce the expression of rice eIF5A genes, OseIF5A-1 and OseIF5A-2, suggesting that they are involved in stress tolerance .
However, little is known of the upstream regulators or its regulatory network, and its role in stress tolerance. In addition, if eIF5A does in fact confer stress tolerance in plants, the physiological changes mediated by eIF5A deserve further study.
Tamarix (Tamaricaceae) species, which include small trees or shrubs, are widely distributed in the saline soils of drought-stricken areas of Central Asia and China. Tamarix androssowii Litvinov is highly tolerant to abiotic stresses, such as salinity, drought and high temperatures. These characteristics make the species a suitable source of stress tolerance genes and for investigating endogenous stress resistance mechanisms.
In the present study, we cloned and functionally characterized an eIF5A from T. androssowii. We showed that TaeIF5A1 is a stress-responsive gene involved in the ABA signal transduction pathway. TaWRKY and TaRAV can active the expression of TaeIF5A1. In addition, TaeIF5A1 facilitates protein synthesis and regulates several physiological pathways to improve stress tolerance. This study reveals a physiological role for eIF5A and defines a possible mechanism for eIF5A-mediated stress tolerance in plants.
Cloning and analysis of TaeIF5A1 and its promoter
The TaeIF5A1 gene (GenBank number: AY587771), 801 bp in length and encoding a 159 aa protein with a predicted molecular weight of 17.33 kDa, was cloned from a T. androssowii. To investigate the homology of known eIF5A proteins, a phylogenetic tree was constructed (Figure 1), which showed that TaeIF5A1 is most similar to the eIF5A from Manihot esculenta and has a long evolutional distance from eIF5As of yeast and mammalian. However, there is little published information about the biological functions of these eIF5A proteins and their molecular functions await further study.
The promoter of TaeIF5A1 was cloned using TAIL-PCR, and a promoter fragment with 1486 bp (from −1 to −1486) in length was obtained. We identified diverse cis-elements in the promoter, including ARR1AT, DOFCOREZM, MYB1AT, MYBCORE and W-box (Additional file 1) using PLACE (http://www.dna.affrc.go.jp) . The W-box sequence “CTGACT” was identified in TaeIF5A1 promoter that shows high binding affinity to WRKY .
Expression of the TaeIF5A1 gene
Real-time RT-PCR showed that TaeIF5A1 can be detected in roots, stem and leaves, and is differentially regulated by different abiotic stresses. The expression of TaeIF5A1 was induced in roots by salt stress at 6 or 24 h, but not at other time points. In stems, TaeIF5A1 was down-regulated after 24 and 72 h of NaCl stress. Moreover, TaeIF5A1 was strongly down-regulated in leaves after 6, 24 and 72 h of NaCl stress, but its expression was unaffected at other time points (Figure 2A). The TaeIF5A1 was down-regulated in roots, stems and leaves following exposure to PEG stress for 24–72 h (Figure 2B). Interestingly, TaeIF5A1 exhibited the same expression pattern in roots, stems, and leaves under NaHCO3 stress, being up-regulated after 12, 24 and 72 h of stress and down-regulated at all other time points (Figure 2C). Following CdCl2 stress, TaeIF5A1 was generally down-regulated in roots, stems and leaves (Figure 2D). ABA treatment induced a marked inhibition of TaeIF5A1 expression in roots, stems and leaves by 6 h, followed by recovery thereafter (Figure 2E).
To further investigate the promoter activity of TaeIF5A1, the transgenic Arabidopsis plants expressing GUS under the control of TaeIF5A1 promoter were analyzed using GUS staining (Figure 3B). In young Arabidopsis (less than 3-week old), GUS activity was mainly confined to the cotyledons, the main root, the leaf tips, the tips of leaf teeth, veins and hydathodes (Figure 3Ba–e). GUS activity was present throughout the whole plant in five-week-old plants, and showed a step-wise reduction in both expression area and level in three-week-old and four-week-old plants (Figure 3Be–g). Further, changes in GUS expression pattern were observed during the development of the reproductive organs (Figure 3Bj–o). In flowers, high GUS expression was predominantly observed in the pistils, stigma, stamens, anther and petals, but not in the sepals (Figure 3Bj–l). In the siliques, GUS activity was present in the adhesion zones (Figure 3Bn). Consistent with real-time PCR results (Figure 2), these results indicated that TaeIF5A1 is expressed in all the tissues including leaves, roots, stems at all growth stages and reproductive organs.
Targeting TaeIF5A1 to nucleus and cytoplasm
The subcellular localization of TaeIF5A1 was determined using the TaeIF5A1::GFP fusion gene under the control of the CaMV 35S promoter. The TaeIF5A1::GFP fusion gene and GFP control were transformed into onion epidermal cells by particle bombardment. We detected the green fluorescent signal of TaeIF5A1–GFP in the nucleus and uniformly distributed throughout transformed cells (Figure 4), suggesting that the TaeIF5A1 protein showed nuclear and cytoplasm localization.
Analysis of the upstream regulator of TaeIF5A1
A W-box element was found in the TaeIF5A1 promoter, suggesting that TaeIF5A1 may be regulated by transcription factors that interact with W-box motif. To investigate the upstream regulator of TaeIF5A1, yeast one-hybrid assay was performed using the pHIS2-cis (containing triple tandem repeats of the W-box) reporter vector as bait to screen a Tamarix cDNA library. In total, two genes were found to specifically bind the W-box motif (Figure 5B): WRKY transcription factor (TaWRKY, GenBank number: JQ040808) and AP2/ERF and B3 domain-containing transcription factor (TaRAV, GenBank number: JQ040809).
To characterize the specific interaction between the W-box and TaWRKY and TaRAV, we mutated the core W-box motif “TGAC” to “TGGC”, “TAAC” and “TTTT”. Both TaWRKY and TaRAV could bind the W-box motif, but they failed to bind to each of the mutants (Figure 5B), indicating that both “G” and “A” in “TGAC” are necessary for W-box recognition. These results indicate that TaWRKY and TaRAV can specifically bind to the W-box.
To further investigate whether these two genes can activate the expression of TaeIF5A1, promoter fragments of 461 and 165 bp in length containing the W-box motif, and promoter fragment of 165 bp in length containing mutated core sequence “TTTT” were respectively inserted into pHIS2, and the interactions between these promoter fragments and the two genes were determined using the yeast one-hybrid system. We found that both TaWRKY and TaRAV can specifically bind to the two promoter fragments containing the W-box, but failed in binding to the promoter fragment containing the mutated core sequence “TTTT” and the control (N1, N2) (Figure 5C), indicating that they may regulate the expression of TaeIF5A1 through binding to the W-box motif in the promoter of TaeIF5A1.
To further confirm the above interactions, we co-transformed the effector constructs (pROKII-TaRVA or pROKII-TaWRKY) in which TaRVA or TaWRKY is driven by 35S promoter and their corresponding reporter plasmids (pCAM-W-box, pCAM-W165, pCAM-mW165) into tobacco leaves. Histochemical staining and GUS activity assay showed that the GUS gene was activated in tobacco cells when co-transformation of pROKII-TaRVA or pROKII-TaWRKY with pCAM-W-box and pCAM-W165; however co-transformation of pROKII-TaRVA or pROKII-TaWRKY with pCAM-mW165 failed in GUS activation (Figure 5D). These data clearly indicated that both TaRVA and TaWRKY can activate expression of TaeIF5A1 by binding to W-box motif in its promoter.
The expression patterns of TaRAV, TaWRKY and TaeIF5A1 were investigated using real-time RT-PCR. We found that both the expression of TaRAV and TaWRKY are induced by osmotic stress and negatively regulated by ABA treatment, suggesting that TaRAV and TaWRKY are stress response genes and involved in ABA signaling pathway. Moreover, TaRAV, TaWRKY and TaeIF5A1 all share very similar expression patterns under different stress conditions (Figure 6A, B).
Given the facts that TaRAV and TaWRKY can activate the expression of TaeIF5A1, we next studied if this mechanism of transcriptional regulation is also maintained in the model plant Arabidopsis. Using BLASTX program in Tair, we identified the homologs of TaeIF5A1, TaRAV and TaWRKY in Arabidopsis are AT1G13950, AT1G68840 and AT1G13960, respectively. Real time RT-PCR showed that as in T. androssowii, AT1G13950, AT1G68840 and AT1G13960 also shared a very similar expression patterns in Arabidopsis when exposed to ABA and osmotic stress (Figure 6C, D).
Functional analysis of the TaeIF5A1 gene using a S. cerevisiae expression system
Yeast transformants harboring TaeIF5A1 or the empty pYES2 vector were generated to investigate the role of TaeIF5A1 in stress tolerance. RNA gel blot showed that TaeIF5A1 can be induced in yeast cells, and reached a peak of expression after induction for 36 h (Figure 7A). Therefore, 36 h was selected as a suitable induction time. Yeast transformants harboring TaeIF5A1 or empty vector were grown on induction medium for 36 h, and then treated with different stress-inducing agents. Yeast cells expressing TaeIF5A1 exhibited better growth than control did under NaCl, KCl, LiCl and sorbitol stress conditions (Figure 7B), suggesting that expression of TaeIF5A1 in yeast increases tolerance to abiotic stresses.
We next compared the soluble protein content in three yeast transformants harboring TaeIF5A1, TaPrx1 (as control) or empty pYES2 (as control for investigating if the exogenous gene expressed). The protein content of yeast transformants harboring TaeIF5A1 was the highest, followed by transformants harboring TaPrx1 then empty vector (Figure 7C). Transformants harboring empty pYES2 failed to produce an exogenous gene and exhibited the lowest overall protein expression; the two other transformed strains expressed greater levels of protein, suggesting that the exogenous genes had been expressed. Yeast transformants harboring TaeIF5A1 displayed significantly (P < 0.05) higher overall protein levels than those harboring TaPrx1, indicating that the TaeIF5A1 expression increases protein level in yeast cells.
Overexpression of TaeIF5A1 improves salt tolerance in transgenic plants
To investigate whether overexpression of TaeIF5A1 in plants enhances stress tolerance, transgenic poplar plants expressing the TaeIF5A1 were generated. DNA and RNA gel blot analyses were conducted to confirm the integration and expression of exogenous TaeIF5A1 in transgenic plants (Additional file 2B, C). Salt tolerance test on tube seedlings showed that there was no difference in height growth under normal growth conditions. However, under salt stress conditions, many transgenic lines exhibited significantly increased height growth relative to WT plants (Figure 8A, B). In addition, salt tolerance test on plantlets in soil indicated that all the transgenic lines except line 7 displayed significantly improved height and basal diameter growth than control did (Figure 8C). All these results suggested that salt tolerance of the transgenic lines was improved due to the overexpression of TaeIF5A1.
Additional abiotic stress tolerance assays
Transgenic and WT plantlets were treated with CuSO4, CdCl2 and ZnCl2 or sorbitol for 16 d, and then their growth was compared. We found no difference in growth height between WT and transgenic plants under normal growing condition. However, relative to the WT, the transgenic plants exhibited greatly increased height growth under the various stress conditions (Figure 8D, E), indicating that plants overexpressing TaeIF5A1 possess increased tolerance to these forms of abiotic stresses.
Measurement of soluble protein content
Prior to salt stress, soluble protein levels in transgenic plants did not significantly differ from those of WT plants. However, after 4 d and 7 d of salt stress, all transgenic lines contained significantly (P < 0.05) higher levels of soluble protein than WT plants (Figure 9A), indicating that overexpression of TaeIF5A1 greatly increases soluble protein levels in transgenic plants under salt stress conditions compared to WT plants.
POD activity assay
Transgenic and WT plants had similar POD activity prior to salt stress. Under salt stress conditions, POD activity in WT plants was transiently elevated after 1 d of stress, and subsequently recovered. However, in all transgenic plants POD activity was markedly improved and was significantly (P < 0.05) higher than that in the WT during the entire 4–7 d period of exposure to stress conditions (Figure 9B).
SOD activity comparison
SOD activity in the transgenic lines was either higher or lower than that of WT plants prior to salt stress (Figure 9C). Under salt stress conditions, SOD activity in WT plants did not change; however SOD activity was increased in transgenic lines, being significantly (P < 0.05) higher after 4 and 7 d of exposure to salt stress (Figure 9C), indicating that TaeIF5A1 overexpression specifically increases SOD activity under salt stress condition.
Electrolyte leakage assay
Electrolyte leakage was not significantly different (P > 0.05) between transgenic and WT plants prior to stress. Electrolyte leakage increased in both transgenic and WT plants under stress conditions, with maximal electrolyte leakage levels after 7 d of salt stress. However, the increase of electrolyte leakage in transgenic lines was significantly lower than in WT plants (Figure 9D). These results indicated that transgenic plants suffer less membrane damage under salt stress conditions compared to WT plants.
Relative chlorophyll content (RCC) comparison
The RCC of WT plants did not notably vary following exposure to salt stress for 1–7 d, but markedly decreased after 14 d of exposure to stress. However, the RCC in transgenic plants increased over 4–7 d, and reached significantly (P < 0.05) higher levels than that of WT control plants under stress for 7–14 d (Figure 9E), indicating that TaeIF5A1 overexpression may enhance chlorophyll levels and prevent chlorophyll loss under salt stress condition.
TaeIF5A1 is expressed in all tissues of plants, and tolerant to different abiotic stresses
In the present study, we found that the TaeIF5A1 gene was significantly differentially regulated by NaCl, NaHCO3, PEG and CdCl2 treatments (Figure 2A–D), suggesting roles in the abiotic stress response. In addition, the expression of TaeIF5A1 and its upstream regulators, TaRAV and TaWRKY, were strongly inhibited by ABA (Figure 6A), suggesting that they are involved in ABA-dependent signaling pathway. Moreover, both yeast transformants and transgenic plants expressing TaeIF5A1 displayed increased tolerance to NaCl, KCl, ZnCl2, CuSO4, CdCl2 and sorbitol stresses. Furthermore, TaeIF5A1 gene is expressed in all the tissues including leaves, roots and stem at different growth stages, and also in reproductive organs (Figure 3B); therefore they may play role of stress tolerance in all of these tissues of plants.
The W-box motif “CTGACT” can be specifically recognized by TaRAV and TaWRKY
RAV transcription factors contain an AP2/ERF domain in their N-terminal regions and a B3 domain in their C-termini. Some RAV genes can interact with the sequences “CAACA”, “CACCTG” and the GCC-box “AGCCGCC” , which are involved in plant defense pathways  and diverse bioprocesses such as flowering, germination and the early events of leaf senescence [24, 25]. In the present study, a RVA gene, TaRVA, was found to bind to the W-box motif “CTGACT” (Figure 5v), and the binding is lost following “G” to “A” or “A” to “G” mutation of core “TGAC” motif (Figure 5B), suggesting a specific interaction.
WRKY genes play a variety of roles in plant developmental and physiological processes. Previous studies showed that most WRKY proteins can bind to the cognate cis-acting element “C/TTGACT/C” in the promoter or the 5’ untranslated regions of target genes . Our results showed that a WRKY homolog (TaWRKY) can specifically bind to the W-box motif “CTGACT” and that the core “TGAC” motif is sufficient for binding (Figure 5B).
The expression of TaeIF5A1 is likely regulated by TaWRKY and TaRAV both of which can bind to the W-box
A W-box motif is present in the TaeIF5A1 promoter, indicating that it may be regulated by W-box-binding transcription factors. Both yeast one-hybrid analysis and co-expression of reporter and effector genes demonstrated that two proteins, TaWRKY and TaRAV, which can specially bind to TaeIF5A1 promoter fragments containing the W-box, but failed in binding to the same fragments containing the mutated core sequence “TTTT” (Figure 5C, D). These results clearly suggested that both TaWRKY and TaRAV can activate the expression of TaeIF5A1 by binding to the W-box motif present in the promoter of TaeIF5A1. Moreover, the expression of TaeIF5A1, TaWRKY and TaRAV share very similar expression patterns, are all inhibited following ABA treatment and induced by osmotic stress (Figure 6A, B), suggesting that TaeIF5A1, TaWRKY and TaRAV may be components of a single regulatory pathway. Therefore, these combined results strongly suggest that TaWRKY and TaRAV are the upstream regulators of TaeIF5A1 that can regulate the expression of TaeIF5A1 through binding to the W-box motif in the TaeIF5A1 promoter. In Arabidopsis, the homologs of TaeIF5A1, AT1G13950, also has three W-box motifs in its promoter (from −10 to −670), suggesting that it may also be regulated by RAV and WRKY. Interestingly, real time RT-PCR results showed that the AT1G13950, AT1G68840 and AT1G13960 all shared very similar expression profiles in response to ABA and osmotic stress (Figure 6C, D), implying that these genes may also be components of a single regulatory pathway. These results indicated that the RAV and WRKY activate the expression of eIF5A may be a conserved mechanism of transcriptional regulation, which is also maintained in the model plant Arabidopsis.
TaeIF5A1 facilitates protein synthesis to improve stress tolerance
In the present study, we introduced TaeIF5A1 into yeast S. cerevisiae and poplar to investigate the role of TaeIF5A1 in protein synthesis. We found that overall protein levels in S. cerevisiae and poplar expressing exogenous TaeIF5A1 significantly improved compared with controls (Figure 7C and Figure 9A). These results suggest that TaeIF5A1 facilitates protein synthesis. In plants, protein synthesis is highly sensitive to salt stress and overexpression of eIF1A can improve protein translation under stress conditions [1, 26]. Increased salt tolerance is observed in plants transformed with eIF1A, indicating that protein synthesis positively correlates with stress tolerance . In addition, protein accumulation provides a stored form of nitrogen that can be utilized to adjust osmotic potential , suggesting that a vital component of stress tolerance is the maintenance and enhancement of protein synthesis under stress conditions. Therefore, soluble protein levels may be closely associated with plant abiotic stress tolerance. These facts suggested that overexpression of TaeIF5A1 improves both protein levels and stress tolerance supports this hypothesis.
TaeIF5A1 regulates some physiological pathways to improve stress tolerance
Abiotic stresses, including salt, drought and extreme temperatures, can induce the rapid generation and accumulation of reactive oxygen species (ROS) that cause secondary oxidative stress to plants. Therefore, improving the ROS scavenging capacity is vital for plants to resist abiotic stress conditions. Both POD and SOD are important ROS scavenging enzymes integral to plant stress tolerance. In the present study, two results must be considered together: transgenic TaeIF5A1 lines had significantly higher POD and SOD activity than WT plants (Figure 9B, C); and transgenic TaeIF5A1 lines exhibited elevated protein synthesis (Figure 9A) under stress conditions. Consequently, we hypothesize that TaeIF5A1 increases SOD and POD activity by elevating POD and SOD enzyme synthesis and/or the synthesis of related proteins. In addition, elevated POD and SOD activity may enhance the ROS scavenging capacity of plants under salt stress. Moreover, abiotic stresses in plants also typically result in cell membrane damage, leading to electrolyte leakage. Therefore, electrolyte leakage is a common indicator of membrane damage and leakage is closely related to a loss in water potential. Our results indicate that the level of electrolyte leakage in WT plants is significantly higher than in transgenic plants (Figure 9D). These results suggested that TaeIF5A1 may also serve a role in membrane protection under stress conditions.
Chlorophyll is the green plant pigment that absorbs light energy vital for photosynthesis. Salinity causes a reduction in chlorophyll levels and inhibits the net photosynthetic rate. Thus, chlorophyll content is a good indicator of the photosynthetic function of plants under adverse environmental conditions. Previous studies have shown that RCC in trees is reduced by aggravated salt stress due to the degradation of enzymatic chlorophyll . We found that the RCC in WT and TaeIF5A1-transformed plants was similar under normal conditions. However, TaeIF5A1-transformed plants displayed an increased RCC following stress, and RCC was significantly higher in transgenic relative to WT plants following 4–14 days of stress (Figure 9E). These results suggest that eIF5A also has a role in preventing chlorophyll loss under salt stress. The increased RCC indicates that TaeIF5A1-transformed plants should increase or maintain a stable photosynthetic rate under salt stress compared to WT plants. A previous study showed that RceIF5A confers tolerance to heat, oxidative and osmotic stress, and overexpression of RceIF5A can enhance SOD activity and proline level, and decrease electrolyte leakage . In the present study, we further showed that TaeIF5A1 is also tolerant to salt and heavy metal stresses, and overexpression of TaeIF5A1 can not only enhance SOD activity and decrease electrolyte leakage, but also facilitate protein synthesis, increase POD activities and maintain higher chlorophyll content under salt stress. These results suggested that eIF5A is involved in eliciting a stress response mechanism that may play a common role in plant tolerance to salt, heat, oxidative, osmotic and heavy metal stresses.
In summary, TaeIF5A1 is a stress responsive gene that forms part of the ABA signal transduction pathway. The expression of TaeIF5A1 is likely regulated by the transcription factor TaWRKY and TaRAV both of which can bind to W-box “CTGACT”. Furthermore, TaeIF5A1 can facilitate protein synthesis and confer abiotic stress tolerance. We propose that TaeIF5A1 increases plant salt tolerance via several physiological pathways, including enhancement of protein synthesis, elevation of SOD and POD activity, increase or maintenance of photosynthetic rates and the protection of cell membranes. Therefore, eIF5A serves essential and multiple roles in the reduction and elimination of stress imposed on plants by various abiotic factors.
Plant materials, growth conditions, and treatments
T. androssowii seedlings were grown in pots containing a mixture of turf peat and sand (2:1 v/v). Thoroughly watered 2-month-old seedlings were each exposed to the following treatments: 0.4 M NaCl, 20% (w/v) PEG6000, 0.3 M NaHCO3, 150 μM CdCl2, and 150 μM ABA for 0, 6, 12, 24, 48, and 72 h, respectively. Following these treatments, leaves, stems and roots of seedlings from each sample (sample size of 10 seedlings) were harvested at the indicated times after initiation of each treatment and pooled for real-time RT-PCR analyses.
Seedlings of Arabidopsis were grown into pots filled with perlite/soil mixture in a growth chamber under the controlled conditions (16 h light: 8 h dark; 70-75 % relative humidity; 22°C). Three week-old seedlings were each exposed to the following treatments: 20% (w/v) PEG6000, or 100 μM ABA for 0, 3, 6 and 12 h, respectively. After these treatments, the leaves and roots of seedlings were respectively harvested and pooled (sample size of 10 seedlings) for real-time RT-PCR analyses.
Cloning and expression analysis of TaeIF5A1
A TaeIF5A1 (AY587771) gene was cloned from T. androssowii cDNA library . The sequence alignments of the eIF5A proteins from different species, including plants, yeast, mammalian and other eukaryotes was conducted using CLUSTALX1.81, and a phylogenetic tree was constructed using the Neighbor-Joining method provided by the computer program MEGA5. The promoter of TaeIF5A1 was PCR-amplified from genomic DNA of T. androssowii using the Genome Walking Kit (TaKaRa, China). To analyze the activity of promoter of TaeIF5A1, the 35S promoter in pCAMBIA1301 was replaced with the TaeIF5A1 promoter (1,486 bp in length) to drive the β-glucuronidase (GUS) gene (Figure 3A). The TaeIF5A1 promoter::GUS construct was transferred into Arabidopsis plants by floral dip method. The T3 seedlings were employed for spatial expression analysis of TaeIF5A1 using GUS staining.
Real-time RT-PCR was performed in Opticon 2 System (Bio-Rad, Hercules, CA) with α-tubulin β-tubulin and β-actin genes as internal references. Primers used for RT-PCR are listed in Additional file 3: Table S1. The amplification was performed using the following cycling parameters: 94°C for 30 s followed by 45 cycles at 94°C for 12 s, 60°C for 30 s, 72°C for 40 s and 82°C for 1 s for plate reading. A melting curve was generated for each sample at the end of each run to assess the purity of the amplified products. Each reaction was conducted in triplicate to ensure reproducibility of results. Expression levels were calculated from the cycle threshold according to the delta delta Ct method .
Subcellular localization of the TaeIF5A1 protein
The TaeIF5A1 coding region without the termination codon was ligated in frame to N-terminal of the green fluorescent protein (GFP) to generate the TaeIF5A1::GFP fusion gene. A CaMV 35S promoter was employed to drive TaeIF5A1::GFP, and the GFP gene under the control of the CaMV 35S promoter (35S::GFP) was used as a control. The constructs were introduced into the onion epidermis cells by particle bombardment (Bio-Rad). The transformed cells were analyzed using confocal laser scanning microscopy LSM410 (Zeiss, Jena, Germany).
Identification of the upstream regulator of TaeIF5A1
One W-box motif (“CTGACT”)  was found to exist in the promoter of TaeIF5A1 (Additional file 1). To study which gene can recognize this W-box and regulate the expression of TaeIF5A1, the three tandem copies of promoter sequence fragment (“AGGCTGACT”) containing W-box motif sequence were cloned into a pHIS2 vector (construct R3, Figure 5A), and were screened with Tamarix cDNA library for a one-hybrid assay (Clontech, Palo Alto, CA, USA). To investigate the interactions between the W-box and positive clones, we mutated the W-box core motif “TGAC” [31, 32] with “TGGC”, “TAAC” or “TTTT” (constructs R4, R5, R6, Figure 5A) , and the interactions between the mutant W-box sequences and the positive clones were performed using yeast one hybrid. To further confirm the upstream regulator of TaeIF5A1, a 461 bp fragment of TaeIF5A1 promoter (from −456 to −916) containing the W-box motif (construct R1, Figure 5A ), and a 165 bp fragment of TaeIF5A1 promoter (from −591 to −755) containing the W-box motif and a 165 bp fragment of TaeIF5A1 promoter (from −591 to −755) containing the mutated W-box core motif “TTTT” (construct R2, mR2, Figure 5A), were cloned into pHIS2, respectively. The interactions between putative upstream regulators and the promoter fragments containing W-box or mutated W-box were performed using a yeast one-hybrid assay. In the above experiments, the p53HIS2 plasmid (pHIS2 contains three copies of p53 DNA element) was used as a negative control vector. All primers are shown in Additional file 3: Table S2.
For further verification of these interactions, the three tandem copies of the W-box and the 165 bp promoter fragments containing W-box motif or mutated core motif “TTTT” were fused with 35S CaMV −46 minimal promoter and respectively cloned into pCAMBIA1301 to replaced with its 35S promoter for driving the GUS gene (constructs containing three tandem copies of the W-box named as pCAM-W-box, containing promoter fragment with W-box and mutated W-box named as pCAM-W165 and pCAM-mW165). The effector vectors were constructed by cloning the full ORF of TaRVA or TaWRKY into pROKII under the control of 35S promoter (named as pROKII-TaRVA and pROKII-TaWRKY) (Figure 5 Da). All primers are shown in Additional file 3: Table S3. Both the reporter and effector vectors were co-transformed into tobacco leaves using the particle bombardment. GUS staining assay was performed as described by Jefferson , and GUS activity was determined according to the method of Jefferson .
To investigate the expression patterns of the upstream regulators of TaeIF5A1, real-time PCR was performed to determine the expression of TaeIF5A1 and the upstream regulators in Tamarix under ABA and osmotic stress conditions. For investigation of the expression of the homologs of TaeIF5A1, TaRAV and TaWRKY in Arabidopsis in response to ABA and osmotic stimulus, BLASTX research on Tair (http://www.arabidopsis.org/Blast/) was performed, we identified the homologs of TaeIF5A1, TaRAV and TaWRKY in Arabidopsis are AT1G13950, AT1G68840 and AT1G13960, respectively. An actin gene (AT3G18780) was used as internal reference to normalize the amount of total RNA present in each reaction. The primers used are listed in Additional file 3: Table S1, and the real-time PCR conditions were the same as above.
Expression of TaeIF5A1 in S. cerevisiae and stress-tolerance assays
The full ORF of TaeIF5A1 was cloned into pYES2 vector (Invitrogen), and was introduced into S. cerevisiae strain, INVSc1 (MATa, his3-1, leu2, trp1-289, ura3-52. His-, Leu-, Trp-, and Ura-). To determine the expression peak of TaeIF5A1 in yeast, yeast transformants harboring the TaeIF5A1 were cultivated in induction medium (SC-U medium containing 2% galactose) at 30°C for 0, 12, 24, 36, 48 and 60 h, and harvested for RNA gel blot analysis.
For stress tolerance assays, clones harboring TaeIF5A1 and empty pYES2 (control) were cultured into SC-U medium containing 2% glucose at 30°C with overnight shaking, adjusted to OD600 of 0.4 in induction medium, and incubated at 30°C for 36 h (RNA gel blot result showed that peak level of exogenous gene induced at this time). After incubation, cell densities were adjusted to equal and incubated in different concentrations of NaCl, KCl, LiCl or sorbitol, then they were incubated at 30°C with overnight shaking. The growth rates were evaluated by measuring the OD600 for liquid medium in each sample.
To analyze protein content, yeast transformants harboring Peroxiredoxin gene (TaPrx1, GenBank number: JQ082512) from Tamarix were used as control (it can remove the protein synthesis differences between the yeast transformants harboring TaeIF5A1 and empty pYES2; since transformants harboring empty pYES2 failed in producing an exogenous gene-eIF5A compared with that harboring TaeIF5A1). The yeast transformants harboring TaeIF5A1 TaPrx1 and empty pYES2 were cultured in induction medium at 30°C for 0, 12, 24, 36 and 48 h, adjusted to equal quantity, and harvested for soluble protein content analysis. The experiment was repeated at least three times. The protein extraction followed the procedure described by Kushnirov  and protein content analyses were performed following the Bradford method .
Construction of plant expression vector and poplar transformation
The TaeIF5A1 was cloned into pROKII (Additional file 2A), in which TaeIF5A1 under the control of CaMV 35S promoter, and transferred into poplar plants (Populus davidiana Dode × P. bollena Lauche) using the Agrobacterium-mediated transformation. Kanamycin-resistant lines were detected by DNA gel blot and RNA gel blot. DNA probe for RNA and DNA gel blot were prepared by PCR amplification of the coding region of the TaeIF5A1 using digoxigenin (DIG) - PCR labeling mix (Roche). Total DNA (30 μg) from samples was digested with BamH I and Sac I and separated by electrophoresis on a 0.8% agarose gel. The DNA was denatured with NaOH and then transferred to Hybond N+ membranes (Amersham). Hybridization and detection was performed following the manual instruction (DIG High Prime DNA Labeling and Detection Starter Kit II; Roche). To detect the expression of exogenous TaeIF5A1, total RNA (20 μg) was fractionated on formaldehyde agarose gels, blotted on Hybond N+ membranes and fixed by UV cross-linking (254 nm, 8 min). Hybridization and detection were conducted following the manufacturer’s instructions (Dig Northern starter kit, Roche).
Physiological analysis of transgenic and nontransgenic poplar
The wild-type and the transgenic plants exhibiting similar height (about 1 cm in length) were grown on 1/2MS medium supplemented with 0.6% NaCl (16 h light: 8 h dark, 25°C in tube). The phenotypes of plantlets were photographed, and the heights of plantlets were measured after 20 d of growth.
For growth comparison of plants in soil, plantlets from WT and transgenic plants with similar height (about 70 cm in height) were employed. The height and basal diameter of each sample (sample size of 10) were measured before stress as baseline values. The plantlets were treated with 0.8% NaCl solution for 30 d then watered normally. Following 90 days of growth, the height and basal diameter (final values) were measured, and the relative growth rates of growth in height or basal diameter were calculated.
For physiological analysis, plantlets (60–100 cm in height) from WT and transgenic plants grown in soil were watered with 0.8% (w/v) NaCl solution for 0, 1, 4 and 7 d, and leaves were harvested for analyses. For measurement of concentration of soluble protein, a standard curve for protein level with known concentrations of bovine serum albumin (0–100 mg, at 20 mg intervals) was generated. Phosphate buffer (1.5 mL, 0.01 M, pH 7.0) was added with sample leaf powder (0.1 g), extracted for 3 min, and centrifuged. One mL of supernatant was added with 2 mL of coomassie brilliant blue G250 regent, and the light absorbance was determined at 595 nm. Water was used instead of supernatant as control, and the protein concentrations were calculated using the standard curve. For POD activity measurement, each sample powder (0.05-0.1 g) was incubated with 1.5 ml of 0.01 M phosphate buffer (pH 7.2) at 4°C for 30 min. After centrifugation, 20 μL of supernatant was diluted to 500 μL with water, then added with 0.5 mL of 0.8% H2O2 , 0.5 mL of 0.1 M phosphate buffer, 0.5 mL of 0.1 M Guaiacol buffer, and incubated at 30°C for 8 min. Light absorbance (ΔA470) of the reaction solution was measured at 470 nm. Water was used instead of H2O2 as a control. POD activity (A pod ) was calculated as follows: A pod = (ΔA470V) / WTv × 100. Where V: total enzyme volume, v: the volume of enzyme used in reaction, W: the material weight, T: reaction time (min). For SOD activity assay, phosphate buffer (1.5 mL) was added with the leaf powder and incubated at 4°C for 30 min. After centrifugation, 30 mL of the supernatant was diluted to 500 mL with water and added with 1.5 mL of reaction buffer (0.013 M Met, 6.3 × 10-6 M NBT, 6.5 × 10-6 M riboflavin, 1 × 10-4 M EDTA, 0.05 M phosphate buffer, pH 7.8), and incubated at 30°C for 10 min under 6000 LX. The solution was measured at 560 nm. SOD activity was calculated as ASOD[Ug-1 min-1 (FW)] = (ΔA560 × N) / (50% WT); where ΔA560 is the decrease absorbance at 560 nm (%), N: the dilution folds, W: the weight and T: the reaction time (min). Electrolyte leakage was determined according to Wang et al.. Soluble protein contents were measured following Bradford method . A chlorophyll analyzer (Konica Minolta, Japan) was used to determinate relative chlorophyll content (RCC) in plants stressed for 1–14 d. Each sample contained at least ten plantlets and each experiment was performed in triplicate to ensure the accuracy of analyses.
For other abiotic stress tolerance tests, the plantlets with similar size were grown on 1/2MS medium supplied with 300 μM of CuSO4, CdCl2, 1 mM of ZnCl2 and 200 mM of sorbitol. Plantlets growing in normal 1/2MS medium were used as the control. After 16 d of stress, the height between WT and transgenic lines plants were compared.
Data analyses were carried out using SPSS 16.0 (SPSSInc, Chicago, III, USA) software. For all the analyses, the significance level was set at P < 0.05. Sample variability is given as the standard deviation (S.D.) of the mean.
Li AL, Li HY, Jin BF, Ye QN, Zhou T, Yu XD, Pan X, Man JH, He K, Yu M: A novel eIF5A complex functions as a regulator of p53 and p53-dependent apoptosis. J Biol Chem. 2004, 279 (47): 49251-49258. 10.1074/jbc.M407165200.
Costa-Neto CM, Parreiras ESLT, Ruller R, Oliveira EB, Miranda A, Oliveira L, Ward RJ: Molecular modeling of the human eukaryotic translation initiation factor 5A (eIF5A) based on spectroscopic and computational analyses. Biochem Biophys Res Commun. 2006, 347 (3): 634-640. 10.1016/j.bbrc.2006.06.119.
Hopkins MT, Lampi Y, Wang TW, Liu Z, Thompson JE: Eukaryotic translation initiation factor 5A is involved in pathogen-induced cell death and development of disease symptoms in Arabidopsis. Plant Physiol. 2008, 148 (1): 479-489. 10.1104/pp.108.118869.
Feng H, Chen Q, Feng J, Zhang J, Yang X, Zuo J: Functional characterization of the Arabidopsis eukaryotic translation initiation factor 5A-2 that plays a crucial role in plant growth and development by regulating cell division, cell growth, and cell death. Plant Physiol. 2007, 144 (3): 1531-1545. 10.1104/pp.107.098079.
Liu Z, Duguay J, Ma F, Wang TW, Tshin R, Hopkins MT, McNamara L, Thompson JE: Modulation of eIF5A1 expression alters xylem abundance in Arabidopsis thaliana. J Exp Bot. 2008, 59 (4): 939-950. 10.1093/jxb/ern017.
Dias CA, Cano VS, Rangel SM, Apponi LH, Frigieri MC, Muniz JR, Garcia W, Park MH, Garratt RC, Zanelli CF, et al: Structural modeling and mutational analysis of yeast eukaryotic translation initiation factor 5A reveal new critical residues and reinforce its involvement in protein synthesis. FEBS J. 2008, 275 (8): 1874-1888. 10.1111/j.1742-4658.2008.06345.x.
Gregio APB, Cano VPS, Avaca JS, Valentini SR, Zanelli CF: eIF5A has a function in the elongation step of translation in yeast. Biochem Biophys Res Commun. 2009, 380 (4): 785-790. 10.1016/j.bbrc.2009.01.148.
Saini P, Eyler DE, Green R, Dever TE: Hypusine-containing protein eIF5A promotes translation elongation. Nature. 2009, 459 (7243): 118-121. 10.1038/nature08034.
Henderson A, Hershey JW: Eukaryotic translation initiation factor (eIF) 5A stimulates protein synthesis in Saccharomyces cerevisiae. Proc Natl Acad Sci. 2011, 108 (16): 6415-10.1073/pnas.1008150108.
Chatterjee I, Gross SR, Kinzy TG, Chen KY: Rapid depletion of mutant eukaryotic initiation factor 5A at restrictive temperature reveals connections to actin cytoskeleton and cell cycle progression. Molecular genetics and genomics. 2006, 275 (3): 264-276. 10.1007/s00438-005-0086-4.
Park M, Nishimura K, Zanelli C, Valentini S: Functional significance of eIF5A and its hypusine modification in eukaryotes. Amino acids. 2010, 38 (2): 491-500. 10.1007/s00726-009-0408-7.
Clement PMJ, Johansson HE, Wolff EC, Park MH: Differential expression of eIF5A‒1 and eIF5A‒2 in human cancer cells. FEBS J. 2006, 273 (6): 1102-1114. 10.1111/j.1742-4658.2006.05135.x.
Teng YB, Ma XX, He YX, Jiang YL, Du J, Xiang C, Chen Y, Zhou CZ: Crystal structure of Arabidopsis translation initiation factor eIF‒5A2. Proteins: Structure, Function, and Bioinformatics. 2009, 77 (3): 736-740. 10.1002/prot.22530.
Wang TW, Lu L, Zhang CG, Taylor C, Thompson JE: Pleiotropic effects of suppressing deoxyhypusine synthase expression in Arabidopsis thaliana. Plant Mol Biol. 2003, 52 (6): 1223-1235.
Ma Y, Miura E, Ham BK, Cheng HW, Lee YJ, Lucas WJ: Pumpkin eIF5A isoforms interact with components of the translational machinery in the cucurbit sieve tube system. The Plant Journal. 2010, 64 (3): 536-550. 10.1111/j.1365-313X.2010.04347.x.
Xu J, Zhang B, Jiang C, Ming F: RceIF5A, encoding an eukaryotic translation initiation factor 5A in Rosa chinensis, can enhance thermotolerance, oxidative and osmotic stress resistance of Arabidopsis thaliana. Plant Mol Biol. 2011, 75: 167-178. 10.1007/s11103-010-9716-2.
Ma F, Liu Z, Wang TWEI, Hopkins MT, Peterson CA, Thompson JE: Arabidopsis eIF5A3 influences growth and the response to osmotic and nutrient stress. Plant Cell Environ. 2010, 33 (10): 1682-1696. 10.1111/j.1365-3040.2010.02173.x.
Valentini SR, Casolari JM, Oliveira CC, Silver PA, McBride AE: Genetic interactions of yeast eukaryotic translation initiation factor 5A (eIF5A) reveal connections to poly (A)-binding protein and protein kinase C signaling. Genetics. 2002, 160 (2): 393-
Chou WC, Huang YW, Tsay WS, Chiang TY, Huang DD, Huang HJ: Expression of genes encoding the rice translation initiation factor, eIF5A, is involved in developmental and environmental responses. Physiol Plant. 2004, 121 (1): 50-57. 10.1111/j.0031-9317.2004.00292.x.
Higo K, Ugawa Y, Iwamoto M, Korenaga T: Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 1999, 27 (1): 297-300. 10.1093/nar/27.1.297.
Xie Z, Zhang ZL, Zou X, Huang J, Ruas P, Thompson D, Shen QJ: Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiol. 2005, 137 (1): 176-189. 10.1104/pp.104.054312.
Kagaya Y, Ohmiya K, Hattori T: RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res. 1999, 27 (2): 470-478. 10.1093/nar/27.2.470.
Li CW, Su RC, Cheng CP, You SJ, Hsieh TH, Chao TC, Chan MT: Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway. Plant Physiol. 2011, 156 (1): 213-10.1104/pp.111.174268.
Gutierrez L, Van Wuytswinkel O, Castelain M, Bellini C: Combined networks regulating seed maturation. Trends Plant Sci. 2007, 12 (7): 294-300. 10.1016/j.tplants.2007.06.003.
Woo HR, Kim JH, Kim J, Lee U, Song IJ, Lee HY, Nam HG, Lim PO: The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis. J Exp Bot. 2010, 61 (14): 3947-3957. 10.1093/jxb/erq206.
Rausell A, Kanhonou R, Yenush L, Serrano R, Ros R: The translation initiation factor eIF1A is an important determinant in the tolerance to NaCl stress in yeast and plants. The Plant Journal. 2003, 34 (3): 257-267. 10.1046/j.1365-313X.2003.01719.x.
Parvaiz A, Satyawati S: Salt stress and phyto-biochemical responses of plants-a review. Plant Soil and Environment. 2008, 54 (3): 89-
Xu XW, Xu HL, Wang YL, Wang XJ, Qiu YZ, Xu B: The effect of salt stress on the chlorophyll level of the main sand-binding plants in the shelterbelt along the Tarim Desert Highway. Chin Sci Bull. 2008, 53: 109-111. 10.1007/s11434-008-6012-5.
Wang YC, Yang CP, Liu GF, Jiang J, Wu JH: Generation and analysis of expressed sequence tags from a cDNA library of Tamarix androssowii. Plant Science. 2006, 170 (1): 28-36. 10.1016/j.plantsci.2005.07.027.
Livak KJ, Schmittgen TD: Analysis of relative gene expression data using real-time quantitative PCR and the 2-[Delta][Delta] CT method. Methods. 2001, 25 (4): 402-408. 10.1006/meth.2001.1262.
Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE: Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors. EMBO J. 1999, 18 (17): 4689-4699. 10.1093/emboj/18.17.4689.
Kirsch C, Logemann E, Lippok B, Schmelzer E, Hahlbrock K: A highly specific pathogen‒responsive promoter element from the immediate‒early activated CMPG1 gene in Petroselinum crispum. The Plant Journal. 2001, 26 (2): 217-227. 10.1046/j.1365-313x.2001.01015.x.
Jefferson R: The GUS reporter gene system. Nature. 1989, 342 (6251): 837-10.1038/342837a0.
Jefferson RA, Kavanagh TA, Bevan MW: GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 1987, 6 (13): 3901-
Kushnirov VV: Rapid and reliable protein extraction from yeast. Yeast. 2000, 16 (9): 857-860. 10.1002/1097-0061(20000630)16:9<857::AID-YEA561>3.0.CO;2-B.
Bradford MM: A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem. 1976, 72 (1): 248-254. 10.1016/0003-2697(76)90527-3.
Wang Y, Jiang J, Zhao X, Liu G, Yang C, Zhan L: A novel LEA gene from Tamarix androssowii confers drought tolerance in transgenic tobacco. Plant Science. 2006, 171 (6): 655-662. 10.1016/j.plantsci.2006.06.011.
This work was supported by National Natural Science Foundation of China (No. 30972387), and Foundation for the Author of National Excellent Doctoral Dissertation of China (200973).
YW conceived and designed the experiments. LW, CX and CW performed the experiments. LW, CX and CW analyzed the data. YW contributed reagents/materials/analysis tools. LW and YW wrote the manuscript. All authors read and approved the final manuscript.
Liuqiang Wang, Chenxi Xu contributed equally to this work.
Electronic supplementary material
Additional file 1: The promoter sequence of TaeIF5A1 and the cis-elements within the promoter. The cis-elements are shown in different colors and the PCR primers used for the amplification of promoter fragments used in the yeast one-hybrid assay are indicated by a solid line. The primers Pro-af and Pro-ar were used amplifying 461 bp promoter fragment, and Pro-bf and Pro-br were used amplifying 165 bp promoter fragment. The putative transcription start site is underlined and the start codon (ATG) is labeled with a rectangle. (DOC 350 KB)
Additional file 2: DNA and RNA gel blot analyses of TaeIF5A1-transformed poplars. A. Diagram of the T-DNA region of the pROKII-TaeIF5A1 vector used for transformation. B. DNA gel blot analysis of transformed plants. DNA (30 μg) from each sample was digested with BamH I and Sac I, separated on agarose gels, denatured and transferred to Hybond N+ membranes. C. RNA gel blot analysis of WT and the transgenic poplar plants. Total RNA (20 μg) from each sample was fractionated on formaldehyde agarose gel and blotted on Hybond N+ membranes. P, pROKII-TaeIF5A1 vector using as positive control; WT, wild type poplar plants; 1–10, ten lines of transgenic poplar plants. (DOC 543 KB)
Authors’ original submitted files for images
Below are the links to the authors’ original submitted files for images.