From: Identification of novel maize miRNAs by measuring the precision of precursor processing
Family | miRNA | length (nt) | Sequence | Abundance (Reads per Million) | |||
---|---|---|---|---|---|---|---|
 |  |  |  | mixed | mixed | Embryo | endosperm |
 |  |  |  | tissue I | tissue II |  |  |
family1 | miRNA1 | 21 | CAGAAAAUCGGAGGAGAUUGA | 0 | 0 | 0 | 1.36 |
family1 | miRNA2 | 20 | AGGAUACCGGAGGAGAUUGA | 0 | 0 | 0.41 | 0 |
family2 | miRNA3 | 21 | UUAUAUAAGUUGGAUUAUGGU | 0 | 0.08 | 0 | 0.94 |
family3 | miRNA4 | 21 | UGGAAUCAAGUGUGACAUGUU | 0 | 0 | 0 | 1.25 |
family4 | miRNA5 | 21 | AUAUGGAUUGGAGGGGAUUGA | 0 | 0 | 0.07 | 1.78 |
family5 | miRNA6 | 21 | ACCGGAGGGGAUUGGAGGGGC | 3.96 | 0.5 | 0 | 0.42 |
family5 | miRNA7 | 21 | UUCUGGAGGGGAUUUGAGUUU | 0 | 0 | 0 | 0.63 |
family6 | miRNA8 | 20 | GGGAUUGAGGGGGCUAUAAU | 0 | 0 | 0.34 | 0.52 |
family6 | miRNA9 | 21 | GGGGAUUGGAGUGGCUAAAAU | 0 | 0.08 | 1.35 | 0.84 |
family7 | miRNA10 | 21 | UUUGAAUGCACUAGAGCUAAU | 0.29 | 0 | 0.54 | 5.85 |
family7 | miRNA11 | 21 | UUUGAAUGCACUAGAACUAAU | 2.34 | 0.42 | 0.74 | 31.67 |
family8 | miRNA12 | 21 | UCCGAAUGGUGUAGAAGGAAU | 0.59 | 1.17 | 0.14 | 6.06 |
family9 | miRNA13 | 21 | CUUGUGUCUUGGUUGUACGGU | 0.73 | 0 | 0 | 0.31 |
family10 | miRNA14 | 21 | AGGAAUUCACUUAAUUCCCGU | 0.73 | 0.08 | 0 | 0 |
family11 | miRNA15 | 21 | UGAAUUGACGAUUUUGCCCCU | 0 | 0.75 | 0.07 | 0.42 |
family12 | miRNA16 | 20 | UAUCUCUACAACUAUUAAGA | 0 | 0.08 | 0.81 | 0.1 |
family13 | miRNA17 | 20 | AUAUGGACGUGCAAAACACU | 0 | 0.58 | 1.22 | 0 |
family14 | miRNA18 | 21 | UUUGGGGUGGAUACGUGGUCA | 0 | 0.08 | 0 | 0.63 |
family15 | miRNA19 | 21 | AUGCAGAACAAUUUACAGACG | 2.05 | 7.26 | 0.68 | 20.07 |
family16 | miRNA20 | 21 | AUGGUGCAUUGACUUGGUCAA | 0.15 | 0.17 | 0 | 0.84 |
family17 | miRNA21 | 20 | CGACGAUCGAGAACGGCGAG | 0 | 0 | 0.41 | 0 |
family18 | miRNA22 | 20 | GCCAUAGAUCUUGGCGCCGA | 0 | 0.08 | 1.08 | 3.34 |
family19 | miRNA23 | 21 | UAUCUAGAAAAGCCGAAACGA | 0.44 | 0.08 | 0.07 | 1.05 |
family20 | miRNA24 | 21 | AAAGCUAGAACGACUUAUAAU | 0 | 0 | 0 | 1.25 |
family21 | miRNA25 | 22 | UCAGCGCCACCACGAUGACCUC | 0.15 | 0.08 | 0.61 | 0 |
family22 | miRNA26 | 22 | UGAAACAAGUAUCUCGAGAGCA | 25.06 | 0.17 | 0.68 | 100.24 |
family23 | miRNA27 | 22 | CAAGUGAGAGGUGGGAAUUCCC | 0 | 0 | 0 | 0.63 |
family24 | miRNA28 | 22 | AAAAAGCCAGAACGAUUUAUGA | 0.15 | 0.08 | 0.34 | 0.84 |
family25 | miRNA29 | 21 | UUUGGUAGUUUGAUUGGACGA | 0 | 0 | 0 | 0.73 |
family26 | miRNA30 | 20 | ACCAGACUAGAGCAGCAGAU | 0 | 15.86 | 0 | 0 |
family27 | miRNA31 | 20 | AUCCAUAGAGACAAAACACU | 0 | 0.42 | 0.47 | 0.21 |
family28 | miRNA32 | 21 | UUUAUAAUUCGUUUGACUUUU | 0.15 | 0.08 | 0 | 1.15 |
family29 | miRNA33 | 20 | AGAGACAAAAUACUGUAGAA | 0 | 0.42 | 0.95 | 0 |
family30 | miRNA34 | 21 | UGGACAGGGAAAUGAAGGGGA | 0.15 | 0 | 0 | 3.14 |
family31 | miRNA35 | 21 | UAGUACAUGGACCUAGAUGAC | 0.59 | 1.5 | 0.47 | 18.81 |
family32 | miRNA36 | 21 | AAAUUAUAGGGCAUUUUUAUA | 0 | 0 | 0.68 | 0.52 |
family33 | miRNA37 | 20 | GUUAUUUUCGGUAGCAUAAG | 0 | 0 | 0.41 | 0.1 |
family34 | miRNA38 | 21 | AAAAAGAAACGGAGGGAGUAC | 1.32 | 0.58 | 0.07 | 2.82 |
family35 | miRNA39 | 21 | AUACUAGGAGUGAAGGGAUCA | 0.29 | 0 | 0.07 | 3.55 |
family36 | miRNA40 | 21 | UCGGGAUUGAAGGGGAUUGGA | 0.73 | 0.08 | 0 | 2.82 |
family37 | miRNA41 | 21 | GGAGGGAAUUGGAGGGGCUAA | 3.81 | 0.25 | 0.27 | 7.73 |
family38 | miRNA42 | 21 | UUAAUAGACCAAGACAUGCAC | 0 | 5.26 | 0.07 | 0 |
family39 | miRNA43 | 20 | AUUAGUUGGCUAACUAUUAG | 0 | 0 | 0.34 | 0 |
family40 | miRNA44 | 21 | AUAUGGAUUGGAGGGGAUUGA | 0 | 0 | 0.07 | 1.78 |
family41 | miRNA45 | 20 | AAUUAGUCAUGGUAUGUUUA | 0 | 0 | 0.34 | 0 |
family42 | miRNA46 | 21 | UGAGAGCAAGGAUACUGGAGG | 0.73 | 0 | 0 | 0 |
family43 | miRNA47 | 21 | AAAUGAAACUGUAAAGGGCAU | 0.29 | 0.67 | 0.54 | 2.72 |
family44 | miRNA48 | 21 | CGAAGATCTTGGGAAGATGAC | 0 | 0 | 0 | 1.05 |
family45 | miRNA49 | 21 | UAGUUUGGGAACACUAAUUUC | 0 | 0 | 0 | 0.52 |
family46 | miRNA50 | 22 | CUUUGACGUGGGAGAGAGGCAC | 0 | 0 | 0.47 | 0.21 |
family47 | miRNA51 | 20 | AACUAAAAUGGAAUAAAAUG | 0 | 1.59 | 26.53 | 8.15 |
family48 | miRNA52 | 21 | UUUUUGUGGGGGACUAUAAAC | 0 | 0 | 0 | 0.52 |
family49 | miRNA53 | 20 | AACUAUUAGCUAGGAUGUUU | 0 | 0 | 0.14 | 0.73 |
family50 | miRNA54 | 21 | UUCACCAUAUAAGAUUGUUGA | 0 | 0 | 0 | 0.52 |
family51 | miRNA55 | 20 | GACGACCUCAGGAAGCUAUC | 0 | 0 | 0.41 | 0 |
family52 | miRNA56 | 21 | UUUGGGAGCAAGUGGAAUGGA | 0.15 | 0 | 0 | 0.52 |
family53 | miRNA57 | 20 | GAGACAAUUGCAUAUUUAGG | 0 | 0.42 | 0.41 | 0.42 |
family54 | miRNA58 | 20 | GAAGAGGAACACAAACAGAG | 0 | 0.5 | 0 | 0 |
family55 | miRNA59 | 21 | UAAGACGUUUUGACAUUUCUA | 0 | 0.17 | 0.07 | 1.05 |
family56 | miRNA60 | 21 | GUGGAUUGGAUGGUAUUGAGU | 0 | 0.17 | 0.2 | 0.52 |
family57 | miRNA61 | 21 | UUAGAUGGGAUACAUGAGAGG | 0 | 0.5 | 0 | 1.67 |
family58 | miRNA62 | 20 | AGGGACUAAAGUUUAGUUAG | 0 | 0.08 | 1.76 | 0.1 |
miR169 | miRNA63 | 21 | UAGCCAAGGAUGAGCUGCCUG | 0.15 | 0.42 | 0.07 | 0.1 |
miR171 | miRNA64 | 21 | UUGAGCCGCGUCAAUAUCUCC | 3.22 | 16.03 | 7.22 | 0.63 |
miR171 | miRNA65 | 21 | UUGAGCCGCGCCAAUAUCUCU | 0 | 0.5 | 0.27 | 0 |
miR156 | miRNA66 | 20 | UGAUAGAAGAGAGUGAGCAC | 0.88 | 2.25 | 8.91 | 3.14 |