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Table 4 Differentially regulated stress and defense response genes.

From: Tomato root transcriptome response to a nitrogen-enriched soil patch

Probe Set ID Putative Annotation Fold Change
(High N vs. water)
P-value Fold Change
(Low N vs. water)
P-value
Les.2287.3.A1_at TAS14 peptide dehydrin -24.08 0.053 -40.75 0.078
Les.5957.1.S1_at lactoylglutathione lyase -6.87 0.111 -17.15 0.078
Les.293.1.S1_at hydroxyacylglutathione hydrolase -4.66 0.513 -4.44 0.078
Les.23.1.S1_at glutathione S-transferase -4.54 0.569 -3.07 0.078
Les.124.1.S1_at glutathione transferase -4.38 0.044 -2.54 0.107
Les.5100.1.S1_at type I small heat shock protein -3.85 0.044 -2.20 0.107
Les.4789.1.S1_at pathogenesis-related protein -3.47 0.062 -2.12 0.115
Les.5341.1.S1_at pathogen responsive alpha-dioxygenase 2 -2.76 0.098 -1.85 0.131
Les.1645.1.A1_at pathogenesis-related chitin-binding protein -2.44 0.065 -1.74 0.133
Les.4004.1.S1_a_at pathogenesis related PR5-like protein -2.26 0.070 -1.59 0.143
Les.5098.1.S1_at early responsive to dehydration 7-like -2.20 0.064 -1.42 0.152
LesAffx.47187.1.S1_at responsive to dehydration 22-like -2.12 0.058 -1.34 0.165
Les.5103.1.S1_at pathogenesis-related protein 1 like -2.04 0.062 -1.33 0.168
Les.3151.1.S1_at universal stress protein -1.99 0.084 -1.33 0.168
Les.253.1.S1_at pathogenesis related protein 1-like -1.95 0.044 -1.29 0.229
Les.4910.1.S1_at stress enhanced protein 2-like -1.93 0.085 -1.26 0.232
Les.1498.1.S1_at dehydration responsive -1.87 0.096 -1.25 0.289
Les.208.1.S1_at glutathione S-transferase -1.72 0.062 -1.22 0.340
Les.2657.1.S1_at rare cold inducible protein-like -1.70 0.095 -1.20 0.377
Les.3194.1.S1_at universal stress protein -1.62 0.088 -1.16 0.386
Les.5128.1.S1_at responsive to dehydration 22-like -1.61 0.044 -1.14 0.454
Les.3276.3.S1_at monocysteinic thioredoxin -1.56 0.093 -1.11 0.509
Les.252.1.S1_at wound-responsive protein-related -1.50 0.077 -1.11 0.524
Les.54.1.S1_at sulfiredoxin 1.10 0.044 -1.10 0.537
Les.248.2.A1_at glutathione S-transferase 1.14 0.095 -1.08 0.796
Les.384.1.A1_at thaumatin-like pathogenesis-related PR-5 like protein 1.42 0.070 -1.07 0.850
Les.4307.1.S1_at early responsive to dehydration 3-like 1.47 0.053 -1.05 0.870
Les.1394.1.A1_at heat shock factor binding protein 1 1.82 0.063 1.22 0.185
Les.3593.1.S1_at heat shock protein 2.13 0.044 1.45 0.204
Les.2409.1.S1_at dnaJ related molecular chaperone 2.30 0.050 1.57 0.537
LesAffx.43379.1.S1_at dnaJ homologue 3 2.71 0.052 1.64 0.623
LesAffx.71535.1.S1_at heat shock protein 2.81 0.077 1.72 0.639
Les.641.1.S1_at dnaJ heat shock protein 3.01 0.067 1.95 0.746
LesAffx.66226.2.S1_at cold-regulated plasma membrane 1 protein 3.28 0.044 1.97 0.180
Les.5158.1.S1_at dehydration response element B1A 3.36 0.092 1.99 0.218
LesAffx.59336.1.S1_at response to desiccation 26-like transcription factor 3.59 0.082 2.25 0.231
  1. Probe Set ID; Affymetrix identifier for each microarray probeset. Putative Annotation; functional annotation based on tomato protein function or function of Arabidopsis orthologues identified with BLAST searches. Fold Change; linear fold changes (bold values significant at False Discovery Rate (FDR) adjusted P-value < 0.10).